4.4 | | AT3G03170 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
4.4 | | AT3G03170 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'whole root' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
3.7 | | AT3G03170 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
3.5 | | AT3G03170 | '24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
3.4 | | AT3G03170 | 'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive' | genotype, phenotype | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
3.2 | | AT3G03170 | 'water deprivation' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after water deprivation |
3.2 | | AT3G03170 | 'COBL9::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
3.1 | | AT3G03170 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |
3.1 | | AT3G03170 | '24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
-3 | | AT3G03170 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.9 | | AT3G03170 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.8 | | AT3G03170 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.7 | | AT3G03170 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
2.7 | | AT3G03170 | 'NaCl' vs 'control' in 'cortex cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-2.6 | | AT3G03170 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '8 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
2.6 | | AT3G03170 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-2.6 | | AT3G03170 | 'srk2dei triple mutant' vs 'wild type' in '50 micromolar abscisic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-2.6 | | AT3G03170 | 'Blumeria graminis f. sp. hordei K1; avirulent; 18 hour' vs 'none; wild type phenotype; 18 hour' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
2.6 | | AT3G03170 | 'WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
2.5 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
2.5 | | AT3G03170 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-2.5 | | AT3G03170 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.4 | | AT3G03170 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-2.4 | | AT3G03170 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
2.4 | | AT3G03170 | 'water deprivation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
2.3 | | AT3G03170 | 'clf28 mutant' vs 'wild type' in 'shoot' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-2.3 | | AT3G03170 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.3 | | AT3G03170 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2.3 | | AT3G03170 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.3 | | AT3G03170 | 'rhd6 WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
2.2 | | AT3G03170 | '14 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
2.2 | | AT3G03170 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-2.2 | | AT3G03170 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.2 | | AT3G03170 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
2.2 | | AT3G03170 | '18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
-2.1 | | AT3G03170 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
2.1 | | AT3G03170 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
2.1 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
2.1 | | AT3G03170 | 'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
2.1 | | AT3G03170 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-2.1 | | AT3G03170 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
2 | | AT3G03170 | '10 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
2 | | AT3G03170 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
2 | | AT3G03170 | 'abscisic acid; 50 micromolar' vs 'mock' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
2 | | AT3G03170 | 'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
2 | | AT3G03170 | '1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
2 | | AT3G03170 | '50 micromolar abscisic acid' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
2 | | AT3G03170 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
2 | | AT3G03170 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2 | | AT3G03170 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2 | | AT3G03170 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-2 | | AT3G03170 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2 | | AT3G03170 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
1.9 | | AT3G03170 | 'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-3' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
1.9 | | AT3G03170 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
1.9 | | AT3G03170 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
-1.9 | | AT3G03170 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.9 | | AT3G03170 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.9 | | AT3G03170 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
1.9 | | AT3G03170 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development |
1.9 | | AT3G03170 | 'abscisic acid 2 micromolar' vs 'control' in 'no SNRK3.15 expression' | growth condition, phenotype | Transcription profiling of DEX-inducible SNRK3.15 Arabidopsis seedlings in the presence of ABA |
-1.9 | | AT3G03170 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.9 | | AT3G03170 | 'tcx2; WOX5:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.9 | | AT3G03170 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.9 | | AT3G03170 | 'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T8”)' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-1.9 | | AT3G03170 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.8 | | AT3G03170 | '7 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
1.8 | | AT3G03170 | 'indole-3-acetic acid' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
-1.8 | | AT3G03170 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.8 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.7 | | AT3G03170 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
1.7 | | AT3G03170 | 'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.7 | | AT3G03170 | '4.5 micromolar Naphtalenacetic acid' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-1.7 | | AT3G03170 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.7 | | AT3G03170 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.7 | | AT3G03170 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
1.7 | | AT3G03170 | 'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.6 | | AT3G03170 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1.6 | | AT3G03170 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.6 | | AT3G03170 | 'seed after 48 h of stratification (48 h S)' vs 'seed after 12 h of stratification (12 h S)' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
1.6 | | AT3G03170 | 'fus3-3 mutant' vs 'wild type' in '12 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
1.6 | | AT3G03170 | 'fus3-3 mutant' vs 'wild type' in '8 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.6 | | AT3G03170 | 'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
-1.6 | | AT3G03170 | 'Blumeria graminis f. sp. hordei A6; virulent; 18 hour' vs 'none; wild type phenotype; 18 hour' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
1.5 | | AT3G03170 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
1.5 | | AT3G03170 | '3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
-1.5 | | AT3G03170 | 'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
1.5 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.5 | | AT3G03170 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '2 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.5 | | AT3G03170 | 'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
1.5 | | AT3G03170 | 'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.5 | | AT3G03170 | 'NaCl' vs 'control' in 'epidermal and lateral root cap cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
1.5 | | AT3G03170 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
1.5 | | AT3G03170 | 'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T6”)' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-1.5 | | AT3G03170 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.4 | | AT3G03170 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
1.4 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
-1.4 | | AT3G03170 | 'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
-1.4 | | AT3G03170 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-1.4 | | AT3G03170 | 'hypoxia' vs 'normoxia' in 'HRE1-RNAi20' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
1.4 | | AT3G03170 | 'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.4 | | AT3G03170 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-1.4 | | AT3G03170 | 'ga1 muant and SCL3 overexpression' vs 'ga1 mutant' | genotype | Arabidopsis thaliana roots at 7DAG; ga1, ga1 scl3 (LOF) and ga1 SCL3 OE (GOF) |
1.4 | | AT3G03170 | 'auxin' vs 'none' | compound | Transcription profiling of Arabidopsis plants treated with indole-3-acetic acid (IAA) or IAA plus dexamethasone |
-1.4 | | AT3G03170 | 'paclobutrazol; 20 micromolar' vs 'none' in 'endosperm' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-1.4 | | AT3G03170 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
-1.4 | | AT3G03170 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.4 | | AT3G03170 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.4 | | AT3G03170 | 'NaCl' vs 'control' in 'protophloem cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.4 | | AT3G03170 | 'phytoprostane A1 75 micromolar' vs 'methanol 0.5 volume percent' | compound, dose | Response of Arabidopsis cell culture to phytoprostane A1 |
-1.3 | | AT3G03170 | 'mechanical stimulus - water from spray bottle; 25 minute' vs 'none; 0 minute' in 'myc324' | genotype, stimulus, time | RNAseq analysis of early touch responses in myc234 mutants in Arabidopsis |
1.3 | | AT3G03170 | 'drought environment' vs 'none' in 'ahl10-1' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
1.3 | | AT3G03170 | 'indole-3-acetic acid' vs 'none' in 'arf19-1' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
1.3 | | AT3G03170 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'root' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
1.3 | | AT3G03170 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'leaf' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
1.3 | | AT3G03170 | 'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
1.3 | | AT3G03170 | 'abscisic acid' vs 'ethanol' | compound | Transcription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea |
1.3 | | AT3G03170 | 'drought' vs 'control' in 'wild type; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.3 | | AT3G03170 | '35S::MIF1; dark' vs '35S::MIF1; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
1.2 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.4/2.10 double mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
1.2 | | AT3G03170 | '4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
1.2 | | AT3G03170 | 'drought environment' vs 'none' in 'wild type genotype' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
1.2 | | AT3G03170 | 'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1.2 | | AT3G03170 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
-1.2 | | AT3G03170 | 'seed after 12 h of stratification (12 h S)' vs 'seed after 1 h of stratification (1 h S)' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
-1.2 | | AT3G03170 | 'ant-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
-1.2 | | AT3G03170 | 'ant-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
1.2 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.2 | | AT3G03170 | 'arp6-1; mbd9-3' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
-1.2 | | AT3G03170 | 'ga1-3 mutant' vs 'wild type' in 'seed' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
1.2 | | AT3G03170 | '10 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1.2 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.2 | | AT3G03170 | 'srk2dei triple mutant' vs 'wild type' in 'dehydration stress' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.2 | | AT3G03170 | 'dexamethasone; 10 micromolar' vs 'none' in 'LBD18 over-expression' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing LBD16 and LBD18 to investigate downstream genes |
-1.2 | | AT3G03170 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ant1 and seu3 |
-1.2 | | AT3G03170 | 'seu-3 ant-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for seuss and/or aintegumenta |
1.2 | | AT3G03170 | 'NaCl' vs 'control' in 'stele cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.2 | | AT3G03170 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
1.1 | | AT3G03170 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
1.1 | | AT3G03170 | 'clf28 mutant' vs 'wild type' in 'root' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-1.1 | | AT3G03170 | 'continuous far-red light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.1 | | AT3G03170 | 'continuous blue light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1.1 | | AT3G03170 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
1.1 | | AT3G03170 | 'drought stress' vs 'none' in 'control' at '2 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.1 | | AT3G03170 | '6 hours' vs '0 hour' | time | CPIB Lateral Root timecourse |
1.1 | | AT3G03170 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.4 mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
-1.1 | | AT3G03170 | 'chitin' vs 'none' in 'rre1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
1.1 | | AT3G03170 | 'dehydration stress' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.1 | | AT3G03170 | 'myb36-1 (pSCR::ER:GFP)' vs 'wild type (pSCR::ER:GFP)' in 'root endodermis' | genotype, organism part | Transcription profiling by high throughput sequencing of the endodermis of Arabidopsis myb36 mutants |
1.1 | | AT3G03170 | '8 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1.1 | | AT3G03170 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
-1.1 | | AT3G03170 | 'scarecrow mutant' vs 'wild type' | genotype | Transcription profiling of Scarecrow mutant Arabidopsis root-tips of 5-day-old plants to those of wildtype reveals an evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants |
1.1 | | AT3G03170 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.1 | | AT3G03170 | 'At1G60900 homozygous knockout' vs 'wild type genotype' | genotype | RNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col). |
-1 | | AT3G03170 | 'continuous white light' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
-1 | | AT3G03170 | 'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
-1 | | AT3G03170 | 'hypoxia' vs 'normoxia' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
-1 | | AT3G03170 | 'OsSAP11 transgenic' vs 'wild type' | genotype | Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants |
1 | | AT3G03170 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1 | | AT3G03170 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
1 | | AT3G03170 | 'brm-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-1 | | AT3G03170 | 'sucrose; 1 percent' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-1 | | AT3G03170 | 'dcl1-15 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos |
1 | | AT3G03170 | 'treated with 2-(2,4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid; 5 micromolar' vs 'control' | compound | Activation of auxin signalling counteracts photorespiratory hydrogen peroxide dependent cell death |
-1 | | AT3G03170 | 'tmk1-1' vs 'wild type genotype' | genotype | TMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana |
1 | | AT3G03170 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1 | | AT3G03170 | 'NaCl' vs 'control' in 'endodermal and quiescent center cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |