-8.8 | | AT1G29660 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-8.4 | | AT1G29660 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-7.8 | | AT1G29660 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-7.4 | | AT1G29660 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-7.1 | | AT1G29660 | '1 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-6.6 | | AT1G29660 | '2 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-6 | | AT1G29660 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-5.5 | | AT1G29660 | '5 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
5.5 | | AT1G29660 | 'rps2 mutant' vs 'wild type genotype' in 'Pseudomonas syringae pv. maculicola carrying AvrRpt2' at '10 hour' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-5.3 | | AT1G29660 | '7 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
5.3 | | AT1G29660 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
-4.7 | | AT1G29660 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-4.7 | | AT1G29660 | '100 micromolar; fenclorim' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-4.7 | | AT1G29660 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
-4.6 | | AT1G29660 | 'water deprivation' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after water deprivation |
-4.3 | | AT1G29660 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-4 | | AT1G29660 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-4 | | AT1G29660 | '10 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-4 | | AT1G29660 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-4 | | AT1G29660 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
-3.9 | | AT1G29660 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-3.9 | | AT1G29660 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
-3.9 | | AT1G29660 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-3.9 | | AT1G29660 | 'water deprivation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-3.9 | | AT1G29660 | 'cabbage leaf curl virus infected' vs 'mock infected' | infect | Transcription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus |
-3.9 | | AT1G29660 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-3.9 | | AT1G29660 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-3.8 | | AT1G29660 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-3.7 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-3.7 | | AT1G29660 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-3.7 | | AT1G29660 | 'drought; abi1td' at '0 hour' vs 'control; abi1td' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-3.6 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-3.6 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-3.6 | | AT1G29660 | 'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none' | time, treatment | Expression profiling of Col-0 treated with Psm:AvrRpt2 |
3.5 | | AT1G29660 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-3.5 | | AT1G29660 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
-3.5 | | AT1G29660 | 'drought' vs 'control' in 'wild type; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-3.5 | | AT1G29660 | 'drought; wild type' at '0 hour' vs 'control; wild type' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-3.4 | | AT1G29660 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
3.4 | | AT1G29660 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
-3.4 | | AT1G29660 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-3.3 | | AT1G29660 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-3.3 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wild type' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-3.3 | | AT1G29660 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
3.3 | | AT1G29660 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
-3.3 | | AT1G29660 | 'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T8”)' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-3.3 | | AT1G29660 | 'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T6”)' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-3.2 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-3.2 | | AT1G29660 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
-3.2 | | AT1G29660 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-3.2 | | AT1G29660 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
-3.2 | | AT1G29660 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-3.2 | | AT1G29660 | '100 micromolar; fenclorim' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-3.1 | | AT1G29660 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
-3.1 | | AT1G29660 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
3 | | AT1G29660 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
3 | | AT1G29660 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-3 | | AT1G29660 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-2.9 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-2.9 | | AT1G29660 | 'Col-0; 350 ppb ozone exposure for 2hr' vs 'Col-0; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-2.9 | | AT1G29660 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
-2.9 | | AT1G29660 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
2.9 | | AT1G29660 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
-2.9 | | AT1G29660 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'leaf' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
-2.9 | | AT1G29660 | 'tor mutant' vs 'wild type' in 'glucose; 15 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
-2.9 | | AT1G29660 | 'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
-2.7 | | AT1G29660 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.7 | | AT1G29660 | 'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
-2.7 | | AT1G29660 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
-2.7 | | AT1G29660 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-2.7 | | AT1G29660 | 'hmr-5 null mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light |
-2.6 | | AT1G29660 | '14 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-2.6 | | AT1G29660 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-2.6 | | AT1G29660 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-2.6 | | AT1G29660 | '9 hr hypoxia' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-2.6 | | AT1G29660 | 'homozygous AtCesA4' vs 'heterozygous AtCesA4' | genotype | Transcription profiling by array of Arabidopsis cellulose synthase mutants |
2.6 | | AT1G29660 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wrky18, wrky40 double mutant' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
-2.5 | | AT1G29660 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
2.5 | | AT1G29660 | 'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
-2.5 | | AT1G29660 | 'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
2.5 | | AT1G29660 | '3% glucose; 0.1% epibrassinolide' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
-2.5 | | AT1G29660 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
2.4 | | AT1G29660 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.4 | | AT1G29660 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.4 | | AT1G29660 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-2.4 | | AT1G29660 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-2.4 | | AT1G29660 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
2.4 | | AT1G29660 | '4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type' | genotype, growth condition | Gene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h |
-2.4 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2.3 | | AT1G29660 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
-2.3 | | AT1G29660 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
2.3 | | AT1G29660 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
-2.3 | | AT1G29660 | 'oligomycin' vs 'control' at '4 hour' | growth condition, time | Effect of oligomycin on transcript levels in Arabidopsis seedling cultures |
-2.3 | | AT1G29660 | '1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
-2.3 | | AT1G29660 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
-2.3 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-2.3 | | AT1G29660 | 'Pseudomonas syringae DC3000' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
-2.3 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2.3 | | AT1G29660 | 'ANAC017 OEa' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.3 | | AT1G29660 | 'flg22' vs 'water' at '1 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
-2.2 | | AT1G29660 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |
-2.2 | | AT1G29660 | '20% inhibition from optimum photosynthesis temperature' vs 'baseline growth temperature' | growth condition | Transcription profiling by array of Arabidopsis after growth at different temperatures |
-2.2 | | AT1G29660 | 'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.2 | | AT1G29660 | 'ethanol; 2.5 percent' vs 'control' in 'ethanol-inducible TOC1 transgenic line; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-2.2 | | AT1G29660 | 'ozone 500 parts per billion' vs 'control' | growth condition | Arabidopsis thaliana response to ozone |
-2.2 | | AT1G29660 | 'ozone 500 parts per billion' vs 'control' | growth condition | Functional Genomics of Ozone Stress in Arabidopsis. |
-2.2 | | AT1G29660 | 'mpk6 knockout; flg22' vs 'mpk6 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 |
-2.2 | | AT1G29660 | 'ANAC017 OEb' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.1 | | AT1G29660 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
2.1 | | AT1G29660 | 'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
2.1 | | AT1G29660 | 'continuous white light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
2.1 | | AT1G29660 | 'lec1-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
2.1 | | AT1G29660 | 'ant-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
2.1 | | AT1G29660 | 'ant-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
-2.1 | | AT1G29660 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
-2.1 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-2.1 | | AT1G29660 | 'antimycin A; 50 micromolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
-2.1 | | AT1G29660 | '24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
-2 | | AT1G29660 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
2 | | AT1G29660 | 'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
2 | | AT1G29660 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type genotype' | genotype | RNA-seq of coding RNA of Arabidopsis Phytochrome (phy)-Interacting bHLH Factor (PIF) mutants against wild-type controls to study target genes of PIF |
-2 | | AT1G29660 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2 | | AT1G29660 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-2 | | AT1G29660 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
2 | | AT1G29660 | 'continuous blue light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
2 | | AT1G29660 | 'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-2 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2 | | AT1G29660 | 'HrpZ 10uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
-2 | | AT1G29660 | 'ga1-3 gai-t6 rga-t2 rgl1-1 rgl2-1' vs 'wild type' in 'Alternaria brassicicola' at '72 hour' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
-2 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-1.9 | | AT1G29660 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.9 | | AT1G29660 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
1.9 | | AT1G29660 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-1.9 | | AT1G29660 | 'clf28 mutant' vs 'wild type' in 'silique' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-1.9 | | AT1G29660 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.9 | | AT1G29660 | 'antimycin A; 50 micromolar; anac017-1' vs 'water; anac017-1' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
