IHECRE00001841.2 PREVIOUS JSON
| Type | Composite |
| Status | Complete |
| Project | ENCODE |
| Description | Reference epigenome for mouse liver (15.5 day embryonic) |
| Live version | IHECRE00001841.6 |
| Previous versions | IHECRE00001841.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Disease ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor life stage | embryonic |
| Donor ethnicity | NA |
| Donor sex | Mixed |
| Tissue type | liver |
| Donor age unit | day |
| Taxon id | 10090 |
| Species | Mus musculus |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON:0002107 |
| Disease | Healthy |
| Donor age | 15 |
| Collection method | unknown |
| Tissue depot | Len Pennacchio at Joint Genome Institute |
| Ddonor health status ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor health status | Healthy |
| Biomaterial provider | Len Pennacchio at Joint Genome Institute |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ATAC-seq | Other | ENCODE | ENCSR465PYP | None | https://www.encodeproject.org/experiments/ENCSR465PYP |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR274AQL | None | https://www.encodeproject.org/experiments/ENCSR274AQL |
| ChIP-Seq | Histone H3K4me2 | ENCODE | ENCSR258RGT | None | https://www.encodeproject.org/experiments/ENCSR258RGT |
| ChIP-Seq | Histone H3K9ac | ENCODE | ENCSR889MYY | None | https://www.encodeproject.org/experiments/ENCSR889MYY |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR577SDJ | None | https://www.encodeproject.org/experiments/ENCSR577SDJ |
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR855NKG | None | https://www.encodeproject.org/experiments/ENCSR855NKG |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR133EGP | None | https://www.encodeproject.org/experiments/ENCSR133EGP |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR510CGB | None | https://www.encodeproject.org/experiments/ENCSR510CGB |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR570HJI | None | https://www.encodeproject.org/experiments/ENCSR570HJI |
| RNA-Seq | RNA-Seq | ENCODE | ENCSR611PTP | None | https://www.encodeproject.org/experiments/ENCSR611PTP |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR479LFP | None | https://www.encodeproject.org/experiments/ENCSR479LFP |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR324NAF | None | https://www.encodeproject.org/experiments/ENCSR324NAF |
| RNA-Seq | RNA-Seq | ENCODE | ENCSR246FZV | None | https://www.encodeproject.org/experiments/ENCSR246FZV |