IHECRE00003703.3 PREVIOUS JSON
| Type | Single donor |
| Status | Complete |
| Project | ENCODE |
| Description | Reference epigenome for mouse limb (10.5 day embryonic) |
| Live version | IHECRE00003703.6 |
| Previous versions | IHECRE00003703.2 IHECRE00003703.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Donor id | ENCDO956IXV |
| Disease ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor life stage | embryonic |
| Donor ethnicity | NA |
| Donor sex | Mixed |
| Tissue type | limb |
| Donor age unit | day |
| Taxon id | 10090 |
| Species | Mus musculus |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON:0002101 |
| Disease | Healthy |
| Donor age | 10 |
| Collection method | unknown |
| Tissue depot | Len Pennacchio at Joint Genome Institute |
| Ddonor health status ontology uri | http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C115935&ns=NCI_Thesaurus |
| Donor health status | Healthy |
| Biomaterial provider | Len Pennacchio at Joint Genome Institute |
Raw data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| ChIP-Seq | Histone H3K9me3 | ENCODE | ENCSR890ACP | None | https://www.encodeproject.org/experiments/ENCSR890ACP |
| Bisulfite-Seq | DNA Methylation | ENCODE | ENCSR377CZO | None | https://www.encodeproject.org/experiments/ENCSR377CZO |
| miRNA-Seq | smRNA-Seq | ENCODE | ENCSR715NEZ | None | https://www.encodeproject.org/experiments/ENCSR715NEZ |
| RNA-Seq | mRNA-Seq | ENCODE | ENCSR968QHO | None | https://www.encodeproject.org/experiments/ENCSR968QHO |
| ChIP-Seq | ChIP-Seq Input | ENCODE | ENCSR687ALB | None | https://www.encodeproject.org/experiments/ENCSR687ALB |
| ChIP-Seq | Histone H3K27me3 | ENCODE | ENCSR906RTN | None | https://www.encodeproject.org/experiments/ENCSR906RTN |
| ChIP-Seq | Histone H3K36me3 | ENCODE | ENCSR242PHH | None | https://www.encodeproject.org/experiments/ENCSR242PHH |
| ChIP-Seq | Histone H3K4me1 | ENCODE | ENCSR238SGC | None | https://www.encodeproject.org/experiments/ENCSR238SGC |
| ChIP-Seq | Histone H3K4me3 | ENCODE | ENCSR318QFY | None | https://www.encodeproject.org/experiments/ENCSR318QFY |
| ChIP-Seq | Histone H3K27ac | ENCODE | ENCSR863VHE | None | https://www.encodeproject.org/experiments/ENCSR863VHE |