IHECRE00001030.1 PREVIOUS JSON
| Type | Single donor |
| Status | Partial |
| Project | NIH Roadmap Epigenomics |
| Description | REMC Epigenome (Class 2) for Esophagus using donors/samples:STL003 |
| Live version | IHECRE00001030.7 |
Metadata
| Sample alias | STL003EG-01 |
| Biomaterial type | Primary Tissue |
| Tissue type | Esophagus |
| Donor id | STL003 |
| Taxon id | 9606 |
| Species | Homo sapiens |
| Disease | None |
| Donor ethnicity | Caucasian |
| Donor age | 34 |
| Collection method | Autopsy |
| Donor sex | Male |
| Tissue depot | N/A |
| Biomaterial provider | Shin Lin, Stanford University |
| Sample common name | Esophagus |
| Donor health status | polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer) |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ChIP-Seq | Histone H3K9me3 | GEO | GSM910584 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910584 |
| ChIP-Seq | ChIP-Seq Input | GEO | GSM906415 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM906415 |
| Bisulfite-Seq | DNA Methylation | GEO | GSM983649 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM983649 |
| ChIP-Seq | Histone H3K4me3 | GEO | GSM910578 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910578 |
| RNA-Seq | mRNA-Seq | GEO | GSM1010956 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1010956 |
| ChIP-Seq | Histone H3K4me1 | GEO | GSM910573 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910573 |
| ChIP-Seq | Histone H3K27me3 | GEO | GSM906399 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM906399 |
| ChIP-Seq | Histone H3K36me3 | GEO | GSM910567 | None | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM910567 |