-4.9 | | ALT1 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-4.6 | | ALT1 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-4.5 | | ALT1 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
4.2 | | ALT1 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-4.1 | | ALT1 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
3.3 | | ALT1 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type genotype' | genotype | RNA-seq of coding RNA of Arabidopsis Phytochrome (phy)-Interacting bHLH Factor (PIF) mutants against wild-type controls to study target genes of PIF |
-3.2 | | ALT1 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
3.2 | | ALT1 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-3 | | ALT1 | 'abscisic acid; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-2.8 | | ALT1 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
2.7 | | ALT1 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
2.7 | | ALT1 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
2.7 | | ALT1 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
2.6 | | ALT1 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-2.6 | | ALT1 | 'paclobutrazol; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-2.6 | | ALT1 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.5 | | ALT1 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
2.4 | | ALT1 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.3 | | ALT1 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-2.3 | | ALT1 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
-2.3 | | ALT1 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.1 | | ALT1 | 'myb21-5, myb24-5 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-2.1 | | ALT1 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
2 | | ALT1 | 'sucrose; 1 percent' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
2 | | ALT1 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
1.9 | | ALT1 | 'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
-1.9 | | ALT1 | 'cycloheximide, dexamethasone' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
1.8 | | ALT1 | 'FRI wild type, flc mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
-1.8 | | ALT1 | 'cycloheximide' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
-1.8 | | ALT1 | 'gtl1-1 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis trichome from 5th and 6th rosette leaves of gtl1-1 mutant and wild type controls |
-1.8 | | ALT1 | 'wild type; Botrytis cinerea 2100' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
1.8 | | ALT1 | 'strigolactone GR24; 10 micromolar' vs 'DMSO' in 'hy1-102 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis hy1 mutants treated with the germination stimulant GR24 |
1.7 | | ALT1 | 'TaRZ1 overexpressing line' vs 'wild type' | genotype | Gene expression profile in wheat TaRZ1-expressing Arabidopsis plant |
-1.7 | | ALT1 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-1.7 | | ALT1 | 'Cax1/Cax3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cax1/cax3 double mutants |
1.6 | | ALT1 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
1.6 | | ALT1 | 'synthetic strigolactone GR24 10 micromolar' vs 'DMSO' | compound | Transcription profiling by array of Arabidopsis thaliana seedlings treated with CTL-VI or GR24 |
1.6 | | ALT1 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
1.6 | | ALT1 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.6 | | ALT1 | 'auxin resistant pIAA26::IAA26-P108H-GFP transgenic' vs 'control' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pIAA26::IAA26-P108H-GFP transgenic plants |
-1.6 | | ALT1 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.5 | | ALT1 | 'fri flc double mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
1.5 | | ALT1 | 'continuous blue light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
1.5 | | ALT1 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1.5 | | ALT1 | 'bli-1 -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
1.5 | | ALT1 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.4 | | ALT1 | 'wild type; UV-B light regimen (345 nm); 6 hour; 305nm' vs 'wild type; UV-B light regimen (345 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
1.4 | | ALT1 | 'RNAi knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1.4 | | ALT1 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1.4 | | ALT1 | '35S::LFY-GR' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis expressing LEAFY under the control of the 35S promoter |
-1.4 | | ALT1 | 'gun4-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin |
-1.4 | | ALT1 | '2 hr hypoxia' vs '2 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.4 | | ALT1 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wild type' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
-1.4 | | ALT1 | 'rhd2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for rhd2/ArtbohC |
-1.4 | | ALT1 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.3 | | ALT1 | 'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' | genotype, light, time | Expression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings |
1.3 | | ALT1 | 'continuous far-red light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.3 | | ALT1 | 'ga1-3 mutant' vs 'wild type' in 'flower bud' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
-1.3 | | ALT1 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
1.3 | | ALT1 | 'seu-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
1.3 | | ALT1 | 'seu-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
1.3 | | ALT1 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.3 | | ALT1 | 'dexamethasone; 10 micromolar' vs 'DMSO' in '35S::WRKY23-GR' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
-1.3 | | ALT1 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.2 | | ALT1 | 'lec1-1 mutant' vs 'wild type' in '8 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.2 | | ALT1 | 'bri1-5 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
-1.2 | | ALT1 | '35 micromolar; N-lauroylethanolamine (NAE(12:0))' vs '0.05 percent; DMSO' | compound | Transcription profiling of Arabidopsis seedlings treated with NAE(12:0) |
1.2 | | ALT1 | 'hen1 mutant' vs 'wild type' in 'Ler' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
-1.2 | | ALT1 | '9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.2 | | ALT1 | 'fip37-4 LEC1:FIP37' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings |
1.2 | | ALT1 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.2 | | ALT1 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-1.2 | | ALT1 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
1.2 | | ALT1 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
1.2 | | ALT1 | 'amp1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild type and AMP1 mutant seeds |
1.1 | | ALT1 | 'continuous white light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
1.1 | | ALT1 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '24 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-1.1 | | ALT1 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
1.1 | | ALT1 | 'dexamethasone' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
1.1 | | ALT1 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
-1.1 | | ALT1 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1 | | ALT1 | 'Spt4 knock down' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2 |
1 | | ALT1 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
1 | | ALT1 | 'pkl mutant; no compound' vs 'wild type; no compound' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole |
1 | | ALT1 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
-1 | | ALT1 | 'lec1-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1 | | ALT1 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
1 | | ALT1 | 'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1 | | ALT1 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1 | | ALT1 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1 | | ALT1 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
1 | | ALT1 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-1 | | ALT1 | 'frb1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for frb1 |
-1 | | ALT1 | 'Ler x C24 F1 hybrid' vs 'C24' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis F1 hybrids from crosses between C24, Landsberg erecta (Ler) and Columbia (Col) |
-1 | | ALT1 | 'bli-1 -/-; ire1b -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |