-9.5 | | AT1G12080 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-9.1 | | AT1G12080 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-9.1 | | AT1G12080 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-9.1 | | AT1G12080 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-7.4 | | AT1G12080 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-6.8 | | AT1G12080 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-6.5 | | AT1G12080 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-6.1 | | AT1G12080 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-4.7 | | AT1G12080 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '8 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
-4.5 | | AT1G12080 | '100 micromolar; fenclorim' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-4.3 | | AT1G12080 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-4.3 | | AT1G12080 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-4.1 | | AT1G12080 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
4.1 | | AT1G12080 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-3.9 | | AT1G12080 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-3.9 | | AT1G12080 | 'ANAC017 OEb' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-3.9 | | AT1G12080 | 'Plasmodiophora brassicae' vs 'none' at '23 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
-3.9 | | AT1G12080 | 'Meloidogyne incognita infested region' vs 'Meloidogyne incognita non-infested region' at '14 day' | sampling site, time | Transcription profiling by array of Arabidopsis root cells infested with Meloidogyne incognita 14 or 21 days after inoculation |
-3.9 | | AT1G12080 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
3.9 | | AT1G12080 | 'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-3.8 | | AT1G12080 | 'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-3.8 | | AT1G12080 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-3.7 | | AT1G12080 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-3.5 | | AT1G12080 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-3.5 | | AT1G12080 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-3.4 | | AT1G12080 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
3.4 | | AT1G12080 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
-3.3 | | AT1G12080 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-3.3 | | AT1G12080 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-3.3 | | AT1G12080 | '35S::MIF1; dark' vs 'empty pRR2222 vector; dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-3.2 | | AT1G12080 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-3.2 | | AT1G12080 | 'sulfometuron methyl' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with sulfometuron methyl herbicide |
3.2 | | AT1G12080 | '14 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
3.1 | | AT1G12080 | 'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-3.1 | | AT1G12080 | 'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-3.1 | | AT1G12080 | '10 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-3.1 | | AT1G12080 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-3.1 | | AT1G12080 | 'gct-2' vs 'wild type' | genotype | The Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions. |
3.1 | | AT1G12080 | 'NaCl' vs 'control' in 'cortex cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
3 | | AT1G12080 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-2.8 | | AT1G12080 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-2.8 | | AT1G12080 | 'Bla-1 x Hh-0' vs 'Hh-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-2.7 | | AT1G12080 | 'Plasmodiophora brassicae' vs 'none' at '10 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
-2.7 | | AT1G12080 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
-2.7 | | AT1G12080 | 'dcl1-7 mutant' vs 'wild type' in 'Ler' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-2.7 | | AT1G12080 | '100 micromolar; fenclorim' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-2.7 | | AT1G12080 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root endodermis and quiescent center' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
-2.7 | | AT1G12080 | 'apl mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls |
-2.7 | | AT1G12080 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.6 | | AT1G12080 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-2.6 | | AT1G12080 | 'cct-1' vs 'wild type' | genotype | The Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions. |
2.6 | | AT1G12080 | 'mock inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-2.5 | | AT1G12080 | 'drought' vs 'control' in 'wild type; root' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-2.5 | | AT1G12080 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-2.5 | | AT1G12080 | 'ga1-3, brm-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-2.5 | | AT1G12080 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-2.4 | | AT1G12080 | 'gapcp mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for gapcp |
-2.4 | | AT1G12080 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-2.4 | | AT1G12080 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.4 | | AT1G12080 | 'mock inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-2.4 | | AT1G12080 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2.4 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-2.4 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Rschew' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-2.4 | | AT1G12080 | 'rrd2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis temperature-dependent later root fasciation mutants |
-2.4 | | AT1G12080 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
2.4 | | AT1G12080 | 'ams mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for dyt1 or ams |
-2.3 | | AT1G12080 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-2.3 | | AT1G12080 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-2.3 | | AT1G12080 | 'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive' | genotype, phenotype | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
-2.3 | | AT1G12080 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-2.3 | | AT1G12080 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
2.3 | | AT1G12080 | 'met1 mutant' vs 'wild type' at '0 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-2.3 | | AT1G12080 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-2.3 | | AT1G12080 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-2.3 | | AT1G12080 | 'myb21-5, myb24-5 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-2.3 | | AT1G12080 | 'oas-a1.1' vs 'wild type' in 'CdCl2-treated root' at '18 hour' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis mutant for oas-a1 after treatment with cadmium chloride |
-2.2 | | AT1G12080 | '35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
2.2 | | AT1G12080 | 'val1 mutant' vs 'wild type' at '13 days after pollination' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-2.2 | | AT1G12080 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-2.2 | | AT1G12080 | "rps10 RNAi; late onset of silencing (P3)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
-2.2 | | AT1G12080 | 'ga1-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-2.2 | | AT1G12080 | 'ANAC017 OEa' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.1 | | AT1G12080 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-2.1 | | AT1G12080 | 'from low light to high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-2.1 | | AT1G12080 | 'bri1-116 null mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-2.1 | | AT1G12080 | 'bri1-116 null mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
-2.1 | | AT1G12080 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-2.1 | | AT1G12080 | 'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type' | genotype | Transcriptome profiling of LecRKVI.2 over-expressor plants. |
-2.1 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Tenela' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.1 | | AT1G12080 | 'jasmonate' at '22 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
-2.1 | | AT1G12080 | 'polysomal RNA; turnip mosaic virus inoculated' vs 'polysomal RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
-2 | | AT1G12080 | 'drought' vs 'control' in 'camta1-3 mutant; root' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-2 | | AT1G12080 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2 | | AT1G12080 | 'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
2 | | AT1G12080 | 'xrn3-8 mutant' vs 'wild type genotype' at 'immediately after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
-2 | | AT1G12080 | '9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-2 | | AT1G12080 | 'siz1-3' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
-2 | | AT1G12080 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-2 | | AT1G12080 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-2 | | AT1G12080 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-2 | | AT1G12080 | 'drought' vs 'control' in 'wild type; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-2 | | AT1G12080 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2 | | AT1G12080 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-2 | | AT1G12080 | 'ANAC017 OEb' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2 | | AT1G12080 | 'AGL15 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
-2 | | AT1G12080 | 'trichostatin A 2.5 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-2 | | AT1G12080 | 'Meloidogyne incognita infested region' vs 'Meloidogyne incognita non-infested region' at '21 day' | sampling site, time | Transcription profiling by array of Arabidopsis root cells infested with Meloidogyne incognita 14 or 21 days after inoculation |
1.9 | | AT1G12080 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
-1.9 | | AT1G12080 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
-1.9 | | AT1G12080 | 'bak1-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.9 | | AT1G12080 | 'xrn3-8 mutant' vs 'wild type genotype' at '60 minutes after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
1.9 | | AT1G12080 | 'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-1.9 | | AT1G12080 | 'chr11-1 chr17-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis chr11-1 chr17-1 mutants |
1.9 | | AT1G12080 | 'low light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-1.9 | | AT1G12080 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
