IHECRE00000928.2 PREVIOUS JSON  


Type Single donor
Status Complete
Project NIH Roadmap Epigenomics
Description REMC Epigenome (Class 2) for Ovary using donors/samples:STL002
Live version IHECRE00000928.7
Previous versions IHECRE00000928.1  

Metadata


Biomaterial type Primary Tissue
Tissue type Ovary
Donor id STL002
Taxon id 9606
Species Homo sapiens
Disease iron deficiency, bipolar
Donor ethnicity Caucasian
Donor age 30
Collection method Autopsy
Donor sex Female
Tissue depot N/A
Biomaterial provider Shin Lin, Stanford University
Donor health status iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)

Raw data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
RNA-Seq mRNA-Seq GEO GSM1010948 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1010948
Bisulfite-Seq DNA Methylation GEO GSM1010980 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1010980
Bisulfite-Seq DNA Methylation GEO GSM1120323 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1120323
ChIP-Seq Histone H3K4me3 GEO GSM1220291 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1220291
ChIP-Seq ChIP-Seq Input GEO GSM1013171 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1013171
ChIP-Seq Histone H3K27ac GEO GSM956009 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM956009
ChIP-Seq Histone H3K9me3 GEO GSM1013162 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1013162
ChIP-Seq Histone H3K36me3 GEO GSM1013143 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1013143
ChIP-Seq Histone H3K4me1 GEO GSM1013148 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1013148
ChIP-Seq Histone H3K27me3 GEO GSM1220284 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1220284
DNase-Hypersensitivity Chromatin Accessibility GEO GSM1027334 None http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1027334