ID   OWK55308; SV 1; linear; genomic DNA; WGS; VRT; 2949 BP.
XX
PA   MUZQ01000208.1
XX
PR   Project:PRJNA369279;
XX
DT   07-JUL-2017 (Rel. 133, Created)
DT   12-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE   Lonchura striata domestica (Bengalese finch) Nuclear factor NF-kappa-B p105
DE   subunit
XX
KW   WGS.
XX
OS   Lonchura striata domestica (Bengalese finch)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae;
OC   Estrildinae; Lonchura.
XX
RN   [1]
RA   Colquitt B.M., Brainard M.S.;
RT   "Genome of assembly of the Bengalese finch, Lonchura striata domestica";
RL   Unpublished.
XX
RN   [2]
RA   Colquitt B.M., Brainard M.S.;
RT   ;
RL   Submitted (27-MAY-2017) to the INSDC.
RL   Physiology, HHMI/UCSF, 675 Nelson Rising Ln, San Francisco, CA 94158, USA
XX
DR   MD5; 4be029d5f4f585f86d1e62d10cd44b40.
DR   BioSample; SAMN06283872.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2949
FT                   /organism="Lonchura striata domestica"
FT                   /sub_species="domestica"
FT                   /isolate="white83orange57"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:California, San Francisco"
FT                   /lat_lon="37.46 N 122.23 W"
FT                   /isolation_source="blood"
FT                   /collection_date="Jun-2014"
FT                   /db_xref="taxon:299123"
FT   CDS             join(MUZQ01000208.1:638581..638625,
FT                   MUZQ01000208.1:639791..639875,
FT                   MUZQ01000208.1:647152..647192,
FT                   MUZQ01000208.1:649556..649654,
FT                   MUZQ01000208.1:656640..656788,
FT                   MUZQ01000208.1:658284..658447,
FT                   MUZQ01000208.1:659221..659379,
FT                   MUZQ01000208.1:660971..661075,
FT                   MUZQ01000208.1:662925..663016,
FT                   MUZQ01000208.1:663585..663723,
FT                   MUZQ01000208.1:666138..666260,
FT                   MUZQ01000208.1:667187..667273,
FT                   MUZQ01000208.1:668099..668296,
FT                   MUZQ01000208.1:671317..671458,
FT                   MUZQ01000208.1:674578..674692,
FT                   MUZQ01000208.1:676665..676866,
FT                   MUZQ01000208.1:678518..678687,
FT                   MUZQ01000208.1:679517..679619,
FT                   MUZQ01000208.1:680525..680649,
FT                   MUZQ01000208.1:681484..681550,
FT                   MUZQ01000208.1:681870..682042,
FT                   MUZQ01000208.1:682175..682352,
FT                   MUZQ01000208.1:683979..684166)
FT                   /codon_start=1
FT                   /gene="NFKB1"
FT                   /locus_tag="RLOC_00002696"
FT                   /product="Nuclear factor NF-kappa-B p105 subunit"
FT                   /db_xref="GOA:A0A218UNW8"
FT                   /db_xref="InterPro:IPR000451"
FT                   /db_xref="InterPro:IPR000488"
FT                   /db_xref="InterPro:IPR002110"
FT                   /db_xref="InterPro:IPR002909"
FT                   /db_xref="InterPro:IPR008967"
FT                   /db_xref="InterPro:IPR011029"
FT                   /db_xref="InterPro:IPR011539"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014756"
FT                   /db_xref="InterPro:IPR020683"
FT                   /db_xref="InterPro:IPR030492"
FT                   /db_xref="InterPro:IPR030503"
FT                   /db_xref="InterPro:IPR032397"
FT                   /db_xref="InterPro:IPR033926"
FT                   /db_xref="InterPro:IPR036770"
FT                   /db_xref="InterPro:IPR037059"
FT                   /db_xref="UniProtKB/TrEMBL:A0A218UNW8"
FT                   /protein_id="OWK55308.1"
FT                   /translation="MAAEDSYIMGVSDPQMFTVDQFMGMNALFNSTNYITADLPLRTAD
FT                   GPYLQIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQL
FT                   VTNGKYVHLHAHSLVGKFCEDGVCTVIAGPKDMVVGFANLGILHVTKKKVFETLETRMI
FT                   DACKKGYNPGLLVHPELSYLQAEGCEDRQLTEREREIIRQAAIQQTKDMDLSVVRLMFT
FT                   AFLPDSNGSFTRRLDPVISDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQ
FT                   KDDIQIRFYEEDENGGMWEGFGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRR
FT                   KSDLETSEPKPFLYYPEIKDKEEVQRKRQKLMPNFSDGYGGGSGTGGGGMYGGAGGSAG
FT                   SGFSFPSYGYSAFGGMHFPGTTKSSAGMKHEGLSNCTAEQDRKSCDKQNDQWDMKCDMK
FT                   AEAMERTECRTSAVNEKKEDSVFSCKTEASKADCRWRDALFLEKAMQLARRHCNALFDY
FT                   AVTGDVKMLLAAQRHLTAVQDDNGDNVLHLAIIHLHRDLVKNLLEVMPDLNYNDIINMR
FT                   NDLYQTPLHLAVITKQAKVVEDLLKAGADVSLLDRHGNSVLHLAATEGDDKILSLLLRH
FT                   ENVSPMVNLPNAEGLSAIHMVVMANSMSCLKQLIAAGINVNAQEQKSGRTALHLAVEQE
FT                   NIPLAGCLLLEGDADVDSTTYDGTTPLHIAAGRGSTKLAAVLKAAGANPHIENFEPLFD
FT                   LDYVKEDEDDDEGIVPGTTPLDMAANSEVYDILNGKPYESAEVLEDLLTQGHLRELNEN
FT                   SKMQLYKLLELPDPTKNWSTLAQKLGLGILNNAFRLSPSPSKTLLDNYEVSGGTVQELI
FT                   TALRQMDHTEAIAIIQEALSISRRPSPREDSTAKALPSSSPLTFANGETGELCNSRFQD
FT                   LESTCDSGVETSFRKLSFTSSDSLTSKSSLTLGKMALGYGHESSGQSNYIAD"
XX
SQ   Sequence 2949 BP; 889 A; 647 C; 725 G; 688 T; 0 other;
     atggcagcag aagattccta cattatggga gtatctgatc cccaaatgtt tacggtggat        60
     cagttcatgg gaatgaatgc tttatttaac agcacgaatt acatcactgc agacttacca       120
     ctacgaacag cagatggacc atatcttcaa atcatagaac agccaaaaca gaggggattt       180
     cgtttccgat atgtatgtga agggccttca cacggtggac ttcctggtgc ctctagtgaa       240
     aagaacaaaa aatcataccc tcaagtcaaa atctgcaatt atgttggacc tgcaaaagtg       300
     attgtccagt tagtgactaa tgggaaatac gtccacttgc acgctcacag cttggtgggt       360
     aaattctgcg aagacggagt gtgcacggtt attgcaggac ccaaggacat ggttgtaggg       420
     tttgcaaatc ttggaatact tcatgtcaca aagaagaagg tgtttgaaac tctggaaaca       480
     cgcatgatag atgcttgcaa gaagggatac aacccaggac tcctggtgca tccagaactc       540
     agctatctgc aggctgaagg atgtgaagac aggcagctaa ctgaacggga aagagaaatc       600
     atccgccagg cagccataca gcagaccaag gacatggatc tcagcgtggt gcggctcatg       660
     ttcacagcct tccttcccga cagcaatggc agcttcacac ggagactcga tcccgtaata       720
     tcggatgcaa tatatgacag caaagctccc aatgcctcca acctaaaaat tgtaagaatg       780
     gacagaacag cagggtgtgt gacaggaggg gaagagattt acctgctctg tgacaaagtt       840
     cagaaagatg atattcaaat acgtttctat gaagaggatg agaatggcgg tatgtgggaa       900
     ggctttggag atttttctcc tacggatgta catagacagt ttgctattgt gttcaaaaca       960
     cccaaatacc gagatgtcaa tatcacaaag ccagcatctg tgtttgtaca actgcgtagg      1020
     aaatctgatc tagaaacaag cgaaccaaag ccttttctct actatccaga aatcaaagat      1080
     aaagaagaag tgcaaaggaa acgacagaag ctcatgccga acttctctga tggctatggc      1140
     ggaggcagtg gcactggagg tggcggcatg tatggagggg caggtggcag tgctggctct      1200
     gggttcagtt ttccttcata tggatactct gcttttggag ggatgcattt ccctggcaca      1260
     acaaagtcca gtgctggcat gaaacatgaa ggtctatcaa attgcacagc tgaacaagac      1320
     agaaagagct gtgataaaca aaatgaccaa tgggacatga aatgtgacat gaaggcggaa      1380
     gccatggaga ggactgagtg cagaacgtct gctgttaatg agaaaaagga ggattctgtt      1440
     ttttcctgta aaacagaagc aagcaaagca gattgcaggt ggcgggatgc tctgttcctg      1500
     gagaaggcca tgcagcttgc caggcgccac tgcaacgctc tcttcgatta tgccgtaact      1560
     ggagacgtga agatgctgtt ggcagctcag cgccatctca cagctgtcca ggatgataat      1620
     ggggacaatg tccttcattt agcaattatc caccttcata gagatctggt gaaaaacctc      1680
     ctggaagtga tgcccgattt gaattacaat gacatcatta acatgagaaa tgacctctat      1740
     cagacccccc tgcacttggc agtaatcaca aagcaggcaa aggtggtgga agacttgctg      1800
     aaggctggag cagatgtcag ccttctggat cgccacggca attctgtctt acatttagct      1860
     gctactgaag gagatgacaa gattttgagt ctactcctca ggcatgagaa cgtatctccc      1920
     atggtcaacc tccccaatgc tgaaggtctc agtgcaattc acatggtggt gatggcaaat      1980
     agcatgtcct gcctgaaaca gctgattgct gctggaatta atgtcaatgc tcaggaacaa      2040
     aaatctggac gaactgcact gcacttggct gttgaacaag agaacatccc cttagcaggc      2100
     tgccttttgc ttgagggtga tgcagatgtg gacagcacta catatgatgg gacaactcct      2160
     cttcacatag cagctggaag gggctcaaca aaattggcag cagttctcaa agcagcaggt      2220
     gcaaatcctc acattgagaa ctttgagcca ttgtttgact tagattatgt gaaagaggat      2280
     gaagatgatg atgaagggat tgtgcctgga acaacaccac tggatatggc agccaactct      2340
     gaggtgtatg acatattaaa tggcaaaccc tacgagtcag cagaggtttt ggaggactta      2400
     ctcacacaag gacatttgag agagctgaat gagaattcca agatgcagct ttacaaacta      2460
     ttggaattac ctgatccaac caaaaactgg tccaccctag cacaaaaact gggtcttggc      2520
     atacttaata atgccttcag gttgagccct tccccatcga agactctgct ggataactat      2580
     gaggtgtctg gtggtacagt tcaagaactg atcactgctt tgagacagat ggatcacaca      2640
     gaagccatag caataattca ggaagcactg tccatctcac gcagaccatc tccccgggaa      2700
     gacagcacag caaaagctct tccatcatca tcaccgctca cctttgcaaa tggagagaca      2760
     ggtgagctct gtaatagcag attccaagac ctcgaaagta cctgtgacag tggtgtggag      2820
     acctccttcc gcaagctgag cttcacttcc tcagactctc tgaccagcaa gtcctcacta      2880
     acacttggca aaatggccct gggctatgga catgaaagtt cagggcaaag caattacata      2940
     gctgactag                                                              2949
//