ID NKQK01000000; SV 01; linear; genomic DNA; SET; PLN; 1234 SQ. XX AC NKQK01000000; XX PR Project:PRJNA391506; XX DT 31-MAR-2018 (Rel. 136, Created) DT 31-MAR-2018 (Rel. 136, Last updated, Version 0) XX DE Actinidia chinensis var. chinensis cultivar Red5, whole genome shotgun DE sequencing project. XX KW WGS. XX OS Actinidia chinensis var. chinensis OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC asterids; Ericales; Actinidiaceae; Actinidia. XX RN [1] RP 1-1234 RA Pilkington S., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y., RA Gunaseelan K., Simpson R., Tahir J., Deroles S., Templeton K., Luo Z., RA Davy M., Cheng C., Mcneilage M., Scaglione D., Liu Y., Zhang Q., Datson P., RA De Silva N., Gardiner S., Bassett H., Chagne D., Mccallum J., Dzierzon H., RA Deng C., Wang Y.-Y., Barron N., Manako K., Bowen J., Foster T., Erridge Z., RA Tiffin H., Waite C., Davies K., Grierson E., Laing W., Kirk R., Chen X., RA Wood M., Montefiori M., Brummell D., Schwinn K., Catanach A., Fullerton C., RA Li D., Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D., RA Zhang H., Mckenzie M., Knabel M., Harris A., Allan A., Chen A., Janssen B., RA Plunkett B., Dwamena C., Voogd C., Leif D., Lafferty D., Souleyre E., RA Varkonyi-Gasic E., Gambi F., Hanley J., Yao J.-L., Cheung J., David K., RA Warren B., Marsh K., Snowden K., Lin-Wang K., Brian L., RA Martinez-Sanchez M., Wang M., Ileperuma N., Macnee N., Campin R., RA Mcatee P., Drummond R., Espley R., Ireland H., Wu R., Atkinson R., RA Karunairetnam S., Bulley S., Chunkath S., Hanley Z., Storey R., RA Thrimawithana A., Thomson S., David C., Testolin R.; RT "An improved, manually edited Actinidia chinensis var. chinensis RT (kiwifruit) genome highlights the challenges associated with draft genomes RT and gene prediction in plants"; RL Unpublished. XX RN [2] RP 1-1234 RA Pilkington S., Crowhurst R., Hilario E., Nardozza S., Fraser L., Peng Y., RA Gunaseelan K., Simpson R., Tahir J., Deroles S., Templeton K., Luo Z., RA Davy M., Cheng C., McNeilage M., Scaglione D., Liu Y., Zhang Q., Datson P., RA De Silva N., Gardiner S., Bassett H., Chagne D., McCallum J., Dzierzon H., RA Deng C., Wang Y.-Y., Barron N., Manako K., Bowen J., Foster T., Erridge Z., RA Tiffin H., Waite C., Davies K., Grierson E., Laing W., Kirk R., Chen X., RA Wood M., Montefiori M., Brummell D., Schwinn K., Catanach A., Fullerton C., RA Li D., Meiyalaghan S., Nieuwenhuizen N., Read N., Prakash R., Hunter D., RA Zhang H., McKenzie M., Knabel M., Harris A., Allan A., Chen A., Janssen B., RA Plunkett B., Dwamena C., Voogd C., Leif D., Lafferty D., Souleyre E., RA Varkonyi-Gasic E., Gambi F., Hanley J., Yao J.-L., Cheung J., David K., RA Warren B., Marsh K., Snowden K., Lin-Wang K., Brian L., RA Martinez-Sanchez M., Wang M., Ileperuma N., Macnee N., Campin R., RA McAtee P., Drummond R., Espley R., Ireland H., Wu R., Atkinson R., RA Karunairetnam S., Bulley S., Chunkath S., Hanley Z., Storey R., RA Thrimawithana A., Thomson S., David C., Testolin R.; RT ; RL Submitted (20-JUL-2017) to the INSDC. RL New Cultivar Innovation, The New Zealand Institute for Plant and Food RL Research Ltd, 120 Mount Albert Road, Auckland 1025, New Zealand XX DR BioSample; SAMN07269859. XX CC The Actinidia chinensis var. chinensis whole genome shotgun (WGS) CC project has the project accession NKQK00000000. This version of CC the project (01) has the accession number NKQK01000000, and CC consists of sequences NKQK01000001-NKQK01001234. CC CC ##Genome-Annotation-Data-START## CC Annotation Date :: 22-JUN-2017 CC Annotation Method :: Apollo 2 and multiple lines of RNASeq CC evidence was used to manually curate CC AUGUSTUS3 ab initio predictions and CC alignments of gene models from a closely CC related genotype as well as to create new CC models based on RNASeq and BLASTp analysis CC where no predictions existed. Models were CC assigned a manual annotation quality score CC of 0, 1, or 3 based on presence of physical CC evidence and BLASTp comparison to NCBI CC RefSeq Plant 76 CC Annotation Provider :: The New Zealand Institute for Plant and Food CC Research Ltd CC Annotation Version :: Release 220617171606 CC ##Genome-Annotation-Data-END## CC CC ##Genome-Assembly-Data-START## CC Assembly Date :: 21-JUN-2017 CC Assembly Method :: Anytag v. 2.5.2; Newbler v. 2.9; SSPACE2 CC v. 2.0 CC Assembly Name :: Red5_PS1_1.69.0 CC Expected Final Version :: yes CC Genome Coverage :: 90.0x CC Sequencing Technology :: Illumina HiSeq CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1234 FT /organism="Actinidia chinensis var. chinensis" FT /cultivar="Red5" FT /variety="chinensis" FT /mol_type="genomic DNA" FT /country="New Zealand: Te Puke" FT /sex="female" FT /tissue_type="young leaf" FT /db_xref="taxon:1590841" XX WGS NKQK01000001-NKQK01001234 XX CON CM009654-CM009682 //