ID   NKQK01000000; SV 01; linear; genomic DNA; SET; PLN; 1234 SQ.
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AC   NKQK01000000;
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PR   Project:PRJNA391506;
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DT   31-MAR-2018 (Rel. 136, Created)
DT   31-MAR-2018 (Rel. 136, Last updated, Version 0)
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DE   Actinidia chinensis var. chinensis cultivar Red5, whole genome shotgun
DE   sequencing project.
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KW   WGS.
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OS   Actinidia chinensis var. chinensis
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; Ericales; Actinidiaceae; Actinidia.
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RN   [1]
RP   1-1234
RA   Pilkington S., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y.,
RA   Gunaseelan K., Simpson R., Tahir J., Deroles S., Templeton K., Luo Z.,
RA   Davy M., Cheng C., Mcneilage M., Scaglione D., Liu Y., Zhang Q., Datson P.,
RA   De Silva N., Gardiner S., Bassett H., Chagne D., Mccallum J., Dzierzon H.,
RA   Deng C., Wang Y.-Y., Barron N., Manako K., Bowen J., Foster T., Erridge Z.,
RA   Tiffin H., Waite C., Davies K., Grierson E., Laing W., Kirk R., Chen X.,
RA   Wood M., Montefiori M., Brummell D., Schwinn K., Catanach A., Fullerton C.,
RA   Li D., Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D.,
RA   Zhang H., Mckenzie M., Knabel M., Harris A., Allan A., Chen A., Janssen B.,
RA   Plunkett B., Dwamena C., Voogd C., Leif D., Lafferty D., Souleyre E.,
RA   Varkonyi-Gasic E., Gambi F., Hanley J., Yao J.-L., Cheung J., David K.,
RA   Warren B., Marsh K., Snowden K., Lin-Wang K., Brian L.,
RA   Martinez-Sanchez M., Wang M., Ileperuma N., Macnee N., Campin R.,
RA   Mcatee P., Drummond R., Espley R., Ireland H., Wu R., Atkinson R.,
RA   Karunairetnam S., Bulley S., Chunkath S., Hanley Z., Storey R.,
RA   Thrimawithana A., Thomson S., David C., Testolin R.;
RT   "An improved, manually edited Actinidia chinensis var. chinensis
RT   (kiwifruit) genome highlights the challenges associated with draft genomes
RT   and gene prediction in plants";
RL   Unpublished.
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RN   [2]
RP   1-1234
RA   Pilkington S., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y.,
RA   Gunaseelan K., Simpson R., Tahir J., Deroles S., Templeton K., Luo Z.,
RA   Davy M., Cheng C., McNeilage M., Scaglione D., Liu Y., Zhang Q., Datson P.,
RA   De Silva N., Gardiner S., Bassett H., Chagne D., McCallum J., Dzierzon H.,
RA   Deng C., Wang Y.-Y., Barron N., Manako K., Bowen J., Foster T., Erridge Z.,
RA   Tiffin H., Waite C., Davies K., Grierson E., Laing W., Kirk R., Chen X.,
RA   Wood M., Montefiori M., Brummell D., Schwinn K., Catanach A., Fullerton C.,
RA   Li D., Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D.,
RA   Zhang H., McKenzie M., Knabel M., Harris A., Allan A., Chen A., Janssen B.,
RA   Plunkett B., Dwamena C., Voogd C., Leif D., Lafferty D., Souleyre E.,
RA   Varkonyi-Gasic E., Gambi F., Hanley J., Yao J.-L., Cheung J., David K.,
RA   Warren B., Marsh K., Snowden K., Lin-Wang K., Brian L.,
RA   Martinez-Sanchez M., Wang M., Ileperuma N., Macnee N., Campin R.,
RA   McAtee P., Drummond R., Espley R., Ireland H., Wu R., Atkinson R.,
RA   Karunairetnam S., Bulley S., Chunkath S., Hanley Z., Storey R.,
RA   Thrimawithana A., Thomson S., David C., Testolin R.;
RT   ;
RL   Submitted (20-JUL-2017) to the INSDC.
RL   New Cultivar Innovation, The New Zealand Institute for Plant and Food
RL   Research Ltd, 120 Mount Albert Road, Auckland 1025, New Zealand
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DR   BioSample; SAMN07269859.
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CC   The Actinidia chinensis var. chinensis whole genome shotgun (WGS)
CC   project has the project accession NKQK00000000.  This version of
CC   the project (01) has the accession number NKQK01000000, and
CC   consists of sequences NKQK01000001-NKQK01001234.
CC   
CC   ##Genome-Annotation-Data-START##
CC   Annotation Date     :: 22-JUN-2017
CC   Annotation Method   :: Apollo 2 and multiple lines of RNASeq
CC   evidence was used to manually curate
CC   AUGUSTUS3 ab initio predictions and
CC   alignments of gene models from a closely
CC   related genotype as well as to create new
CC   models based on RNASeq and BLASTp analysis
CC   where no predictions existed. Models were
CC   assigned a manual annotation quality score
CC   of 0, 1, or 3 based on presence of physical
CC   evidence and BLASTp comparison to NCBI
CC   RefSeq Plant 76
CC   Annotation Provider :: The New Zealand Institute for Plant and Food
CC   Research Ltd
CC   Annotation Version  :: Release 220617171606
CC   ##Genome-Annotation-Data-END##
CC   
CC   ##Genome-Assembly-Data-START##
CC   Assembly Date          :: 21-JUN-2017
CC   Assembly Method        :: Anytag v. 2.5.2; Newbler v. 2.9; SSPACE2
CC   v. 2.0
CC   Assembly Name          :: Red5_PS1_1.69.0
CC   Expected Final Version :: yes
CC   Genome Coverage        :: 90.0x
CC   Sequencing Technology  :: Illumina HiSeq
CC   ##Genome-Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1234
FT                   /organism="Actinidia chinensis var. chinensis"
FT                   /cultivar="Red5"
FT                   /variety="chinensis"
FT                   /mol_type="genomic DNA"
FT                   /country="New Zealand: Te Puke"
FT                   /sex="female"
FT                   /tissue_type="young leaf"
FT                   /db_xref="taxon:1590841"
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WGS  NKQK01000001-NKQK01001234
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CON  CM009654-CM009682
//