Strain Subdoligranulum variabile TSDC16.1-1.2 was isolated from the fecal microbiota of a USA female at day 0 . The species name was assigned as the most abundant genus/species associated with a given cluster of genomes (with a cluster containing all strains with a coverage score >0.50). The genome was sequenced with paired-end 101bp reads on an Illumina HiSeq 2000. Genome length is 3627900. Coverage is 75.4x. N50 contig size is 26168.