-5.4 | | AT1G70700 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
5.2 | | AT1G70700 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
5 | | AT1G70700 | '7 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
4.9 | | AT1G70700 | '10 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-4.9 | | AT1G70700 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
4.8 | | AT1G70700 | '5 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
4.8 | | AT1G70700 | 'wounding' at '1 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-4.7 | | AT1G70700 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
4.6 | | AT1G70700 | 'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive' | genotype, phenotype | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
4.6 | | AT1G70700 | "leaf 8 wounded" vs "unwounded" | growth condition | Transcription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls |
4.5 | | AT1G70700 | 'cycloheximide' vs 'control' | treatment | Transcription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts |
4.5 | | AT1G70700 | 'dexamethasone and cycloheximide' vs 'control' | treatment | Transcription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts |
-4.5 | | AT1G70700 | 'coi1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
4.4 | | AT1G70700 | '14 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
4.4 | | AT1G70700 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
4.3 | | AT1G70700 | 'wounding; 1 hour' vs 'none; 0 hour' in 'DMSO' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
4.3 | | AT1G70700 | 'methyl jasmonate 0.1 micromolar' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for myc2 after treatment with methyl jasmonate |
-4.2 | | AT1G70700 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
4.1 | | AT1G70700 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
3.9 | | AT1G70700 | 'jasmonate' at '2 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
3.8 | | AT1G70700 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
3.8 | | AT1G70700 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
3.8 | | AT1G70700 | 'methyl jasmonate 0.1 micromolar' vs 'none' in 'jin1-9' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for myc2 after treatment with methyl jasmonate |
3.7 | | AT1G70700 | 'wounding; 3 hour' vs 'none; 0 hour' in 'DMSO' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
3.7 | | AT1G70700 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
3.7 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
3.7 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '8 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
-3.6 | | AT1G70700 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-3.6 | | AT1G70700 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; Alternaria brassicicola' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3.6 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '24 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
3.5 | | AT1G70700 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
3.5 | | AT1G70700 | 'wounding' at '3 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
3.4 | | AT1G70700 | 'pBeaconRFP_IAA19mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-3.4 | | AT1G70700 | '2 day; naphthaleneacetic acid' vs '0 day; no treatment' in 'stem tissue' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid |
-3.3 | | AT1G70700 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-3.2 | | AT1G70700 | '4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
3.1 | | AT1G70700 | 'jasmonic acid; low red/far-red ratio' vs 'mock; low red/far-red ratio' | compound, treatment | Expression data from low Red:Far-Red ratio and Jasmonic Acid crosstalk in Arabidopsis |
3.1 | | AT1G70700 | 'jasmonate' at '8 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
3.1 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '8 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
3 | | AT1G70700 | 'tcx2; WOX5:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-3 | | AT1G70700 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
3 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Col-0' at '24 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
2.9 | | AT1G70700 | 'clf28 mutant' vs 'wild type' in 'root' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
2.9 | | AT1G70700 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
2.9 | | AT1G70700 | 'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
2.9 | | AT1G70700 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
2.9 | | AT1G70700 | 'dehydration stress' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
2.9 | | AT1G70700 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.9 | | AT1G70700 | 'ozone 500 parts per billion' vs 'control' | growth condition | Functional Genomics of Ozone Stress in Arabidopsis. |
2.9 | | AT1G70700 | 'ozone 500 parts per billion' vs 'control' | growth condition | Arabidopsis thaliana response to ozone |
2.9 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '24 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
2.8 | | AT1G70700 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-2.8 | | AT1G70700 | '3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
2.8 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
2.8 | | AT1G70700 | "40 microampere of electric current for 10 second" vs "no electric current injection" | growth condition | Transcription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls |
2.7 | | AT1G70700 | 'wounding; 6 hour' vs 'none; 0 hour' in 'DMSO' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-2.7 | | AT1G70700 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.7 | | AT1G70700 | '3 percent glucose' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
2.7 | | AT1G70700 | 'from low light to high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-2.7 | | AT1G70700 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'epidermis' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
2.7 | | AT1G70700 | 'jasmonic acid; high red/far-red ratio' vs 'mock; high red/far-red ratio' | compound, treatment | Expression data from low Red:Far-Red ratio and Jasmonic Acid crosstalk in Arabidopsis |
2.7 | | AT1G70700 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
-2.6 | | AT1G70700 | '3% glucose; 0.1% epibrassinolide' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
2.6 | | AT1G70700 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.6 | | AT1G70700 | 'constant darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
-2.6 | | AT1G70700 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.5 | | AT1G70700 | 'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
-2.5 | | AT1G70700 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-2.5 | | AT1G70700 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'stele' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
2.5 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
2.5 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2.4 | | AT1G70700 | 'wounding' at '6 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-2.4 | | AT1G70700 | 'Trichoplusia ni feeding' vs 'control' in 'Laccaria bicolor' | environmental stress, infect | Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots |
-2.4 | | AT1G70700 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.4 | | AT1G70700 | 'high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-2.4 | | AT1G70700 | 'coi1-2 mutant' vs 'wild type genotype' in 'none' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.3 | | AT1G70700 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
2.3 | | AT1G70700 | '1 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-2.3 | | AT1G70700 | 'ref4-3; cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
-2.3 | | AT1G70700 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2.3 | | AT1G70700 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.3 | | AT1G70700 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.3 | | AT1G70700 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
2.3 | | AT1G70700 | 'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-2.3 | | AT1G70700 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.2 | | AT1G70700 | 'clf28 mutant' vs 'wild type' in 'shoot' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
2.2 | | AT1G70700 | 'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'none; ; atpao5-3 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride |
-2.2 | | AT1G70700 | 'sucrose; 1 percent' vs 'none' in 'RBRcs mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
2.2 | | AT1G70700 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'root' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
2.2 | | AT1G70700 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-2.2 | | AT1G70700 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.2 | | AT1G70700 | 'Zat10 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing Zat10 under the control of the 35S promoter |
2.2 | | AT1G70700 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-2.1 | | AT1G70700 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.1 | | AT1G70700 | '2 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
2.1 | | AT1G70700 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
2.1 | | AT1G70700 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-2.1 | | AT1G70700 | 'coi1-2 mutant' vs 'wild type genotype' in 'none' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.1 | | AT1G70700 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.1 | | AT1G70700 | 'antimycin A; 50 micromolar' vs 'water' in 'rao1-1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
2.1 | | AT1G70700 | 'jasmonate' at '22 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
2.1 | | AT1G70700 | 'antimycin A; 50 micromolar' vs 'water' in 'rao1-2 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
-2.1 | | AT1G70700 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of injured Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
2.1 | | AT1G70700 | 'Columbia-0; alx8' vs 'Columbia-0; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
-2.1 | | AT1G70700 | 'trichostatin A 2.5 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-2.1 | | AT1G70700 | '4 degree celsius' vs '20 degree celsius' in 'Rschew' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2 | | AT1G70700 | 'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
2 | | AT1G70700 | '35S:GFP-FHY1; fhy1-1 transgenic line' vs 'fhy1-1 mutant' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis 35S:GFP-FHY1; fhy1-1 transgenic line compared to fhy1-1 mutant |
-2 | | AT1G70700 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2 | | AT1G70700 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2 | | AT1G70700 | 'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
2 | | AT1G70700 | 'trans-zeatin; 20 micromolar' vs 'control' in 'wild type' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
2 | | AT1G70700 | 't-zeatin; Col-0' vs 'DMSO; Col-0' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
-2 | | AT1G70700 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-2 | | AT1G70700 | 'Trichoplusia ni feeding' vs 'control' in 'none' | environmental stress, infect | Transcription profiling of Arabidopsis thaliana leaves as reaction to caterpillar (Trichoplusia ni) feeding and fungi (Laccaria bicolor) infection of the roots |
2 | | AT1G70700 | 'homozygous AtCesA4' vs 'heterozygous AtCesA4' | genotype | Transcription profiling by array of Arabidopsis cellulose synthase mutants |
-2 | | AT1G70700 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development |
-2 | | AT1G70700 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
2 | | AT1G70700 | 'sid2-1 mutant; Pseudomonas syringae pv. maculicola str. ES4326' vs 'sid2-1 mutant; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
2 | | AT1G70700 | 'jasmonate' at '0.5 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
1.9 | | AT1G70700 | 'NSRa/NSRb' vs 'wild type' | genotype | Alternative RNA processing events in a double NSR mutant Arabidopsis |
-1.9 | | AT1G70700 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'columella' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
-1.9 | | AT1G70700 | 'fus3-3 mutant' vs 'wild type' in '12 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.9 | | AT1G70700 | 'ga1-3, brm-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
1.9 | | AT1G70700 | 'C24; fry1-1' vs 'C24; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
1.8 | | AT1G70700 | 'Phytophthora parasitica' vs 'none' in 'wild type genotype' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
1.8 | | AT1G70700 | 'Phytophthora parasitica' vs 'none' in 'gsnor1' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
1.8 | | AT1G70700 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
1.8 | | AT1G70700 | 'wounding' at '12 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
1.8 | | AT1G70700 | 'trans-zeatin; 20 micromolar' vs 'control' in 'arr10 arr12 double mutant' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
1.8 | | AT1G70700 | 't-zeatin; SALK_098604, SALK_054752' vs 'DMSO; SALK_098604, SALK_054752' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
1.8 | | AT1G70700 | 'double mutant at3g03940/at518190 knockdown' vs 'wild type' | genotype | Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression] |
-1.8 | | AT1G70700 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1.8 | | AT1G70700 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.8 | | AT1G70700 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
1.8 | | AT1G70700 | 'constant darkness' vs 'constant white light' in 'petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
1.8 | | AT1G70700 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
1.8 | | AT1G70700 | 'antimycin A; 50 micromolar' vs 'water' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1.8 | | AT1G70700 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.7 | | AT1G70700 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.7 | | AT1G70700 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.7 | | AT1G70700 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
1.7 | | AT1G70700 | '4 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-1.7 | | AT1G70700 | 'phyA-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis phyA-1 mutants |
-1.7 | | AT1G70700 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.7 | | AT1G70700 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
1.7 | | AT1G70700 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1.7 | | AT1G70700 | 'CAP-D3 mutant line SALK_094776' vs 'wild type genotype' | genotype | Influence of CAP-D3 in Arabidopsis thaliana transcription |
1.7 | | AT1G70700 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
1.7 | | AT1G70700 | 'light pulse in the middle of the day' vs 'day time control' | growth condition | RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock |
-1.7 | | AT1G70700 | 'tor mutant' vs 'wild type' in 'none; 0 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
-1.7 | | AT1G70700 | 'ADEK1 calpain overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing DEK1 calpain |
-1.6 | | AT1G70700 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.6 | | AT1G70700 | 'smg7-1 pad4-1 double mutant' vs 'pad4-1 mutant' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis smg7 pad4 double mutant |
-1.6 | | AT1G70700 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.6 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
1.6 | | AT1G70700 | 'dehydration stress' vs 'control' in 'srk2dei triple mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.6 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.4 mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
1.6 | | AT1G70700 | 'T-DNA knock out line 1' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1.6 | | AT1G70700 | 'ga1-3 mutant' vs 'wild type' in 'flower bud' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
1.6 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.6 | | AT1G70700 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.6 | | AT1G70700 | 'Plasmodiophora brassicae' vs 'none' at '10 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
1.6 | | AT1G70700 | 'methyl jasmonate' vs 'mock' in 'wild type' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1.6 | | AT1G70700 | '35S::MIF1; dark' vs '35S::MIF1; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
1.6 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'wild type' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
1.6 | | AT1G70700 | 'drought stress' vs 'none' in 'control' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.6 | | AT1G70700 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
1.6 | | AT1G70700 | 'At1G60900 homozygous knockout' vs 'wild type genotype' | genotype | RNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col). |
1.6 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.5 | | JAZ9 | 'dja6; dja5 double mutant' vs 'wild type genotype' | genotype | RNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana |
-1.5 | | AT1G70700 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.5 | | AT1G70700 | 'Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
1.5 | | AT1G70700 | 'wounding; 1 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.5 | | AT1G70700 | '60 minutes after cordycepin treatment' vs 'immediately after cordycepin treatment' in 'wild type genotype' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
1.5 | | AT1G70700 | 'RNAi knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1.5 | | AT1G70700 | 'wounding; 3 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.5 | | AT1G70700 | 'imidazolinone' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with imidazolinone |
-1.5 | | AT1G70700 | '50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-1.5 | | AT1G70700 | '3% glucose' at '2 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
-1.5 | | AT1G70700 | 'camta1/2/3 mutant; grown at 22 C and treated at 4 C for 24 hours' vs 'wild type; grown at 22 C and treated at 4 C for 24 hours' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1.5 | | AT1G70700 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.5 | | AT1G70700 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.5 | | AT1G70700 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.5 | | AT1G70700 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.5 | | AT1G70700 | '37 degrees celsius' vs '20 degrees celsius' | compound, temperature | Transcription profiling by array of Arabidopsis after heat shock or treatment with tunicamycin or L-azetidine-2-carboxylic acid |
-1.5 | | AT1G70700 | 'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1.5 | | AT1G70700 | 'systemically damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
-1.5 | | AT1G70700 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'wild type' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
-1.5 | | AT1G70700 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
1.5 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'erp2D mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.5 | | AT1G70700 | 'ADEK1 calpian null' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing DEK1 calpain |
-1.5 | | AT1G70700 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.4 | | AT1G70700 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.4 | | AT1G70700 | 'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.4 | | AT1G70700 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.4 | | AT1G70700 | '50 micromolar abscisic acid' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.4 | | AT1G70700 | 'water; des1' vs 'water; wild type' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
1.4 | | AT1G70700 | 'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
1.4 | | AT1G70700 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
1.4 | | AT1G70700 | 'CAP-D3 mutant line SAIL_826_B06' vs 'wild type genotype' | genotype | Influence of CAP-D3 in Arabidopsis thaliana transcription |
-1.4 | | AT1G70700 | 'abi3-6 mutant' vs 'wild type' in '12 day' | age, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2] |
-1.4 | | AT1G70700 | 'met1 mutant' vs 'wild type' at '6 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-1.4 | | AT1G70700 | '3% glucose' at '4 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid |
1.4 | | AT1G70700 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
-1.4 | | AT1G70700 | 'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1.4 | | AT1G70700 | 'methyl jasmonate' vs 'mock' in 'jaz7-1D' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1.4 | | AT1G70700 | 'pdx1.3 knockout' vs 'wild type' in 'leaf' | genotype, organism part | Expression data from WT Col-0 and the pdx1.3 ko mutant of Arabidopsis |
1.4 | | AT1G70700 | 'actin2-5' vs 'wild type' | genotype | Actin Cytoskeleton Integrates Auxin and Brassinosteroid Signaling in Plants. |
-1.4 | | AT1G70700 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
1.4 | | AT1G70700 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.4 | | AT1G70700 | 'AP1::AtIPT4 transgenic plant' vs 'wild type' | genotype | Transcription profiling by array of young inflorescences of AP1∷AtIPT4 Arabidopsis thaliana transgenic plants to identify the candidate genes responsive to cytokinin |
1.4 | | AT1G70700 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'leaf' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
-1.4 | | AT1G70700 | 'RNAi-MBS2/mbs1-1 knockdown' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.4 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'erp140 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.4 | | AT1G70700 | 'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
-1.4 | | AT1G70700 | 'mbs1-1 mutant' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.4 | | AT1G70700 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.4 | | AT1G70700 | 'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1.4 | | AT1G70700 | 'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1.3 | | AT1G70700 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.3 | | AT1G70700 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
1.3 | | AT1G70700 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-1.3 | | AT1G70700 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.3 | | AT1G70700 | 'TaRZ1 overexpressing line' vs 'wild type' | genotype | Gene expression profile in wheat TaRZ1-expressing Arabidopsis plant |
-1.3 | | AT1G70700 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
-1.3 | | AT1G70700 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-1.3 | | AT1G70700 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
1.3 | | AT1G70700 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
1.3 | | AT1G70700 | 'pBeaconRFP_IAA7mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
1.3 | | AT1G70700 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
-1.3 | | AT1G70700 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
1.3 | | AT1G70700 | 'antimycin A; 50 micromolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
1.3 | | AT1G70700 | 'tga2;tga5;tga6 mutant; phytoprostane' vs 'Col-0; phytoprostane' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid |
-1.3 | | AT1G70700 | '4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.3 | | AT1G70700 | '35S:MBS1 overexpression' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.3 | | AT1G70700 | 'Pseudomonas syringae DC3000' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.3 | | AT1G70700 | '12-oxophytodienoic acid' at '22 hour' vs 'none' at '0 hour' in 'opr3 mutant' | compound, genotype, time | Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid |
-1.3 | | AT1G70700 | 'wild type; 16 degree celsius' vs 'wild type; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
-1.3 | | AT1G70700 | 'Plasmodiophora brassicae' vs 'none' at '23 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
-1.3 | | AT1G70700 | 'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
-1.3 | | AT1G70700 | 'control; abi1td' at '0 hour' vs 'control; wild type' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-1.2 | | AT1G70700 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.2 | | AT1G70700 | 'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar' | stimulus | Ethylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway. |
-1.2 | | AT1G70700 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1.2 | | AT1G70700 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.2 | | AT1G70700 | 'Sphingomonas melonis Fr1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
-1.2 | | AT1G70700 | 'myc234' vs 'wild type genotype' in 'mechanical stimulus - water from spray bottle' at '25 minute' | genotype, stimulus, time | RNAseq analysis of early touch responses in myc234 mutants in Arabidopsis |
1.2 | | AT1G70700 | '1 hour of blue light exposure' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis wild type plants during the shift from dark to blue light |
-1.2 | | AT1G70700 | 'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day' | age, time, treatment | Transcription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA |
1.2 | | AT1G70700 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
1.2 | | AT1G70700 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.2 | | AT1G70700 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
1.2 | | AT1G70700 | 'tmk1-1' vs 'wild type genotype' | genotype | TMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana |
-1.2 | | AT1G70700 | 'iron; 100 micromolar' vs 'none' in 'bhlh100/101 double mutant; root' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
-1.2 | | AT1G70700 | 'srk2dei triple mutant' vs 'wild type' in '50 micromolar abscisic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.2 | | AT1G70700 | 'chitin' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
1.2 | | AT1G70700 | 'OGs; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.2 | | AT1G70700 | 'dexamethasone' vs 'no compound' in 'GVGdvl4' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone |
1.2 | | AT1G70700 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.2 | | AT1G70700 | 'Heterodera schachtii' vs 'none' | infect | Transcription profiling by array of Arabidopsis roots infected with the cyst nematode H. schachtii |
-1.2 | | AT1G70700 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
-1.2 | | AT1G70700 | 'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1.2 | | AT1G70700 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.2 | | AT1G70700 | 'catalase2 mutant' vs 'wild type' in 'transferred to air for 2 days in long day length regime' | genotype, growth condition | Transcription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod |
1.2 | | AT1G70700 | 'sodium chloride; 50 millimolar; wild type genotype' vs 'none; ; wild type genotype' | compound, genotype | Transcription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride |
1.2 | | AT1G70700 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.2 | | AT1G70700 | 'brm-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
1.2 | | AT1G70700 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.2 | | AT1G70700 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
1.2 | | AT1G70700 | 'antimycin A; 50 micromolar; wild type' vs 'water; wild type' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
1.2 | | AT1G70700 | 'apl mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls |
1.2 | | AT1G70700 | 'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark' | genotype, light | Transcription profiling by array of Arabidopsis early seedling development |
-1.2 | | AT1G70700 | 'Atwrky12-2' vs 'wild type' | genotype | Gene expression profiling of Arabidopsis Atwrky12 mutants stems |
1.1 | | AT1G70700 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.1 | | AT1G70700 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.1 | | AT1G70700 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
-1.1 | | AT1G70700 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.1 | | AT1G70700 | 'exposed to 10 degree Celsius; wild type; 1 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
1.1 | | AT1G70700 | 'dexamethasone; 15 micromolar' vs 'none' | compound | RNA-seq to investigate Auxin responsive genes in the Arabidopsis stem |
1.1 | | AT1G70700 | 'bzip17 -/- ; bzip28 -/-' vs 'wild type genotype' in 'none' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
1.1 | | AT1G70700 | 'pdx3-4 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
-1.1 | | AT1G70700 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.1 | | AT1G70700 | 'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
1.1 | | AT1G70700 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.1 | | AT1G70700 | 'Col-0; 350 ppb ozone exposure for 2hr' vs 'Col-0; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.1 | | AT1G70700 | 'T-DNA knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1.1 | | AT1G70700 | 'dexamethasone; 5 micromolar' vs 'none' in 'inducible 35S:LOB-GR line' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
1.1 | | AT1G70700 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.1 | | AT1G70700 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.1 | | AT1G70700 | 'ron1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ron1 |
1.1 | | AT1G70700 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.1 | | AT1G70700 | 'L17 phyA' line' vs 'wild type' | genotype | Expression data from 10-days old dark grown Arabidopsis seedlings of wild type (Col-0), sps1 line and L17 line. |
1.1 | | AT1G70700 | 'wounding; 6 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1.1 | | AT1G70700 | 'powdery mildew infected' vs 'uninfected' in 'syringolin; 20 micromolar' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.1 | | AT1G70700 | 'bzip1, bzip53 double knockout' vs 'wild type' in 'sodium chloride; 150 millimolar' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.1 | | AT1G70700 | 'hog1-7 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis polyploidy-associated transcriptional gene silencing (paTGS) mutants ddm1-12 and hog1-7 against wild type controls |
1.1 | | AT1G70700 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
-1.1 | | AT1G70700 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.1 | | AT1G70700 | 'pap1-D/tt4' vs 'wild type' | genotype | Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis. |
1.1 | | AT1G70700 | '0.125 mM gold for 24 hours' vs 'untreated control' | growth condition | Transcription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold |
-1.1 | | AT1G70700 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.1 | | AT1G70700 | 'mock inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.1 | | AT1G70700 | 'syringolin; 20 micromolar' vs 'none' in 'powdery mildew infected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.1 | | AT1G70700 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 3 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.1 | | AT1G70700 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 1 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.1 | | AT1G70700 | 'ceh1 mutant' vs 'wild type' | genotype | Transcriptome of Arabidopsis thaliana ceh1 mutant |
1 | | AT1G70700 | 'ninja-1 loss of function mutation' vs 'wild type phenotype' | phenotype | RNA-seq analysis of frs7;frs12;ninja-1 triple loss-of-function seedlings |
1 | | AT1G70700 | 'frs12; frs7 and ninja-1 triple loss of function mutation' vs 'wild type phenotype' | phenotype | RNA-seq analysis of frs7;frs12;ninja-1 triple loss-of-function seedlings |
-1 | | AT1G70700 | 'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1 | | AT1G70700 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1 | | AT1G70700 | 'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Salicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants. |
-1 | | AT1G70700 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1 | | AT1G70700 | 'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
1 | | AT1G70700 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
-1 | | AT1G70700 | 'low light; DBMIB; 24 micromolar; 0.5 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1 | | AT1G70700 | 'gun4-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin |
1 | | AT1G70700 | 'hmr-5 null mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light |
-1 | | AT1G70700 | 'dms4 mutant' vs 'wild type' at '21 day' | age, genotype | Transcription profiling of Arabidopsis dms4-1, drd1-1 and drd1-6 mutant seedlings against wild-type to identify targets of IWR1-like transcription factor |
1 | | AT1G70700 | 'ninja-1' vs 'wild type' | genotype | Root transcriptome of ninja-1 |
-1 | | AT1G70700 | 'Fusarium oxysporum' vs 'none' in 'pft1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for pft1 after infection with Fusarium oxysporum |
1 | | AT1G70700 | 'hypoxia' vs 'control' in 'wild type' | genotype, growth condition | Expression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions |
1 | | AT1G70700 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1 | | AT1G70700 | 'iaa17-6 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1 | | AT1G70700 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
1 | | AT1G70700 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
-1 | | AT1G70700 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'petal differentiation and expansion stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-1 | | AT1G70700 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1 | | AT1G70700 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
-1 | | AT1G70700 | 'ga1-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-1 | | AT1G70700 | '2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
-1 | | AT1G70700 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1 | | AT1G70700 | 'catalase2 mutant' vs 'wild type; transferred to air for 2 days in short day length regime' | genotype, growth condition | Transcription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod |
-1 | | AT1G70700 | 'after cold treatment at 4 degrees Celsius' vs 'before cold treatment' | growth condition | Transcription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level |
1 | | AT1G70700 | 'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
1 | | AT1G70700 | 'WOX1-1' vs 'wild type' | genotype | Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis. |
-1 | | AT1G70700 | 'MYB96 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants |
1 | | AT1G70700 | '1 millimolar ammonium' at '1.5 hour' vs 'control' at '0 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after growth with either ammonium or nitrate |
1 | | AT1G70700 | 'abscisic acid' vs 'ethanol' | compound | Transcription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea |
1 | | AT1G70700 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 5 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1 | | AT1G70700 | 'ga1-3 mutant' vs 'wild type' in 'seed' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
-1 | | AT1G70700 | 'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype' | genotype | Functional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis |