ID OWK55308; SV 1; linear; genomic DNA; WGS; VRT; 2949 BP. XX PA MUZQ01000208.1 XX PR Project:PRJNA369279; XX DT 07-JUL-2017 (Rel. 133, Created) DT 12-JUL-2017 (Rel. 133, Last updated, Version 2) XX DE Lonchura striata domestica (Bengalese finch) Nuclear factor NF-kappa-B p105 DE subunit XX KW WGS. XX OS Lonchura striata domestica (Bengalese finch) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; OC Estrildinae; Lonchura. XX RN [1] RA Colquitt B.M., Brainard M.S.; RT "Genome of assembly of the Bengalese finch, Lonchura striata domestica"; RL Unpublished. XX RN [2] RA Colquitt B.M., Brainard M.S.; RT ; RL Submitted (27-MAY-2017) to the INSDC. RL Physiology, HHMI/UCSF, 675 Nelson Rising Ln, San Francisco, CA 94158, USA XX DR MD5; 4be029d5f4f585f86d1e62d10cd44b40. DR BioSample; SAMN06283872. XX FH Key Location/Qualifiers FH FT source 1..2949 FT /organism="Lonchura striata domestica" FT /sub_species="domestica" FT /isolate="white83orange57" FT /mol_type="genomic DNA" FT /country="USA:California, San Francisco" FT /lat_lon="37.46 N 122.23 W" FT /isolation_source="blood" FT /collection_date="Jun-2014" FT /db_xref="taxon:299123" FT CDS join(MUZQ01000208.1:638581..638625, FT MUZQ01000208.1:639791..639875, FT MUZQ01000208.1:647152..647192, FT MUZQ01000208.1:649556..649654, FT MUZQ01000208.1:656640..656788, FT MUZQ01000208.1:658284..658447, FT MUZQ01000208.1:659221..659379, FT MUZQ01000208.1:660971..661075, FT MUZQ01000208.1:662925..663016, FT MUZQ01000208.1:663585..663723, FT MUZQ01000208.1:666138..666260, FT MUZQ01000208.1:667187..667273, FT MUZQ01000208.1:668099..668296, FT MUZQ01000208.1:671317..671458, FT MUZQ01000208.1:674578..674692, FT MUZQ01000208.1:676665..676866, FT MUZQ01000208.1:678518..678687, FT MUZQ01000208.1:679517..679619, FT MUZQ01000208.1:680525..680649, FT MUZQ01000208.1:681484..681550, FT MUZQ01000208.1:681870..682042, FT MUZQ01000208.1:682175..682352, FT MUZQ01000208.1:683979..684166) FT /codon_start=1 FT /gene="NFKB1" FT /locus_tag="RLOC_00002696" FT /product="Nuclear factor NF-kappa-B p105 subunit" FT /db_xref="GOA:A0A218UNW8" FT /db_xref="InterPro:IPR000451" FT /db_xref="InterPro:IPR000488" FT /db_xref="InterPro:IPR002110" FT /db_xref="InterPro:IPR002909" FT /db_xref="InterPro:IPR008967" FT /db_xref="InterPro:IPR011029" FT /db_xref="InterPro:IPR011539" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014756" FT /db_xref="InterPro:IPR020683" FT /db_xref="InterPro:IPR030492" FT /db_xref="InterPro:IPR030503" FT /db_xref="InterPro:IPR032397" FT /db_xref="InterPro:IPR033926" FT /db_xref="InterPro:IPR036770" FT /db_xref="InterPro:IPR037059" FT /db_xref="UniProtKB/TrEMBL:A0A218UNW8" FT /protein_id="OWK55308.1" FT /translation="MAAEDSYIMGVSDPQMFTVDQFMGMNALFNSTNYITADLPLRTAD FT GPYLQIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQL FT VTNGKYVHLHAHSLVGKFCEDGVCTVIAGPKDMVVGFANLGILHVTKKKVFETLETRMI FT DACKKGYNPGLLVHPELSYLQAEGCEDRQLTEREREIIRQAAIQQTKDMDLSVVRLMFT FT AFLPDSNGSFTRRLDPVISDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQ FT KDDIQIRFYEEDENGGMWEGFGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRR FT KSDLETSEPKPFLYYPEIKDKEEVQRKRQKLMPNFSDGYGGGSGTGGGGMYGGAGGSAG FT SGFSFPSYGYSAFGGMHFPGTTKSSAGMKHEGLSNCTAEQDRKSCDKQNDQWDMKCDMK FT AEAMERTECRTSAVNEKKEDSVFSCKTEASKADCRWRDALFLEKAMQLARRHCNALFDY FT AVTGDVKMLLAAQRHLTAVQDDNGDNVLHLAIIHLHRDLVKNLLEVMPDLNYNDIINMR FT NDLYQTPLHLAVITKQAKVVEDLLKAGADVSLLDRHGNSVLHLAATEGDDKILSLLLRH FT ENVSPMVNLPNAEGLSAIHMVVMANSMSCLKQLIAAGINVNAQEQKSGRTALHLAVEQE FT NIPLAGCLLLEGDADVDSTTYDGTTPLHIAAGRGSTKLAAVLKAAGANPHIENFEPLFD FT LDYVKEDEDDDEGIVPGTTPLDMAANSEVYDILNGKPYESAEVLEDLLTQGHLRELNEN FT SKMQLYKLLELPDPTKNWSTLAQKLGLGILNNAFRLSPSPSKTLLDNYEVSGGTVQELI FT TALRQMDHTEAIAIIQEALSISRRPSPREDSTAKALPSSSPLTFANGETGELCNSRFQD FT LESTCDSGVETSFRKLSFTSSDSLTSKSSLTLGKMALGYGHESSGQSNYIAD" XX SQ Sequence 2949 BP; 889 A; 647 C; 725 G; 688 T; 0 other; atggcagcag aagattccta cattatggga gtatctgatc cccaaatgtt tacggtggat 60 cagttcatgg gaatgaatgc tttatttaac agcacgaatt acatcactgc agacttacca 120 ctacgaacag cagatggacc atatcttcaa atcatagaac agccaaaaca gaggggattt 180 cgtttccgat atgtatgtga agggccttca cacggtggac ttcctggtgc ctctagtgaa 240 aagaacaaaa aatcataccc tcaagtcaaa atctgcaatt atgttggacc tgcaaaagtg 300 attgtccagt tagtgactaa tgggaaatac gtccacttgc acgctcacag cttggtgggt 360 aaattctgcg aagacggagt gtgcacggtt attgcaggac ccaaggacat ggttgtaggg 420 tttgcaaatc ttggaatact tcatgtcaca aagaagaagg tgtttgaaac tctggaaaca 480 cgcatgatag atgcttgcaa gaagggatac aacccaggac tcctggtgca tccagaactc 540 agctatctgc aggctgaagg atgtgaagac aggcagctaa ctgaacggga aagagaaatc 600 atccgccagg cagccataca gcagaccaag gacatggatc tcagcgtggt gcggctcatg 660 ttcacagcct tccttcccga cagcaatggc agcttcacac ggagactcga tcccgtaata 720 tcggatgcaa tatatgacag caaagctccc aatgcctcca acctaaaaat tgtaagaatg 780 gacagaacag cagggtgtgt gacaggaggg gaagagattt acctgctctg tgacaaagtt 840 cagaaagatg atattcaaat acgtttctat gaagaggatg agaatggcgg tatgtgggaa 900 ggctttggag atttttctcc tacggatgta catagacagt ttgctattgt gttcaaaaca 960 cccaaatacc gagatgtcaa tatcacaaag ccagcatctg tgtttgtaca actgcgtagg 1020 aaatctgatc tagaaacaag cgaaccaaag ccttttctct actatccaga aatcaaagat 1080 aaagaagaag tgcaaaggaa acgacagaag ctcatgccga acttctctga tggctatggc 1140 ggaggcagtg gcactggagg tggcggcatg tatggagggg caggtggcag tgctggctct 1200 gggttcagtt ttccttcata tggatactct gcttttggag ggatgcattt ccctggcaca 1260 acaaagtcca gtgctggcat gaaacatgaa ggtctatcaa attgcacagc tgaacaagac 1320 agaaagagct gtgataaaca aaatgaccaa tgggacatga aatgtgacat gaaggcggaa 1380 gccatggaga ggactgagtg cagaacgtct gctgttaatg agaaaaagga ggattctgtt 1440 ttttcctgta aaacagaagc aagcaaagca gattgcaggt ggcgggatgc tctgttcctg 1500 gagaaggcca tgcagcttgc caggcgccac tgcaacgctc tcttcgatta tgccgtaact 1560 ggagacgtga agatgctgtt ggcagctcag cgccatctca cagctgtcca ggatgataat 1620 ggggacaatg tccttcattt agcaattatc caccttcata gagatctggt gaaaaacctc 1680 ctggaagtga tgcccgattt gaattacaat gacatcatta acatgagaaa tgacctctat 1740 cagacccccc tgcacttggc agtaatcaca aagcaggcaa aggtggtgga agacttgctg 1800 aaggctggag cagatgtcag ccttctggat cgccacggca attctgtctt acatttagct 1860 gctactgaag gagatgacaa gattttgagt ctactcctca ggcatgagaa cgtatctccc 1920 atggtcaacc tccccaatgc tgaaggtctc agtgcaattc acatggtggt gatggcaaat 1980 agcatgtcct gcctgaaaca gctgattgct gctggaatta atgtcaatgc tcaggaacaa 2040 aaatctggac gaactgcact gcacttggct gttgaacaag agaacatccc cttagcaggc 2100 tgccttttgc ttgagggtga tgcagatgtg gacagcacta catatgatgg gacaactcct 2160 cttcacatag cagctggaag gggctcaaca aaattggcag cagttctcaa agcagcaggt 2220 gcaaatcctc acattgagaa ctttgagcca ttgtttgact tagattatgt gaaagaggat 2280 gaagatgatg atgaagggat tgtgcctgga acaacaccac tggatatggc agccaactct 2340 gaggtgtatg acatattaaa tggcaaaccc tacgagtcag cagaggtttt ggaggactta 2400 ctcacacaag gacatttgag agagctgaat gagaattcca agatgcagct ttacaaacta 2460 ttggaattac ctgatccaac caaaaactgg tccaccctag cacaaaaact gggtcttggc 2520 atacttaata atgccttcag gttgagccct tccccatcga agactctgct ggataactat 2580 gaggtgtctg gtggtacagt tcaagaactg atcactgctt tgagacagat ggatcacaca 2640 gaagccatag caataattca ggaagcactg tccatctcac gcagaccatc tccccgggaa 2700 gacagcacag caaaagctct tccatcatca tcaccgctca cctttgcaaa tggagagaca 2760 ggtgagctct gtaatagcag attccaagac ctcgaaagta cctgtgacag tggtgtggag 2820 acctccttcc gcaagctgag cttcacttcc tcagactctc tgaccagcaa gtcctcacta 2880 acacttggca aaatggccct gggctatgga catgaaagtt cagggcaaag caattacata 2940 gctgactag 2949 //