ID   RMX25764; SV 1; linear; genomic DNA; WGS; PRO; 3636 BP.
XX
PA   PTLS01000022.1
XX
PR   Project:PRJNA434601;
XX
DT   13-NOV-2018 (Rel. 138, Created)
DT   13-NOV-2018 (Rel. 138, Last updated, Version 1)
XX
DE   Lactobacillus reuteri DNA-directed RNA polymerase subunit beta'
XX
KW   WGS.
XX
OS   Lactobacillus reuteri
OC   Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC   Lactobacillus.
XX
RN   [1]
RA   Ozcam M., Roos S., Van Pijkeren J.P.;
RT   "The gut symbionts Lactobacillus reuteri R2lc and 2010 encode a polyketide
RT   synthase cluster that activates the mammalian aryl-hydrocarbon receptor";
RL   J Appl Environ Microbiol 0:.
XX
RN   [2]
RA   Ozcam M., Van Pijkeren J.P.;
RT   ;
RL   Submitted (19-FEB-2018) to the INSDC.
RL   Department of Food Science, University of Wisconsin-Madison, 1605 Linden
RL   Drive, Madison, WI 53705, USA
XX
DR   MD5; f8b5423621658cecc66c3e9cab33e842.
DR   BioSample; SAMN08565493.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3636
FT                   /organism="Lactobacillus reuteri"
FT                   /host="rat"
FT                   /strain="R2lc"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1598"
FT   CDS             PTLS01000022.1:74002..77637
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="rpoC"
FT                   /locus_tag="C5O77_03610"
FT                   /product="DNA-directed RNA polymerase subunit beta'"
FT                   /note="Derived by automated computational analysis using
FT                   gene prediction method: Protein Homology."
FT                   /inference="COORDINATES:similar to AA
FT                   sequence:RefSeq:WP_016496592.1"
FT                   /protein_id="RMX25764.1"
FT                   /translation="MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQG
FT                   LFDERIFGPTKDYECACGKYKRIRYKGRVCDRCGVEVTSAKVRRERMGHIELAAPVSHI
FT                   WYFKGIPSRMGLVLDMSPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKAEYG
FT                   DRFKAEMGAAAIQKLLADVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNK
FT                   PEWMVMDVIPVMPPDLRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIV
FT                   QNEKRMLQEAVDALIDNGRRGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSG
FT                   RSVIDVGPSLKLNQMGLPVPMALELFKPFIMHELVKRGLSANVKAAKRKIDRSDDDVFD
FT                   VLEDVIKEHPVLLNRAPTLHRLGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIH
FT                   VPLSDEAQAEARLLMLAAHHILSPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFK
FT                   DTDEAELAYRNDYVSLQTRVGVQVSAFPEKPFTDEQRGKIMVTTVGKLLFNRIMPKDFA
FT                   YINEPTDANIQNGVDDRFFLEPGQDIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTK
FT                   TSQFLDRIKDLGYYESTISGLTTAMSDIHDLPEKPEILDKAQKQVALITKQFRRGLITD
FT                   DERYERVIGAWNDAKDEVQNKLIEHMDIHNPINMMSDSGARGNISNFTQLAGMRGLMAS
FT                   PNGKIMELPVKSNFYEGLSVLEMFISSHGARKGMTDTALKTANSGYLTRRLVDVAQDVV
FT                   VREKDCGTDRGLEVTAITNGNEMIEPLYDRIMGRYTMKSVFDPKTGEKIVGKNVLIDEE
FT                   MAQKIVDAGVKKVTIRSAFTCNTEHGVCERCYGRNAATGDRVEAGEAVGTVAAQSIGEP
FT                   GTQLTLRNFHTGGVAGNDDITQGLPRIQEIVEARNPKGRATITEVTGEVVSIEENPAER
FT                   TKDITIKGETDTRTYTLPITARMKVAEGDFIHRGAPLNEGSIDPKELIQVRDVLSTETY
FT                   LLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKVRVMDPGDTDLLPGQLMDISQFRDANKD
FT                   TLVAGNIPATARPVILGITKAALETNSFLSAASFQETTRVLTDAAIRGKNDPLVGLKEN
FT                   VIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDIEAKLKEEDKQN"
XX
SQ   Sequence 3636 BP; 1084 A; 665 C; 812 G; 1075 T; 0 other;
     ttgattgatg tcaataaatt tgaaagtatg cagatcggtc tggcatctcc agataagatc        60
     cgtagttggt catatgggga agttaaaaag cccgagacta ttaactaccg gacattaaag       120
     ccagaaaagc aaggtctgtt tgacgaacga atctttggcc caaccaagga ttacgaatgt       180
     gcgtgtggaa agtacaagcg tatccgttac aaaggtcgtg tttgtgaccg ttgtggtgtt       240
     gaggttacta gtgcaaaagt tcgtcgtgaa cggatggggc acattgaatt agctgctcct       300
     gtatctcaca tttggtactt taaaggaatt ccaagtcgaa tgggacttgt attagatatg       360
     agtccacgtt cgcttgaaga agttatctac tttgcttcat atgttgttct tgatccaggt       420
     gatactccac ttgaaaagaa acaactttta actgaagctg aatatcgtga taaaaaagca       480
     gaatatggtg accgtttcaa agctgaaatg ggagctgctg ctattcaaaa acttttagct       540
     gatgttgact tagaaaaaga agctgctgaa ttaaaagaag aattgaaaga agccactggt       600
     caaaaacgga ctcgtgctat tcgtcgtctt gatattcttg aagctttcat taagtcagga       660
     aacaagcctg aatggatggt tatggatgta attccagtta tgccacctga cttgcggcca       720
     atggttcaac ttgaaggggg acgttttgct acctccgatt tgaacgattt atatcggcgg       780
     gttattaacc gtaataaccg attaaaacga cttcttaaat tacaagcacc tggaattatt       840
     gttcaaaatg aaaaacggat gcttcaagaa gcggttgatg cattaatcga taatggtcgc       900
     cgcggacgtc cagtagctgg accaggtaac cgtccattga agtcactttc tcacttactt       960
     aagggtaagc aaggacgttt ccgtcaaaac ttgctaggta agcgtgttga ctactctggt      1020
     cgttctgtta ttgatgttgg tccatcattg aagttgaacc aaatgggatt accagttcca      1080
     atggcacttg aattattcaa gccatttatt atgcatgaat tggtaaagcg tggtctttcc      1140
     gctaacgtta aagctgctaa gcgtaagatt gatcgtagtg atgatgatgt ctttgatgta      1200
     ttggaagacg ttattaagga acacccagtt ctattgaacc gggcccctac tcttcaccgg      1260
     ttaggtatcc aagcgttcga accaatcttg gtttccggta agtcaatgcg tcttcaccca      1320
     ttagtatgtt cagcatataa cgctgacttt gatggggacc agatggctat tcacgttcca      1380
     ttatctgatg aagctcaagc ggaagcacgt ttgttaatgc ttgctgctca ccatattctt      1440
     agtcctcgtg acggagaacc tattgtttca ccatcacagg atatggttat tggtaactac      1500
     tacatgacta ctgaagataa gggtcgtgaa ggtgaaggaa tgatcttcaa ggatactgat      1560
     gaagctgaac ttgcttaccg caatgactat gtttcattac aaacgcgtgt tggagttcaa      1620
     gtatctgcat tccctgaaaa gccatttact gatgaacaac gaggcaagat catggtgaca      1680
     actgttggta agcttctttt caaccgaatt atgccaaaag attttgctta cattaacgaa      1740
     ccaacagatg caaatattca aaatggtgtt gatgatcgtt tcttccttga acctggtcaa      1800
     gatatccatg aataccttga aaatgcacca ttagttccac catttaagaa gggcttccta      1860
     tctgacttga tcgctgaagt atataagcgt tacaaagtta caaagacgtc ccaattctta      1920
     gaccgtatta aggacttagg ttactacgaa tcaactattt ctggtttaac tactgctatg      1980
     tctgatattc atgatttacc agaaaaacca gaaattcttg ataaggcaca aaagcaagtt      2040
     gctttaatta ctaagcaatt ccgtcgtggt ttaattacag acgacgaacg ttatgaacga      2100
     gtaatcggtg catggaacga tgctaaggat gaagttcaaa acaagttaat tgaacacatg      2160
     gatatccata acccaattaa tatgatgtcc gactctggtg cgcggggtaa catttcaaac      2220
     tttactcagt tagccggaat gcgtggattg atggcatcac caaacggtaa gattatggaa      2280
     ttacctgtta agtcaaactt ctatgaagga ctttcagtgt tggaaatgtt tatttcatca      2340
     cacggtgctc gtaaaggtat gactgataca gccttgaaga ctgccaactc aggttactta      2400
     actcgtcgtc ttgttgatgt tgcgcaagat gtggttgttc gtgaaaaaga ctgtggtact      2460
     gatcgtggac ttgaagttac tgctattacg aacggtaacg aaatgattga accactttat      2520
     gatcggatca tgggtcgtta cactatgaag tctgtctttg atcctaagac tggtgaaaag      2580
     attgttggta aaaatgttct tatcgacgaa gaaatggcgc aaaagatcgt tgatgcagga      2640
     gtaaagaaag taactattcg ttcagcattt acttgtaaca ctgaacacgg tgtatgtgaa      2700
     cgttgttacg gacggaacgc agccactggt gaccgtgtag aagctggtga agctgttgga      2760
     actgttgccg ctcaatcaat tggtgaacca ggtactcagt taacacttcg taacttccac      2820
     actggtgggg ttgctggtaa cgatgatatt actcaaggtc ttcctcgtat tcaagaaatt      2880
     gttgaagcac gtaatcctaa aggtcgtgca acaattacag aggttactgg tgaagttgta      2940
     tctattgaag aaaatcctgc tgaacggact aaagatatta cgattaaggg tgaaactgat      3000
     acccgaactt acacacttcc aattacggca cgaatgaaag ttgctgaagg tgactttatt      3060
     caccgtggcg caccgttaaa tgaaggttcg attgatccta aggaattaat ccaggttcgt      3120
     gatgtccttt ctactgaaac ttacctctta tcacaagttc aaggtgttta ccggatgcag      3180
     ggtattgatt tgttagataa gcacgttgaa attatgattc gtcagatgat gcggaaagtt      3240
     cgtgttatgg atccaggtga taccgatctt ctacctggtc aattaatgga tatcagtcaa      3300
     ttccgtgatg ctaacaagga tacattagtt gccggtaata ttcctgcaac cgctcgtcca      3360
     gttattcttg gtattactaa ggccgccttg gagacaaata gtttcttatc agctgcttca      3420
     ttccaagaaa ctacacgtgt attaactgat gctgctattc gtggtaagaa tgatccatta      3480
     gttggattga aagaaaatgt tattattggt aagattattc ctgcaggtac tggtatgagt      3540
     gcttaccgga acattaagcc aaaagaagtt agtgtagctg cttactcaat taaagatatt      3600
     gaggctaagt taaaagaaga agataagcaa aactaa                                3636
//