IHECRE00001805.2 PREVIOUS JSON
| Type | Composite |
| Status | Complete |
| Project | ENCODE |
| Description | Reference epigenome for mouse forebrain (15.5 day embryonic) |
| Live version | IHECRE00001805.7 |
| Previous versions | IHECRE00001805.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Disease ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor life stage | embryonic |
| Donor ethnicity | NA |
| Donor sex | Mixed |
| Tissue type | forebrain |
| Donor age unit | day |
| Taxon id | 10090 |
| Species | Mus musculus |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON:0001890 |
| Disease | Healthy |
| Donor age | 15 |
| Collection method | unknown |
| Tissue depot | Len Pennacchio at Joint Genome Institute |
| Ddonor health status ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor health status | Healthy |
| Biomaterial provider | Len Pennacchio at Joint Genome Institute |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ATAC-seq | Other | ENCODE | ENCSR976LWP | None | https://www.encodeproject.org/experiments/ENCSR976LWP |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR668BBX | None | https://www.encodeproject.org/experiments/ENCSR668BBX |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR019HJV | None | https://www.encodeproject.org/experiments/ENCSR019HJV |
| RNA-Seq | RNA-Seq | ENCODE | ENCSR752RGN | None | https://www.encodeproject.org/experiments/ENCSR752RGN |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR437SFX | None | https://www.encodeproject.org/experiments/ENCSR437SFX |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR880HDV | None | https://www.encodeproject.org/experiments/ENCSR880HDV |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR691NQH | None | https://www.encodeproject.org/experiments/ENCSR691NQH |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR564XSR | None | https://www.encodeproject.org/experiments/ENCSR564XSR |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR875KRK | None | https://www.encodeproject.org/experiments/ENCSR875KRK |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR022KDE | None | https://www.encodeproject.org/experiments/ENCSR022KDE |
| ChIP-Seq | Histone H3K9ac | ENCODE | ENCSR717XCU | None | https://www.encodeproject.org/experiments/ENCSR717XCU |
| ChIP-Seq | Histone H3K4me2 | ENCODE | ENCSR402ZLE | None | https://www.encodeproject.org/experiments/ENCSR402ZLE |
| RNA-Seq | RNA-Seq | ENCODE | ENCSR758VDY | None | https://www.encodeproject.org/experiments/ENCSR758VDY |