-1.9 | | AT1G12080 | 'axr3-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.9 | | AT1G12080 | 'auxin resistant pIAA26::IAA26-P108H-GFP transgenic' vs 'control' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pIAA26::IAA26-P108H-GFP transgenic plants |
-1.9 | | AT1G12080 | 'drought stress' vs 'none' in 'control' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.9 | | AT1G12080 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1.8 | | AT1G12080 | 'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
-1.8 | | AT1G12080 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
-1.8 | | AT1G12080 | 'ga1-3 mutant' vs 'wild type' in 'flower bud' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
-1.8 | | AT1G12080 | 'early floral stage 9 to 11; ant-4' vs 'early floral stage 9 to 11; wild type' | developmental stage, genotype | Transcription profiling of pistils from Arabidopsis wild type, ant-4 mutant and ino-1mutant plants at different developmental stages |
1.8 | | AT1G12080 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of injured Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
-1.8 | | AT1G12080 | 'imidazolinone' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with imidazolinone |
-1.8 | | AT1G12080 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
1.8 | | AT1G12080 | 'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control' | genotype | Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 |
-1.8 | | AT1G12080 | '0.125 mM gold for 24 hours' vs 'untreated control' | growth condition | Transcription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold |
-1.8 | | AT1G12080 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.7 | | AT1G12080 | 'abscisic acid; 50 micromolar' vs 'mock' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
1.7 | | AT1G12080 | 'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.7 | | AT1G12080 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.7 | | AT1G12080 | 'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-1.7 | | AT1G12080 | 'high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1.7 | | AT1G12080 | 'wild type; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'wild type; UV-B light regimen (305 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
1.7 | | AT1G12080 | 'hy5' vs 'wild type' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
1.7 | | AT1G12080 | 'oxt6 mutant' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-1.7 | | AT1G12080 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.7 | | AT1G12080 | 'water deprivation' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after water deprivation |
1.7 | | AT1G12080 | 'mbd11 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana |
-1.7 | | AT1G12080 | 'light pulse in the middle of the day' vs 'day time control' | growth condition | RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock |
-1.7 | | AT1G12080 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'petal differentiation and expansion stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-1.7 | | AT1G12080 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-1.7 | | AT1G12080 | 'sodium nitroprusside' vs 'none' | compound | Expression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO |
-1.6 | | AT1G12080 | 'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.6 | | AT1G12080 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1.6 | | AT1G12080 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type genotype' | genotype | RNA-seq of coding RNA of Arabidopsis Phytochrome (phy)-Interacting bHLH Factor (PIF) mutants against wild-type controls to study target genes of PIF |
1.6 | | AT1G12080 | 'C24 x Ler F1 hybrid' vs 'C24 ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.6 | | AT1G12080 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.6 | | AT1G12080 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.6 | | AT1G12080 | '500 micromolar; phosphate' vs 'none' in 'control' | compound, growth condition | Transcription profiling by array of Arabidopsis roots grown with different concentrations of phosphate |
-1.6 | | AT1G12080 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.6 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.6 | | AT1G12080 | 'pp7l-1 loss of function mutant' vs 'wild type genotype' | genotype | SERINE/THREONINE-PROTEIN PHOSPHATASE7-LIKE PP7L Regulates Chloroplast Development |
-1.6 | | AT1G12080 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-1.6 | | AT1G12080 | 'arf7 arf19 double mutant' vs 'wild type' in 'Root Mature Zone' | genotype, organism part | Transcription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19 |
-1.6 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.5 | | AT1G12080 | 'gsnor1' vs 'wild type genotype' in 'none' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-1.5 | | AT1G12080 | 'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar' | stimulus | Ethylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway. |
1.5 | | AT1G12080 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.5 | | AT1G12080 | 'pkl mutant; no compound' vs 'wild type; no compound' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole |
1.5 | | AT1G12080 | 'Ler x C24 F1 hybrid' vs 'C24 ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.5 | | AT1G12080 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.5 | | AT1G12080 | '5 micromolar gibberellin' vs 'water' at 180 minute | growth condition, time | Transcription profiling by array of Arabidopsis expressing PcGA2ox1 after treatment with gibberellin |
1.5 | | AT1G12080 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-1.5 | | AT1G12080 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.5 | | AT1G12080 | 'ein2-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-1.5 | | AT1G12080 | 'rice OsTOP6A1 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing rice OsTOP6A1 |
-1.5 | | AT1G12080 | 'salicylic acid' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-1.5 | | AT1G12080 | 'lug-3 mutant' vs 'wild type' in 'flower' | genotype, organism part | Transcription profiling by array of Arabidopsis lug-3 mutant plants |
-1.5 | | AT1G12080 | '2 hr hypoxia' vs '2 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.5 | | AT1G12080 | 'wnk8-2 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
-1.5 | | AT1G12080 | 'drought' vs 'control' in 'camta1-3 mutant; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-1.5 | | AT1G12080 | '4 degree celsius' vs '20 degree celsius' in 'Columbia-0' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.5 | | AT1G12080 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.5 | | AT1G12080 | 'msh1 albino mutant' vs 'wild type' | genotype | Transcript profiling of Arabidopsis albino msh1 mutants |
-1.5 | | AT1G12080 | 'dde2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.4 | | AT1G12080 | 'gsnor1' vs 'wild type genotype' in 'Phytophthora parasitica' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-1.4 | | AT1G12080 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.4 | | AT1G12080 | 'drought environment' vs 'none' in 'wild type genotype' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
-1.4 | | AT1G12080 | 'drought environment' vs 'none' in 'ahl10-1' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
1.4 | | AT1G12080 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
-1.4 | | AT1G12080 | 'atphb3 anac017' vs 'wild type' | age, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins |
1.4 | | AT1G12080 | 'pepr1-1 Pepr2-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.4 | | AT1G12080 | 'sodium sulfide; des1' vs 'water; des1' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
-1.4 | | AT1G12080 | 'pif4pif5 double mutant; high red/far-red light ratio' vs 'wild type; high red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
-1.4 | | AT1G12080 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'wild type' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
1.4 | | AT1G12080 | '500 micromolar; phosphate' vs 'none' in 'split root' | compound, growth condition | Transcription profiling by array of Arabidopsis roots grown with different concentrations of phosphate |
1.4 | | AT1G12080 | 'TaRZ1 overexpressing line' vs 'wild type' | genotype | Gene expression profile in wheat TaRZ1-expressing Arabidopsis plant |
-1.4 | | AT1G12080 | 'anac017 T-DNA mutant' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-1.4 | | AT1G12080 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
-1.4 | | AT1G12080 | 'triazolopyrimidine' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with triazolopyrimidine |
-1.4 | | AT1G12080 | 'pkl-1' vs 'wild type' | genotype | Identify differentially expressed genes in 14-day-old pkl seedlings |
-1.4 | | AT1G12080 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.4 | | AT1G12080 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
-1.4 | | AT1G12080 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
1.4 | | AT1G12080 | 'chitin' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
1.4 | | AT1G12080 | 'pXVE:HA-EDM2-a' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
-1.4 | | AT1G12080 | 'tor mutant' vs 'wild type' in 'none; 0 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
1.4 | | AT1G12080 | 'wild type; 16 degree celsius' vs 'wild type; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
1.3 | | AT1G12080 | 'hos1-3 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis hos1-3 seedlings |
-1.3 | | AT1G12080 | 'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
-1.3 | | AT1G12080 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.3 | | AT1G12080 | 'hyl1; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
-1.3 | | AT1G12080 | 'mea homozygous knockout' vs 'wild type genotype' in '4 days after pollination; seed' | developmental stage, genotype, organism part | Transcriptome profile of Arabidopsis thaliana wild-type versus mea mutant ovary and seed at different developmental time points |
-1.3 | | AT1G12080 | 'salicylic acid' vs 'none' in 'sdh1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-1.3 | | AT1G12080 | 'arsenic; 200 micromolar' vs 'none' in 'Col-0' | compound, ecotype | Transcriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis |
-1.3 | | AT1G12080 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
-1.3 | | AT1G12080 | 'pif1pif3pif4pif5 (pifq) mutant; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' vs 'wild type; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' | genotype, light, time | Expression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings |
-1.3 | | AT1G12080 | 'pH 4.5' vs 'pH 6' at 8 hour | growth condition, time | Transcription profiling by array of Arabidopsis grown at low pH |
-1.3 | | AT1G12080 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-1.3 | | AT1G12080 | 'lec2-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.3 | | AT1G12080 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-1.3 | | AT1G12080 | 'myb21-5, myb24-5 double mutant' vs 'wild type' at 'petal differentiation and expansion stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
1.3 | | AT1G12080 | 'hy5' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
-1.3 | | AT1G12080 | 'pif4pif5 double mutant; low red/far-red light ratio' vs 'wild type; low red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
-1.3 | | AT1G12080 | 'double mutant APK1/APK2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for apk1 and apk2 |
1.3 | | AT1G12080 | 'cdkf,1-2 T-DNA insertion mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cdkf;1-2 mutant |
1.3 | | AT1G12080 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.3 | | AT1G12080 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.3 | | AT1G12080 | 'L2.4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis expressing mutant forms of beet curly-top virus L2 protein |
-1.3 | | AT1G12080 | 'boric acid 5 millimolar' vs 'none' | compound, dose | Expression data from arabidopsis root in response to boron toxicity |
-1.3 | | AT1G12080 | '3% mannitol' at '4 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
-1.3 | | AT1G12080 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root epidermis and lateral root cap' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
1.3 | | AT1G12080 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.3 | | AT1G12080 | '480 minute' vs '0 minute' in 'control; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.3 | | AT1G12080 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.2 | | AT1G12080 | 'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-3' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
-1.2 | | AT1G12080 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.2 | | AT1G12080 | 'siz1-3' vs 'wild type' in 'drought' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
-1.2 | | AT1G12080 | 'lec1-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.2 | | AT1G12080 | 't-zeatin; SALK_098604, SALK_054752' vs 'DMSO; SALK_098604, SALK_054752' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
-1.2 | | AT1G12080 | 'trans-zeatin; 20 micromolar' vs 'control' in 'arr10 arr12 double mutant' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
-1.2 | | AT1G12080 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.2 | | AT1G12080 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.2 | | AT1G12080 | 'wild type; UV-B light regimen (345 nm); 6 hour; 305nm' vs 'wild type; UV-B light regimen (345 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
-1.2 | | AT1G12080 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
1.2 | | AT1G12080 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-1.2 | | AT1G12080 | '18 hours' vs '15 hours' | time | CPIB Lateral Root timecourse |
1.2 | | AT1G12080 | 'SWP73A overexpression' vs 'wild type genotype' | genotype | Microarray analysis of gene expression level in wild type and SWP73A overexpression Arabidopsis |
-1.2 | | AT1G12080 | 'apum23 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis apum23-1 mutants |
1.2 | | AT1G12080 | 'wnk8-3 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
-1.2 | | AT1G12080 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1.2 | | AT1G12080 | 'prmt4a;4b double mutant' vs 'wild type' | genotype | Genome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes |
-1.2 | | AT1G12080 | 'pft1 mutant' vs 'wild type' in 'control' at '0 hour' | genotype, growth condition, time | pft1 glucose responses |
1.2 | | AT1G12080 | 'NaCl' vs 'control' in 'protophloem cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.2 | | AT1G12080 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
1.2 | | AT1G12080 | '60 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.2 | | AT1G12080 | 'glyphosate' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis treated with glyphosate herbicide |
-1.1 | | AT1G12080 | 'dja6; dja5 double mutant' vs 'wild type genotype' | genotype | RNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana |
-1.1 | | AT1G12080 | 'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
1.1 | | AT1G12080 | 'gul2-1 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
-1.1 | | AT1G12080 | 'double mutant at3g03940/at518190 knockdown' vs 'wild type' | genotype | Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression] |
-1.1 | | AT1G12080 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.1 | | AT1G12080 | 'ahk3/ahk4 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.1 | | AT1G12080 | 'ethanol; 2.5 percent' vs 'control' in 'ethanol-inducible TOC1 transgenic line; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1.1 | | AT1G12080 | 'hen1 mutant' vs 'wild type' in 'Ler' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-1.1 | | AT1G12080 | '4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type' | genotype, growth condition | Gene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h |
-1.1 | | AT1G12080 | 'cngc4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for cngc1, cngc4, or akt1 |
1.1 | | AT1G12080 | 'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA' | fraction, genotype, protocol | Direct RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana |
-1.1 | | AT1G12080 | 'mkk1 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk1 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
1.1 | | AT1G12080 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.1 | | AT1G12080 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; red light' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
-1.1 | | AT1G12080 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.1 | | AT1G12080 | 'tcx2; WOX5:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
1.1 | | AT1G12080 | '6 hours' vs '0 hour' | time | CPIB Lateral Root timecourse |
-1.1 | | AT1G12080 | 'axr3-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.1 | | AT1G12080 | 'LBD37 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
-1.1 | | AT1G12080 | 'top1a-2 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis inflorescences from TOP1a-2 mutants against wild type (Landsberg erecta) controls |
-1.1 | | AT1G12080 | '3% glucose' at '4 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
-1 | | AT1G12080 | 'wounding' at '12 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-1 | | AT1G12080 | 'wounding; 6 hour' vs 'none; 0 hour' in 'DMSO' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1 | | AT1G12080 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1 | | AT1G12080 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
-1 | | AT1G12080 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1 | | AT1G12080 | 'vtc1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
1 | | AT1G12080 | 'mdh mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for mdh |
-1 | | AT1G12080 | '10 micromolar; dexamethasone' vs 'none' at '8 hour' | compound, time | Identifying FIL-response genes |
-1 | | AT1G12080 | 'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' | genotype, light, time | Expression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings |
-1 | | AT1G12080 | 'paclobutrazol; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-1 | | AT1G12080 | 'wild_type; uniconazole' vs 'wild_type; no compound' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole |
-1 | | AT1G12080 | 'estradiol; 2 micromolar' vs 'DMSO' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
-1 | | AT1G12080 | 'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Tsu-1' ecotype | ecotype, organism part, growth condition, time | Transcription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium |
1 | | AT1G12080 | 'bzr1-1D;bri1-116 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1 | | AT1G12080 | '8 hour (light)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
-1 | | AT1G12080 | 'abscisic acid; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-1 | | AT1G12080 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1 | | AT1G12080 | '12 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
-1 | | AT1G12080 | 't-zeatin; Col-0' vs 'DMSO; Col-0' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
-1 | | AT1G12080 | 'trans-zeatin; 20 micromolar' vs 'control' in 'wild type' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
-1 | | AT1G12080 | 'sav3-2' vs 'wild type' in 'continuous white light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sav after an hour of simulated shade. |
1 | | AT1G12080 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KCl' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KCl' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
1 | | AT1G12080 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1 | | AT1G12080 | 'fpgs1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidiopsis inflorescence stems from fpgs1 mutants |
1 | | AT1G12080 | 'psad1-1 stn7-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for psae1, psad1 or stn7, or double mutant for psae1 and stn7 or psad1 and stn7 |
1 | | AT1G12080 | 'dorn1-1 mutant' vs 'wild type' in '100 micromolar ATP' | genotype, growth condition | ATP effect on Arabidopsis roots |
-1 | | AT1G12080 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'epidermis' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
-1 | | AT1G12080 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1 | | AT1G12080 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
1 | | AT1G12080 | 'atx1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for atx1 |
1 | | AT1G12080 | 'ethanol; 2.5 percent' vs 'control' in 'wild type; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1 | | AT1G12080 | 'sav1-1' vs 'wild type' in 'continuous white light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sav after an hour of simulated shade. |
1 | | AT1G12080 | 'wnk8-1 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
1 | | AT1G12080 | '35S::MIF1; dark' vs '35S::MIF1; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-1 | | AT1G12080 | 'iron deprivation' vs 'normal iron condition' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ubc13A or expressing cucumber CsUBC13 under the control of the 35S promoter after iron deprivation |
1 | | AT1G12080 | 'clf28 mutant' vs 'wild type' in 'silique' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
1 | | AT1G12080 | 'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |