Introduction
The Epigenome Reference Registry, aka EpiRR, serves as a registry for datasets grouped in reference epigenomes and their respective metadata, including direct links to the raw data in public sequence archives. IHEC reference epigenomes must meet the minimum the criteria listed here and any associated metadata should comply with the IHEC specifications described here.
Accessing EpiRR data
EpiRR REST API provides language agnostic bindings to the EpiRR data, which you can access from https://www.ebi.ac.uk/epirr/docs
EpiRR Submissions
Submissions to EpiRR can be arranged by contacting epirr@ebi.ac.uk. Submissions are accepted as either JSON or custom text format files, where one file must be used per reference epigenome. For more information on EpiRR submissions, please visit the EpiRR Github repository .
Data Summary
Project | Complete | Partial | Total |
---|---|---|---|
AMED-CREST | 20 | 258 | 278 |
BLUEPRINT | 112 | 1137 | 1249 |
CEEHRC | 144 | 342 | 486 |
DEEP | 54 | 103 | 157 |
ENCODE | 96 | 119 | 215 |
EpiHK | 1 | 18 | 19 |
GIS | 0 | 291 | 291 |
Korea Epigenome Project (KNIH) | 0 | 37 | 37 |
NIH Roadmap Epigenomics | 27 | 120 | 147 |