Here, we sequenced and de novo assembled 38 high-fidelity reference genomes of Solanaceae; Please note: All data are released, and we encourage you to reuse this data; However, we are in the process of constructing haplotype-resolved genome assembly, so to avoid duplicating effort, please contact us if you are interested in (wuyaoyao@caas.cn; huangsanwen@caas.cn); Please use this data to advance your study; Please cite "Wu, Yaoyao, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell (2023)."