1.9 | | AT1G29660 | 'tink/ibr5-6' vs 'wild type' | genotype | Transcription profiling by array of the tinkerbell (tink) mutation of Arabidopsis. |
-1.9 | | AT1G29660 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.9 | | AT1G29660 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.9 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.9 | | AT1G29660 | 'salicylic acid' vs 'Silwet' at time: '4 hours' in ecotype: 'Col-0' | growth condition, time, ecotype | Transcription profiling by array of seven ecotypes of Arabidopsis thaliana after time course treatment with salicylic acid. |
-1.9 | | AT1G29660 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wild type' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
1.8 | | AT1G29660 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.8 | | AT1G29660 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-1.8 | | AT1G29660 | '30% inhibition from optimum photosynthesis temperature' vs 'baseline growth temperature' | growth condition | Transcription profiling by array of Arabidopsis after growth at different temperatures |
1.8 | | AT1G29660 | 'continuous far-red light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.8 | | AT1G29660 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
-1.8 | | AT1G29660 | '9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.8 | | AT1G29660 | 'continuous red light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.8 | | AT1G29660 | 'transgenic LeB4::AtHb1' vs 'wild type' in 'control' | genotype, growth condition | Expression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions |
-1.8 | | AT1G29660 | 'dexamethasone; 10 micromolar' vs 'none' in 'LBD18 over-expression' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing LBD16 and LBD18 to investigate downstream genes |
1.8 | | AT1G29660 | '3% glucose' at '4 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
-1.8 | | AT1G29660 | 'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type' | genotype | Transcriptome profiling of LecRKVI.2 over-expressor plants. |
-1.8 | | AT1G29660 | 'nhx5-1/nhx6-1 knock outs' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
-1.8 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-1.8 | | AT1G29660 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'control; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1.8 | | AT1G29660 | 'flg22' vs 'water' at '3 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
-1.8 | | AT1G29660 | 'wounding' at '3 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-1.7 | | AT1G29660 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-1.7 | | AT1G29660 | 'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'Col-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1.7 | | AT1G29660 | 'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.7 | | AT1G29660 | 'ein2-1; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-1.7 | | AT1G29660 | 'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-1.7 | | AT1G29660 | 'excess light; none; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
-1.7 | | AT1G29660 | 'bak1-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.7 | | AT1G29660 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.7 | | AT1G29660 | 'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
-1.7 | | AT1G29660 | 'dexamethasone' vs 'no compound' in 'GVGdvl4' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone |
-1.7 | | AT1G29660 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
1.7 | | AT1G29660 | 'dcl3-1 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-1.7 | | AT1G29660 | 'GST-NPP1 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
-1.7 | | AT1G29660 | 'Phytophthera infestans' vs 'none' at '6 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
-1.7 | | AT1G29660 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.7 | | AT1G29660 | 'rdr2-1 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
1.7 | | AT1G29660 | 'rid4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis temperature-dependent later root fasciation mutants |
-1.7 | | AT1G29660 | '35S::MIF1; dark' vs '35S::MIF1; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-1.7 | | AT1G29660 | 'Pseudomonas syringae DC3000hrpA' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.7 | | AT1G29660 | '3% glucose' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
-1.6 | | AT1G29660 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
-1.6 | | AT1G29660 | 'gul2-1 bri1-5 double mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
1.6 | | AT1G29660 | 'sodium sulfide; des1' vs 'water; des1' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
1.6 | | AT1G29660 | '3 percent glucose' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
1.6 | | AT1G29660 | 'hypoxia' vs 'normoxia' in 'HRE1-RNAi20' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
-1.6 | | AT1G29660 | 'nhx5-2/nhx6-2 knock outs' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
-1.6 | | AT1G29660 | 'Pseudomonas syringae pv. tomato expressing HopZ1a' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
1.6 | | AT1G29660 | '3% glucose' at '2 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
-1.6 | | AT1G29660 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
1.6 | | AT1G29660 | 'fus3-3 mutant' vs 'wild type' in '12 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.6 | | AT1G29660 | '4 degree celsius' vs '20 degree celsius' in 'Tenela' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.6 | | AT1G29660 | 'lug-3 mutant' vs 'wild type' in 'flower' | genotype, organism part | Transcription profiling by array of Arabidopsis lug-3 mutant plants |
-1.6 | | AT1G29660 | 'SCO3-1 point mutation' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for sco3 |
-1.6 | | AT1G29660 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'whole root' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
1.6 | | AT1G29660 | 'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-1.6 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.5 | | AT1G29660 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1.5 | | AT1G29660 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
-1.5 | | AT1G29660 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1.5 | | AT1G29660 | '4 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-1.5 | | AT1G29660 | 'gul2-1 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
-1.5 | | AT1G29660 | 'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype' | genotype | Functional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis |
-1.5 | | AT1G29660 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-1.5 | | AT1G29660 | 'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.5 | | AT1G29660 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
1.5 | | AT1G29660 | 'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1.5 | | AT1G29660 | 'antimycin A; 50 micromolar; wild type' vs 'water; wild type' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
1.5 | | AT1G29660 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-1.5 | | AT1G29660 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.5 | | AT1G29660 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.5 | | AT1G29660 | 'hmr-22 weak allele mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light |
1.5 | | AT1G29660 | 'pkr2 pkl' vs 'wild type' | genotype | Transcription profiling of Arabidopsis pickle mutants |
-1.5 | | AT1G29660 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-1.5 | | AT1G29660 | 'dde2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1.5 | | AT1G29660 | 'er-2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis developing inflorescence tips from er-2 mutant and epfl4, epfl6 double mutant |
1.5 | | AT1G29660 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.5 | | AT1G29660 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
1.5 | | AT1G29660 | '100 micromolar ATP' vs 'control' in 'wild type' | genotype, growth condition | ATP effect on Arabidopsis roots |
-1.5 | | AT1G29660 | 'Flg-22 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
-1.5 | | AT1G29660 | '35S::MIF1; dark' vs 'empty pRR2222 vector; dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-1.5 | | AT1G29660 | 'oligogalacturonide' vs 'water' at '1 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
1.5 | | AT1G29660 | 'ga1-3 mutant' vs 'wild type' in 'flower bud' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
-1.5 | | AT1G29660 | '2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
-1.5 | | AT1G29660 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.4 | | AT1G29660 | 'estradiol; 10 micromolar' vs 'none' | compound | Direct role of MUTE in cell state switch and symmetric cell division to create stomata |
-1.4 | | AT1G29660 | 'warm/hot temperature regimen' vs 'none' in 'wild type genotype' | environmental stress, genotype | Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
-1.4 | | AT1G29660 | 'Spt4 knock down' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2 |
-1.4 | | AT1G29660 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
-1.4 | | AT1G29660 | 'anac017 T-DNA mutant' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.4 | | AT1G29660 | 'met1 mutant' vs 'wild type' at '0 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
1.4 | | AT1G29660 | 'hypoxia' vs 'normoxia' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
1.4 | | AT1G29660 | '5 min UV-A/B light pulse + 4 h darkness' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.4 | | AT1G29660 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.4 | | AT1G29660 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-1.4 | | AT1G29660 | 'syringolin; 20 micromolar' vs 'none' in 'powdery mildew infected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-1.4 | | AT1G29660 | '35S::ERF104; flg22' vs '35S::ERF104; none' | compound, genotype | Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 |
-1.4 | | AT1G29660 | 'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.4 | | AT1G29660 | 'pop2-1 mutant' vs 'wild type' | genotype | Gene expression data from Arabidopsis wild-type and pop2-1 mutant flowers |
-1.4 | | AT1G29660 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.4 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-1.3 | | AT1G29660 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.3 | | AT1G29660 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.3 | | AT1G29660 | 'wild type; Botrytis cinerea 2100' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
-1.3 | | AT1G29660 | 'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
-1.3 | | AT1G29660 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-1.3 | | AT1G29660 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.3 | | AT1G29660 | 'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'Bl-1' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1.3 | | AT1G29660 | 'lec1-1 mutant' vs 'wild type' in '8 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.3 | | AT1G29660 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1.3 | | AT1G29660 | 'low light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1.3 | | AT1G29660 | '3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
-1.3 | | AT1G29660 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.3 | | AT1G29660 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-1.3 | | AT1G29660 | 'pmr5 pmr6 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
-1.3 | | AT1G29660 | 'bri1-5/bri1-1D' vs 'wild type' | genotype | Genome-wide expression analysis of bri1-5 and its suppressors brs1-1D, bak1-1D, bri1-1D |
1.3 | | AT1G29660 | 'ASL9 overexpressor' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing ASL9 |
-1.3 | | AT1G29660 | 'indole-3-acetic acid;3 hour' vs 'indole-3-acetic acid; 1 hour' in 'Bur-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.3 | | AT1G29660 | 'hyl1 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
1.3 | | AT1G29660 | 'epfl4, epfl6 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis developing inflorescence tips from er-2 mutant and epfl4, epfl6 double mutant |
1.3 | | AT1G29660 | 'atbzip16; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'atbzip16; dark' | genotype, light | Transcription profiling by array of Arabidopsis early seedling development |
-1.3 | | AT1G29660 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development |
-1.3 | | AT1G29660 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.3 | | AT1G29660 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.3 | | AT1G29660 | 'drought stress' vs 'none' in 'control' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.3 | | AT1G29660 | 'drought' vs 'control' in 'camta1-3 mutant; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.3 | | AT1G29660 | 'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark' | genotype, light | Transcription profiling by array of Arabidopsis early seedling development |
1.3 | | AT1G29660 | 'PAP, 100 micromolar; lithium chloride, 100 millimolar; ATP, 1 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
-1.3 | | AT1G29660 | '0.125 mM gold for 24 hours' vs 'untreated control' | growth condition | Transcription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold |
-1.2 | | AT1G29660 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.2 | | AT1G29660 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.2 | | AT1G29660 | 'ethanol' at '1 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
-1.2 | | AT1G29660 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-1.2 | | AT1G29660 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-1.2 | | AT1G29660 | 'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
-1.2 | | AT1G29660 | 'bri1-116 null mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1.2 | | AT1G29660 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.2 | | AT1G29660 | 'bri1-116 null mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
1.2 | | AT1G29660 | 'lec2-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.2 | | AT1G29660 | 'anac017 T-DNA mutant' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.2 | | AT1G29660 | '5 min UV-A light pulse + 4 h darkness' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.2 | | AT1G29660 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.2 | | AT1G29660 | 'light pulse in the middle of the day' vs 'day time control' | growth condition | RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock |
-1.2 | | AT1G29660 | 'transgenic LeB4::AtHb1' vs 'wild type' in 'hypoxia' | genotype, growth condition | Expression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions |
-1.2 | | AT1G29660 | '8 hour (light)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
-1.2 | | AT1G29660 | 'Pseudomonas syringae pv. tomato expressing HopZ1a:C216A' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
-1.2 | | AT1G29660 | '4 days salt treatment' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves under the condition of salt-induced senescence |
1.2 | | AT1G29660 | 'dcl2-1 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-1.2 | | AT1G29660 | 'tor mutant' vs 'wild type' in 'none; 0 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
1.2 | | AT1G29660 | 'vte1 mutant' vs 'wild type' in '3 day' | age, genotype | Transcription profiling by array of Arabidopsis mutant for vte1 or vte2 |
-1.1 | | AT1G29660 | 'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA' | fraction, genotype, protocol | Direct RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana |
-1.1 | | AT1G29660 | 'ref4-3; cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.1 | | AT1G29660 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.1 | | AT1G29660 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.1 | | AT1G29660 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.1 | | AT1G29660 | 'TaRZ1 overexpressing line' vs 'wild type' | genotype | Gene expression profile in wheat TaRZ1-expressing Arabidopsis plant |
-1.1 | | AT1G29660 | 'FRI wild type, flc mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
-1.1 | | AT1G29660 | 'anac017 loss of function mutant' vs 'wild type genotype' | genotype | Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq] |
-1.1 | | AT1G29660 | 'dehydration stress' vs 'control' in 'srk2dei triple mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.1 | | AT1G29660 | 'auxin and brassinazole' vs 'auxin' | compound | Transcription profiling by array of Arabidopsis after treatment with auxin and brassinazole or auxin only |
-1.1 | | AT1G29660 | 'bri1-5 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
1.1 | | AT1G29660 | '24h' vs '12h' | organism part, time | Transcription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light |
1.1 | | AT1G29660 | '24h' vs '12h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
1.1 | | AT1G29660 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.1 | | AT1G29660 | 'safener' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2 or tga2, tga3, tga5 and tga6 after treatment with mefenpyr and isoxadifen |
1.1 | | AT1G29660 | 'ambient carbon dioxide 24h' vs 'ambient carbon dioxide 12h' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels |
1.1 | | AT1G29660 | 'dexamethasone; CHLD reduction' vs 'dexamethasone; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
-1.1 | | AT1G29660 | 'siz1-3' vs 'wild type' in 'drought' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
-1.1 | | AT1G29660 | 'low light; DBMIB; 24 micromolar; 0.5 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.1 | | AT1G29660 | 'RNAi-MBS2/mbs1-1 knockdown' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.1 | | AT1G29660 | '35S:MBS1 overexpression' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.1 | | AT1G29660 | '35S::C2' vs 'control' in 'methyl jasmonate' | compound, genotype | Transcription profiling by array of Arabidopsis expressing genimivirus C2 under the control of the 35S promoter after treatment with methyl jasmonate |
-1.1 | | AT1G29660 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.1 | | AT1G29660 | '12 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
-1.1 | | AT1G29660 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.1 | | AT1G29660 | 'dcl1-7 mutant' vs 'wild type' in 'Ler' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-1.1 | | AT1G29660 | 'pft1 mutant' vs 'wild type' in 'control' at '0 hour' | genotype, growth condition, time | pft1 glucose responses |
1.1 | | AT1G29660 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-1.1 | | AT1G29660 | '2 hour; excess light' vs '0 hour; low light' in 'wild type' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
-1.1 | | AT1G29660 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
1.1 | | AT1G29660 | 'trichostatin A 2.5 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-1.1 | | AT1G29660 | 'pft1 mutant' vs 'wild type' in 'glucose' at '6 hour' | genotype, growth condition, time | pft1 glucose responses |
-1.1 | | AT1G29660 | 'dehydration stress' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.1 | | AT1G29660 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.1 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1 | | AT1G29660 | 'warm/hot temperature regimen' vs 'none' in '35S:HSFA1b-RFP' | environmental stress, genotype | Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
1 | | AT1G29660 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1 | | AT1G29660 | 'hid1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis hid1 mutant seedlings grown under continuous red light |
-1 | | AT1G29660 | 'clf28 mutant' vs 'wild type' in 'shoot' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-1 | | AT1G29660 | 'fri flc double mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
1 | | AT1G29660 | 'ethanol' at '2 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1 | | AT1G29660 | 'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
-1 | | AT1G29660 | 'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1 | | AT1G29660 | 'T-DNA knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1 | | AT1G29660 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
1 | | AT1G29660 | '1 min red light pulse + 4 h darkness' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1 | | AT1G29660 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-1 | | AT1G29660 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
-1 | | AT1G29660 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
1 | | AT1G29660 | 'iaa32; iaa34' vs 'wild type genotype' | genotype | TMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana |
-1 | | AT1G29660 | 'dexamethasone; 5 micromolar' vs 'none' in 'inducible 35S:LOB-GR line' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
-1 | | AT1G29660 | 'AT4G01050 knock out' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis TROL knock-out plants |
1 | | AT1G29660 | 'ethanol; 2.5 percent' vs 'control' in 'ethanol-inducible TOC1 transgenic line; 12 days in LD + 1 day in constant light (LL)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1 | | AT1G29660 | 'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1 | | AT1G29660 | 'mbs1-1 mutant' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
-1 | | AT1G29660 | 'pmr5 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
-1 | | AT1G29660 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-1 | | AT1G29660 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '120 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1 | | AT1G29660 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1 | | AT1G29660 | 'MtNPF1.7 expression' vs 'wild type genotype' in '0.1 mM nitrate' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1 | | AT1G29660 | 'wnk8-1 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
1 | | AT1G29660 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1 | | AT1G29660 | 'sulfometuron methyl' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with sulfometuron methyl herbicide |
1 | | AT1G29660 | '0.1% epibrassinolide' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
-1 | | AT1G29660 | 'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1 | | AT1G29660 | 'tga2;tga5;tga6 mutant; 12-oxo-phytodienoic acid' vs 'Col-0; 12-oxo-phytodienoic acid' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid |
1 | | AT1G29660 | 'dcl1-15 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos |
1 | | AT1G29660 | 'coi1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
1 | | AT1G29660 | 'returned to basal medium 1 day after osmotic stress' vs 'control' in 'root' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
-1 | | AT1G29660 | 'pnp1-1' vs 'wild type' in 'nutrient medium minus phosphate' at '3 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
1 | | AT1G29660 | 'AGL15 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
-1 | | AT1G29660 | '2-hexenal' vs 'mock' at '1 hour' | compound, time | Transcription profiling by array of Arabidopsis rosette leaves in response to aerial E-2-hexenal, one of the green leaf volatiles |
-1 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1 | | AT1G29660 | 'methyl jasmonate' vs 'mock' in 'jaz7-1D' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1 | | AT1G29660 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1 | | AT1G29660 | 'polysomal RNA; turnip mosaic virus inoculated' vs 'polysomal RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |