AT3G04730 (IAA16)

arabidopsis thaliana

Auxin-responsive protein IAA16

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
2.7581 × 10-77-9
AT3G04730'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.3916 × 10-87-7.8
AT3G04730'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.9886 × 10-148-7.4
AT3G04730'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.0171 × 10-4-3.7
AT3G04730'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.7112 × 10-5-3.5
AT3G04730'Plasmodiophora brassicae' vs 'none' at '10 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.7606 × 10-3-3.5
AT3G04730'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.6455 × 10-9-3.3
AT3G04730'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
9.0082 × 10-4-3.1
AT3G04730'csn3-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
4.916 × 10-4-3
AT3G04730'pBeaconRFP_IAA7mll overexpressor; none' vs 'pMON999_mRFP control vector; none'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
5.1581 × 10-4-3
AT3G04730'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
4.4912 × 10-42-2.9
AT3G04730'dexamethasone; 15 micromolar' vs 'none'compoundRNA-seq to investigate Auxin responsive genes in the Arabidopsis stem
Adjusted p-valueLog2-fold change
5.1946 × 10-4-2.9
AT3G04730'csn4-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.9918 × 10-47-2.7
AT3G04730'tcx2; TMO5:3xGFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
4.2858 × 10-5-2.7
AT3G04730'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.7339 × 10-102.6
AT3G04730'10 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
4.7745 × 10-62.5
AT3G04730'oxt6:AtCPSF30' vs 'wild type'genotypeA polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.8184 × 10-72.4
AT3G04730'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
2.182 × 10-5-2.4
AT3G04730'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
7.0194 × 10-6-2.3
AT3G04730'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
4.4607 × 10-7-2.2
AT3G04730'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
3.86 × 10-6-2.2
AT3G04730'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
2.5974 × 10-5-2.1
AT3G04730'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
1.5834 × 10-3-2.1
AT3G04730'abscisic acid; 20 micromolar' vs 'none' in 'endosperm'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.6037 × 10-3-2.1
AT3G04730'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none'time, treatmentExpression profiling of Col-0 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
3.6442 × 10-402
AT3G04730'5 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
9.0126 × 10-7-2
AT3G04730'3% glucose; 0.1% epibrassinolide' vs 'none'growth conditionGenome wide analysis of glucose brassinosteroid interaction in Arabidopsis
Adjusted p-valueLog2-fold change
3.3205 × 10-52
AT3G04730'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
1.4842 × 10-3-2
AT3G04730'light pulse in the middle of the day' vs 'day time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
2.6878 × 10-3-2
AT3G04730'AtGATA2ox transgenic' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1
Adjusted p-valueLog2-fold change
1.8507 × 10-2-2
AT3G04730'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
2.3614 × 10-501.9
AT3G04730'4 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
5.3457 × 10-81.9
AT3G04730'seed after 48 h of stratification (48 h S)' vs 'seed after 12 h of stratification (12 h S)'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
1.6417 × 10-71.9
AT3G04730'lec1-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
2.4234 × 10-13-1.8
AT3G04730'bzip17 -/- ; bzip28 -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
1.4596 × 10-61.8
AT3G04730'abi3-6 mutant' vs 'wild type' in '16 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
7.8773 × 10-51.8
AT3G04730'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
3.7714 × 10-311.7
AT3G04730'14 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.7996 × 10-28-1.7
AT3G04730'ANAC017 OEb' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
6.684 × 10-61.7
AT3G04730'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root columella root cap'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
4.1478 × 10-31.7
AT3G04730'pil5-1' vs 'wild type' in 'far-red light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pil5 after exposure to red and far-red light or far-red light only
Adjusted p-valueLog2-fold change
2.1024 × 10-20-1.6
AT3G04730'350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
5.5142 × 10-61.6
AT3G04730'antimycin A; 50 micromolar' vs 'water' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A
Adjusted p-valueLog2-fold change
4.0434 × 10-51.6
AT3G04730'240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
8.6738 × 10-4-1.6
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Columbia-0'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
2.3051 × 10-3-1.6
AT3G04730'5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
3.5891 × 10-3-1.6
AT3G04730'paclobutrazol; 20 micromolar' vs 'none' in 'endosperm'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.1137 × 10-2-1.6
AT3G04730'2hr continuous KNO3, MSX and Gln' vs '2hr continuous KCl and MSX' in 'pericycle'compound, organism partTranscription profiling by array of Arabidopsis root cells after treatment with KNO3
Adjusted p-valueLog2-fold change
3.1128 × 10-12-1.5
AT3G04730'ANAC017 OEa' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.0735 × 10-8-1.5
AT3G04730''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
8.5348 × 10-7-1.5
AT3G04730'auxin' vs 'none' in '35 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
1.0285 × 10-61.5
AT3G04730't-zeatin; Col-0' vs 'DMSO; Col-0'compound, ecotypeTranscription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.0285 × 10-61.5
AT3G04730'trans-zeatin; 20 micromolar' vs 'control' in 'wild type'compound, genotypeTranscription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin
Adjusted p-valueLog2-fold change
1.0227 × 10-51.5
AT3G04730'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
6.7969 × 10-51.5
AT3G04730'antimycin A; 50 micromolar; wild type' vs 'water; wild type'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
3.0346 × 10-4-1.5
AT3G04730'tga2;tga5;tga6 mutant; phytoprostane' vs 'Col-0; phytoprostane'compound, genotypeTranscription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid
Adjusted p-valueLog2-fold change
6.2389 × 10-31.5
AT3G04730'arf7 arf19 double mutant' vs 'wild type' in 'Root Mature Zone'genotype, organism partTranscription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19
Adjusted p-valueLog2-fold change
1.7559 × 10-2-1.5
AT3G04730'Plasmodiophora brassicae' vs 'none' at '23 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.671 × 10-2-1.5
AT3G04730'Botrytis cinerea' vs 'none' at '48 hour'infect, timeTranscription profiling by array of Arabidopsis after infection with Botrytis cinerea
Adjusted p-valueLog2-fold change
1.0827 × 10-14-1.4
AT3G04730'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.1778 × 10-6-1.4
AT3G04730'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
4.5891 × 10-51.4
AT3G04730'abi3-6 mutant' vs 'wild type' in '12 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
7.6072 × 10-51.4
AT3G04730'antimycin A; 50 micromolar' vs 'water' in 'rao1-2 mutant'compound, genotypeTranscription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A
Adjusted p-valueLog2-fold change
1.6668 × 10-4-1.4
AT3G04730'Pseudomonas syringae ES4326' vs 'none' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
1.8581 × 10-41.4
AT3G04730'dcl1-15 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos
Adjusted p-valueLog2-fold change
3.5197 × 10-4-1.4
AT3G04730'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
5.773 × 10-41.4
AT3G04730'8 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
6.0907 × 10-41.4
AT3G04730'COBL9::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
7.6863 × 10-41.4
AT3G04730'strigolactone GR24; 2.5 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidosis seeds after treatment with EL6 and GR24 to investigate the effect on germination
Adjusted p-valueLog2-fold change
8.5496 × 10-4-1.4
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Coimbra'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
1.3276 × 10-3-1.4
AT3G04730'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '6 hour'genotype, infect, timeMetabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans
Adjusted p-valueLog2-fold change
1.7683 × 10-3-1.4
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Tenela'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
7.0551 × 10-23-1.3
AT3G04730'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
5.6197 × 10-171.3
AT3G04730'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
2.6413 × 10-61.3
AT3G04730'trans-zeatin; 20 micromolar' vs 'control' in 'arr10 arr12 double mutant'compound, genotypeTranscription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin
Adjusted p-valueLog2-fold change
2.6413 × 10-61.3
AT3G04730't-zeatin; SALK_098604, SALK_054752' vs 'DMSO; SALK_098604, SALK_054752'compound, ecotypeTranscription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.6265 × 10-51.3
AT3G04730'ASL9 overexpressor' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing ASL9
Adjusted p-valueLog2-fold change
5.3339 × 10-51.3
AT3G04730'fus3-3 mutant' vs 'wild type' in '8 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
1.2522 × 10-31.3
AT3G04730'Columbia-0; alx8' vs 'Columbia-0; wild type'ecotype, genotypeTranscription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions
Adjusted p-valueLog2-fold change
5.0627 × 10-24-1.2
AT3G04730'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
3.6882 × 10-11-1.2
AT3G04730'ANAC017 OEb' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
3.7998 × 10-81.2
AT3G04730'low light; DBMIB; 24 micromolar; 0.5 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
8.2415 × 10-81.2
AT3G04730'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant'compound, genotypeAn Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress
Adjusted p-valueLog2-fold change
1.629 × 10-7-1.2
AT3G04730'Spt4 knock down' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2
Adjusted p-valueLog2-fold change
1.6339 × 10-7-1.2
AT3G04730'60 minutes after cordycepin treatment' vs 'immediately after cordycepin treatment' in 'wild type genotype'genotype, sampling time pointTranscription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin
Adjusted p-valueLog2-fold change
2.35 × 10-6-1.2
AT3G04730'3 percent glucose' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
9.932 × 10-61.2
AT3G04730'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.2439 × 10-51.2
AT3G04730'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant'genotypeTranscription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only
Adjusted p-valueLog2-fold change
4.876 × 10-51.2
AT3G04730'At1G60900 homozygous knockout' vs 'wild type genotype'genotypeRNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col).
Adjusted p-valueLog2-fold change
6.3479 × 10-51.2
AT3G04730'antimycin A; 50 micromolar' vs 'water' in 'rao1-1 mutant'compound, genotypeTranscription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A
Adjusted p-valueLog2-fold change
6.4794 × 10-5-1.2
AT3G04730'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
6.5943 × 10-5-1.2
AT3G04730'tcx2; CYCD6:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
1.1268 × 10-4-1.2
AT3G04730'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
1.6771 × 10-4-1.2
AT3G04730'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '6 hour'genotype, infect, timeMetabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans
Adjusted p-valueLog2-fold change
2.6688 × 10-4-1.2
AT3G04730'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance
Adjusted p-valueLog2-fold change
6.9847 × 10-41.2
AT3G04730'120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
1.2349 × 10-31.2
AT3G04730'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
3.827 × 10-31.2
AT3G04730'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
4.3714 × 10-31.2
AT3G04730'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
4.4792 × 10-3-1.2
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
9.504 × 10-3-1.2
AT3G04730'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
1.5592 × 10-2-1.2
AT3G04730'cabbage leaf curl virus infected' vs 'mock infected'infectTranscription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus
Adjusted p-valueLog2-fold change
2.0689 × 10-30-1.1
AT3G04730'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
3.0413 × 10-221.1
AT3G04730'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.9789 × 10-14-1.1
AT3G04730'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.3149 × 10-11-1.1
AT3G04730'ANAC017 OEa' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.4296 × 10-6-1.1
AT3G04730'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
1.4532 × 10-6-1.1
AT3G04730'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
6.3407 × 10-61.1
AT3G04730'chr11-1 chr17-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis chr11-1 chr17-1 mutants
Adjusted p-valueLog2-fold change
1.3033 × 10-51.1
AT3G04730'antimycin A; 50 micromolar; anac017-1' vs 'water; anac017-1'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
1.4577 × 10-51.1
AT3G04730'9 hr hypoxia' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
1.982 × 10-5-1.1
AT3G04730'val1 mutant' vs 'wild type' at '10 days after pollination'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
4.6014 × 10-51.1
AT3G04730'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype'compound, genotypeAn Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress
Adjusted p-valueLog2-fold change
4.7731 × 10-51.1
AT3G04730'S-nitrosocysteine; 1 millimolar' vs 'buffer'compoundTranscription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO)
Adjusted p-valueLog2-fold change
5.7615 × 10-51.1
AT3G04730'lec2-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
7.1432 × 10-51.1
AT3G04730'antimycin A; 50 micromolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
1.3499 × 10-41.1
AT3G04730'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole'growth condition, organism partTranscription profiling by array of Arabidopsis subjected to far-red light pulse treatment
Adjusted p-valueLog2-fold change
2.4913 × 10-4-1.1
AT3G04730'12 hour (dark)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
2.5012 × 10-4-1.1
AT3G04730'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
3.5578 × 10-4-1.1
AT3G04730'NaCl' vs 'control' in 'epidermal and lateral root cap cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
5.0567 × 10-4-1.1
AT3G04730'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
5.7301 × 10-4-1.1
AT3G04730'8 hour (light)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
6.0763 × 10-41.1
AT3G04730'mock inoculation' vs 'control' in 'agb1-1 mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
9.0301 × 10-41.1
AT3G04730'mock inoculation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
1.9381 × 10-31.1
AT3G04730'60 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
1.9943 × 10-3-1.1
AT3G04730'myb21-5, myb24-5 double mutant' vs 'wild type' at 'flowering stage'developmental stage, genotypeTranscription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant
Adjusted p-valueLog2-fold change
2.1917 × 10-3-1.1
AT3G04730'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
2.761 × 10-3-1.1
AT3G04730'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
6.5363 × 10-31.1
AT3G04730'indole-3-acetic acid; 5 micromolar' vs 'none' in 'columella'compound, organism partTranscription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls
Adjusted p-valueLog2-fold change
6.629 × 10-3-1.1
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Rschew'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
1.6798 × 10-21.1
AT3G04730'Zat10 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing Zat10 under the control of the 35S promoter
Adjusted p-valueLog2-fold change
4.5275 × 10-2-1.1
AT3G04730'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
1.5382 × 10-121
AT3G04730'prmt4a;4b double mutant' vs 'wild type'genotypeGenome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes
Adjusted p-valueLog2-fold change
7.2866 × 10-61
AT3G04730'oligomycin' vs 'control' at '4 hour'growth condition, timeEffect of oligomycin on transcript levels in Arabidopsis seedling cultures
Adjusted p-valueLog2-fold change
2.3599 × 10-51
AT3G04730'low light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.4626 × 10-51
AT3G04730'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
9.1236 × 10-5-1
AT3G04730'cs26 mutant' vs 'wild type' in 'long day photoperiod'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods
Adjusted p-valueLog2-fold change
1.1797 × 10-4-1
AT3G04730's1p -/-; s2p -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
3.7286 × 10-41
AT3G04730'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
4.2225 × 10-4-1
AT3G04730'arr22-ox' vs 'wild type' in 'none'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
6.5036 × 10-4-1
AT3G04730'arf6-2, arf8-3 double mutant' vs 'wild type' at 'flowering stage'developmental stage, genotypeTranscription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant
Adjusted p-valueLog2-fold change
9.8466 × 10-4-1
AT3G04730'tga2;tga5;tga6 mutant; 12-oxo-phytodienoic acid' vs 'Col-0; 12-oxo-phytodienoic acid'compound, genotypeTranscription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid
Adjusted p-valueLog2-fold change
1.7204 × 10-3-1
AT3G04730'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant'genotype, infectTranscription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls
Adjusted p-valueLog2-fold change
1.9567 × 10-3-1
AT3G04730'tga2;tga5;tga6 mutant; none' vs 'Col-0; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid
Adjusted p-valueLog2-fold change
2.0261 × 10-31
AT3G04730'40 micromolar; rotenone' vs '0.25 percent; methanol' at '12 hour'compound, timeTranscription profiling by array of Arabidopsis cell cultures treated with rotenone
Adjusted p-valueLog2-fold change
2.0947 × 10-3-1
AT3G04730'4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
2.1022 × 10-31
AT3G04730'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
2.5395 × 10-31
AT3G04730'2-hexenal' vs 'mock' at '1 hour'compound, timeTranscription profiling by array of Arabidopsis rosette leaves in response to aerial E-2-hexenal, one of the green leaf volatiles
Adjusted p-valueLog2-fold change
3.0661 × 10-3-1
AT3G04730'wild type; Golovinomyces orontii infection' vs 'wild type; no infection' at 7 daygenotype, infect, timeTranscription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii
Adjusted p-valueLog2-fold change
3.9629 × 10-3-1
AT3G04730'rrd2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis temperature-dependent later root fasciation mutants
Adjusted p-valueLog2-fold change
4.8425 × 10-3-1
AT3G04730'low water potential stress' vs 'control' in 'wild type'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
8.969 × 10-31
AT3G04730'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day'compound, genotype, timeTranscription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid
Adjusted p-valueLog2-fold change
9.8144 × 10-3-1
AT3G04730'flg22' vs 'water' at '1 hour'compound, timeTranscription profiling by array of Arabidopsis after treatment with oligogalacturonides
Adjusted p-valueLog2-fold change
1.2379 × 10-2-1
AT3G04730'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
2.0374 × 10-2-1
AT3G04730'flg22' vs 'water' at '3 hour'compound, timeTranscription profiling by array of Arabidopsis after treatment with oligogalacturonides
Adjusted p-valueLog2-fold change
2.3773 × 10-21
AT3G04730'abscisic acid' vs 'ethanol'compoundTranscription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea
Adjusted p-valueLog2-fold change
4.8677 × 10-21
AT3G04730'0.125 mM gold for 24 hours' vs 'untreated control'growth conditionTranscription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold