AT3G06390

arabidopsis thaliana

CASP-like protein 1D2

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
2.3482 × 10-9-7.5
AT3G06390'rhd6 WER::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
1.9104 × 10-9-7.3
AT3G06390'WER::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
6.6703 × 10-7-6
AT3G06390'COBL9::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
3.5087 × 10-315.3
AT3G06390'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3172 × 10-314.6
AT3G06390'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.876 × 10-204.4
AT3G06390'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.9683 × 10-6-4.2
AT3G06390'protoplasting' vs 'control'treatmentTranscription profiling by array of Arabidopsis protoplasted root cells after iron deprivation
Adjusted p-valueLog2-fold change
1.4404 × 10-4-3.5
AT3G06390'Meloidogyne incognita infested region' vs 'Meloidogyne incognita non-infested region' at '21 day'sampling site, timeTranscription profiling by array of Arabidopsis root cells infested with Meloidogyne incognita 14 or 21 days after inoculation
Adjusted p-valueLog2-fold change
1.391 × 10-32.9
AT3G06390'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
9.652 × 10-62.8
AT3G06390'tcx2; TMO5:3xGFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
4.3191 × 10-42.8
AT3G06390'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
1.1384 × 10-22.8
AT3G06390'100 micromolar; fenclorim' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
5.0005 × 10-6-2.7
AT3G06390'RBRcs mutant' vs 'wild type' in 'none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.6146 × 10-42.6
AT3G06390'indole-3-butyric acid; 10 micromolar; wild type' vs 'DMSO; wild type'compound, genotypeExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
Adjusted p-valueLog2-fold change
1.4026 × 10-32.5
AT3G06390'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
2.7555 × 10-3-2.5
AT3G06390'Meloidogyne incognita infested region' vs 'Meloidogyne incognita non-infested region' at '14 day'sampling site, timeTranscription profiling by array of Arabidopsis root cells infested with Meloidogyne incognita 14 or 21 days after inoculation
Adjusted p-valueLog2-fold change
4.6952 × 10-22.5
AT3G06390'2hr KNO3 then incubation in protoplast-generating solution minus enzymes with KNO3' vs '2hr KCl then incubation in protoplast-generating solution minus enzymes' in 'whole root'compound, organism partTranscription profiling by array of Arabidopsis root cells after treatment with KNO3
Adjusted p-valueLog2-fold change
1.7646 × 10-22.4
AT3G06390'tcx2; WOX5:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
5.2182 × 10-8-2.3
AT3G06390'gapcp mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for gapcp
Adjusted p-valueLog2-fold change
1.0756 × 10-6-2.3
AT3G06390'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.6912 × 10-62.3
AT3G06390'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
3.6129 × 10-6-2.3
AT3G06390'pp7l-1 loss of function mutant' vs 'wild type genotype'genotypeSERINE/THREONINE-PROTEIN PHOSPHATASE7-LIKE PP7L Regulates Chloroplast Development
Adjusted p-valueLog2-fold change
3.2564 × 10-4-2.3
AT3G06390'Plasmodiophora brassicae' vs 'none' at '23 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1372 × 10-3-2.3
AT3G06390'5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
9.6245 × 10-21-2.2
AT3G06390'Phytophthora parasitica' vs 'none' in 'wild type genotype'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
9.5239 × 10-8-2.2
AT3G06390'dicamba; 7 millimolar' vs 'none'compoundTranscription profiling by array of Arabidopsis after treatment with dicamba
Adjusted p-valueLog2-fold change
7.8069 × 10-7-2.2
AT3G06390'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
9.6837 × 10-6-2.2
AT3G06390'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
2.7465 × 10-5-2.2
AT3G06390'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
5.9116 × 10-5-2.2
AT3G06390'dehydration stress' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
4.4919 × 10-42.2
AT3G06390'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
1.4757 × 10-26-2.1
AT3G06390'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
4.2297 × 10-13-2.1
AT3G06390'atphb3 anac017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
9.5543 × 10-62.1
AT3G06390'fug1-3 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
1.604 × 10-5-2.1
AT3G06390'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
6.3309 × 10-4-2.1
AT3G06390'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'root'growth condition, organism partTranscriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis
Adjusted p-valueLog2-fold change
1.1679 × 10-3-2.1
AT3G06390'drought stress' vs 'none' in 'control' at '24 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
1.1804 × 10-32.1
AT3G06390'atbzip16; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'atbzip16; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
6.2603 × 10-32.1
AT3G06390'Blumeria graminis f. sp. hordei K1; avirulent; 18 hour' vs 'none; wild type phenotype; 18 hour'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
6.9264 × 10-32.1
AT3G06390'ATP, 1 millimolar' vs 'none'stimulusRNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
Adjusted p-valueLog2-fold change
1.946 × 10-2-2.1
AT3G06390'photoperiod induced flowering at 22 hours' vs 'control at 22 hours'growth condition, sampling time pointTranscription profiling by array of Arabidopsis thaliana roots following the photoperiodic induction of flowering
Adjusted p-valueLog2-fold change
2.1956 × 10-6-2
AT3G06390'srk2dei triple mutant' vs 'wild type' in 'control'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
1.1806 × 10-42
AT3G06390'12 hours' vs '9 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
2.7801 × 10-4-2
AT3G06390'arsenic; 200 micromolar' vs 'none' in 'Col-0'compound, ecotypeTranscriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis
Adjusted p-valueLog2-fold change
9.7652 × 10-42
AT3G06390'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.26 × 10-22
AT3G06390'Blumeria graminis f. sp. hordei A6; virulent; 18 hour' vs 'none; wild type phenotype; 18 hour'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
3.3186 × 10-121.9
AT3G06390'se-2 loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
1.7356 × 10-6-1.9
AT3G06390'35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar'compound, genotypeMicroarray designed to find PIN polarity regulators downstream of TIR1/AFB
Adjusted p-valueLog2-fold change
2.013 × 10-6-1.9
AT3G06390'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.8418 × 10-5-1.9
AT3G06390'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
5.162 × 10-4-1.9
AT3G06390'csn3-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
7.3712 × 10-31.9
AT3G06390'wild type; 16 degree celsius' vs 'wild type; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
2.6018 × 10-121.8
AT3G06390'se-2; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
3.7681 × 10-5-1.8
AT3G06390'Rhizoctonia solani AG2-1' vs 'mock'infectExpression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
Adjusted p-valueLog2-fold change
1.0617 × 10-11-1.7
AT3G06390'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
6.1484 × 10-4-1.7
AT3G06390'arsenic; 100 micromolar' vs 'none' in 'Col-0'compound, ecotypeTranscriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis
Adjusted p-valueLog2-fold change
7.9318 × 10-31.7
AT3G06390'fus3-3 mutant' vs 'wild type' in '8 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
3.8371 × 10-21.7
AT3G06390'9 hours' vs '6 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
4.9627 × 10-31-1.6
AT3G06390'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar'stimulusEthylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway.
Adjusted p-valueLog2-fold change
1.9774 × 10-51.6
AT3G06390'15 hours' vs '12 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
1.3144 × 10-4-1.6
AT3G06390'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
6.5209 × 10-4-1.6
AT3G06390'csn4-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.2195 × 10-31.6
AT3G06390'phosphate deprivation' vs 'control' in 'wild type genotype; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
4.0186 × 10-31.6
AT3G06390'35S::MIF1; dark' vs '35S::MIF1; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
5.9944 × 10-31.6
AT3G06390'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.5632 × 10-14-1.5
AT3G06390'Phytophthora parasitica' vs 'none' in 'gsnor1'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
6.1261 × 10-8-1.5
AT3G06390'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day'age, time, treatmentTranscription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA
Adjusted p-valueLog2-fold change
2.9401 × 10-71.5
AT3G06390'hyl1 loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
2.7444 × 10-5-1.5
AT3G06390'auxin' vs 'none' in '35 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
6.5106 × 10-41.5
AT3G06390'ein2-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
2.0231 × 10-3-1.5
AT3G06390's1p -/-; s2p -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
2.6846 × 10-31.5
AT3G06390'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
9.3301 × 10-3-1.5
AT3G06390'trichostatin A 2.5 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
4.9509 × 10-21.5
AT3G06390'350 ppb ozone exposure for 2hr' vs 'none' in 'wild type'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
2.7891 × 10-10-1.4
AT3G06390'top3A-2' vs 'wild type genotype'genotypeTranscriptome analysis of top3A-2 complementation lines in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.2058 × 10-71.4
AT3G06390'hyl1; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
5.7564 × 10-5-1.4
AT3G06390'Rhizoctonia solani AG8' vs 'mock'infectExpression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
Adjusted p-valueLog2-fold change
1.2348 × 10-41.4
AT3G06390'gabaculin' vs 'no compound' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin
Adjusted p-valueLog2-fold change
2.835 × 10-41.4
AT3G06390'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.1652 × 10-3-1.4
AT3G06390'photoperiod induced flowering at 16 hours' vs 'control at 16 hours'growth condition, sampling time pointTranscription profiling by array of Arabidopsis thaliana roots following the photoperiodic induction of flowering
Adjusted p-valueLog2-fold change
6.5811 × 10-3-1.4
AT3G06390'3% glucose' at '2 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
7.9876 × 10-31.4
AT3G06390'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.7931 × 10-21.4
AT3G06390'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.6214 × 10-171.3
AT3G06390'hda6 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
2.8814 × 10-121.3
AT3G06390'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
1.9189 × 10-6-1.3
AT3G06390'low phosphate' vs 'control' in 'none; wild type'compound, genotype, growth conditionTranscription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes
Adjusted p-valueLog2-fold change
4.2622 × 10-61.3
AT3G06390'T-DNA knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
1.5546 × 10-51.3
AT3G06390'T-DNA knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
5.1054 × 10-5-1.3
AT3G06390'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
1.3566 × 10-4-1.3
AT3G06390'50 micromolar abscisic acid' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
2.6701 × 10-41.3
AT3G06390'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; root'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
3.0934 × 10-41.3
AT3G06390'ahk2ahk3' vs 'wild type' in '23 degree celsius'genotype, temperatureTranscription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.4122 × 10-3-1.3
AT3G06390'Heterodera schachtii' vs 'none'infectTranscription profiling by array of Arabidopsis roots infected with the cyst nematode H. schachtii
Adjusted p-valueLog2-fold change
3.5691 × 10-3-1.3
AT3G06390'primisulfuron' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after treatment with primisulfuron herbicide
Adjusted p-valueLog2-fold change
4.0685 × 10-31.3
AT3G06390'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
8.8899 × 10-3-1.3
AT3G06390'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.279 × 10-2-1.3
AT3G06390'hmr-22 weak allele mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light
Adjusted p-valueLog2-fold change
3.2906 × 10-21.3
AT3G06390'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.5682 × 10-21.3
AT3G06390'amp1-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild type and AMP1 mutant seeds
Adjusted p-valueLog2-fold change
3.7437 × 10-2-1.3
AT3G06390'elf3-7' vs 'wild type' at '16 degree celsius'genotype, temperatureTranscription profiling by array of Arabidopsis mutant for tfl1 or elf2 after growth at different temperatures
Adjusted p-valueLog2-fold change
2.003 × 10-7-1.2
AT3G06390'drought' vs 'control' in 'camta1-3 mutant; root'genotype, growth condition, organism partRole of CAMTA1 gene under drought stress
Adjusted p-valueLog2-fold change
2.1663 × 10-51.2
AT3G06390'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-3'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
8.9191 × 10-5-1.2
AT3G06390'oxt6:AtCPSF30' vs 'wild type'genotypeA polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.1951 × 10-41.2
AT3G06390'phosphate-lacking medium' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
9.785 × 10-4-1.2
AT3G06390'nematode aqueous diffusate' vs 'control'stimulusTranscription profiling by array of Arabidopsis roots treated with nematode aqueous diffusate (NemaWater)
Adjusted p-valueLog2-fold change
1.3814 × 10-3-1.2
AT3G06390'PIF5 overexpressing; high red/far-red light ratio' vs 'wild type; high red/far-red light ratio'genotype, treatmentPhytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light
Adjusted p-valueLog2-fold change
1.5858 × 10-3-1.2
AT3G06390'hid1 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis hid1 mutant seedlings grown under continuous red light
Adjusted p-valueLog2-fold change
3.0063 × 10-31.2
AT3G06390'scarecrow mutant' vs 'wild type'genotypeTranscription profiling of Scarecrow mutant Arabidopsis root-tips of 5-day-old plants to those of wildtype reveals an evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
Adjusted p-valueLog2-fold change
4.9496 × 10-31.2
AT3G06390'DMSO; ibr1ibr3ibr10' vs 'DMSO; wild type'compound, genotypeExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
Adjusted p-valueLog2-fold change
4.9513 × 10-31.2
AT3G06390'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
9.0311 × 10-3-1.2
AT3G06390'1,4-dithiothreitol; 2 millimolar' vs 'none' in 'wild type genotype'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
2.6397 × 10-21.2
AT3G06390'100 micromolar; fenclorim' vs 'control' at '4 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
4.1102 × 10-121.1
AT3G06390'hda5 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
6.7182 × 10-7-1.1
AT3G06390'Space Flight' vs 'none' in '4 day; Col-0'age, ecotype, environmental stressPlant development on ISS differs from the development on the ground and is influenced by the genetic background.
Adjusted p-valueLog2-fold change
8.0971 × 10-5-1.1
AT3G06390'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
3.4248 × 10-4-1.1
AT3G06390'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.045 × 10-3-1.1
AT3G06390'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
3.5694 × 10-31.1
AT3G06390'ahk2ahk3' vs 'wild type' in '1 degree celsius'genotype, temperatureTranscription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.1088 × 10-31.1
AT3G06390'CL37' vs 'fae1 mutant' in '9 to 10 DPA'developmental stage, genotypeRNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids
Adjusted p-valueLog2-fold change
1.3429 × 10-21.1
AT3G06390'NaCl' vs 'control' in 'cortex cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
1.6485 × 10-21.1
AT3G06390'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
2.5474 × 10-2-1.1
AT3G06390'E2Fa-DPa overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing E2Fa-Dpa
Adjusted p-valueLog2-fold change
2.5986 × 10-2-1.1
AT3G06390'3% glucose' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
3.1238 × 10-21.1
AT3G06390'serrate-1 mutant' vs 'wild type'genotypeTranscription profiling by array of serrate-1 mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
4.052 × 10-2-1.1
AT3G06390'bzip17 -/- ; bzip60 -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
4.5627 × 10-2-1.1
AT3G06390'bzip17 -/- ; bzip28 -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
4.5444 × 10-9-1
AT3G06390'frs12; frs7 and ninja-1 triple loss of function mutation' vs 'wild type phenotype'phenotypeRNA-seq analysis of frs7;frs12;ninja-1 triple loss-of-function seedlings
Adjusted p-valueLog2-fold change
7.2812 × 10-71
AT3G06390'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA'fraction, genotype, protocolDirect RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.8577 × 10-7-1
AT3G06390'gul2-1 bri1-5 double mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
1.2232 × 10-4-1
AT3G06390'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.4916 × 10-41
AT3G06390'fry1-6 mutant' vs 'wild type' in 'grown on Linsmaier and Skoog media'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis fry1 and xrn single and double mutants
Adjusted p-valueLog2-fold change
1.7831 × 10-4-1
AT3G06390'atphb3 ANAC017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
8.1549 × 10-4-1
AT3G06390'hypoxia' vs 'control' in 'transgenic LeB4::AtHb1'genotype, growth conditionExpression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions
Adjusted p-valueLog2-fold change
1.4809 × 10-31
AT3G06390'ein2-1; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
1.7719 × 10-3-1
AT3G06390'SCO3-1 point mutation' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for sco3
Adjusted p-valueLog2-fold change
3.0481 × 10-31
AT3G06390'synthetic strigolactone GR24 10 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidopsis thaliana seedlings treated with CTL-VI or GR24
Adjusted p-valueLog2-fold change
3.6661 × 10-31
AT3G06390'Agrobacterium tumefaciens C58' vs 'none'infectTranscription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development
Adjusted p-valueLog2-fold change
6.9461 × 10-31
AT3G06390'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'DMSO; ibr1ibr3ibr10'compound, genotypeExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
Adjusted p-valueLog2-fold change
7.1845 × 10-3-1
AT3G06390'dehydration; 46T' vs 'none; 46T'environmental stress, genotypeTranscription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis
Adjusted p-valueLog2-fold change
1.2521 × 10-2-1
AT3G06390'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.515 × 10-2-1
AT3G06390'Plasmodiophora brassicae' vs 'none' at '10 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.6825 × 10-21
AT3G06390'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
2.8129 × 10-2-1
AT3G06390'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant'compound, genotypeRNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment.