AT3G16770 (RAP2-3)

arabidopsis thaliana

Ethylene-responsive transcription factor RAP2-3

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Arabidopsis thaliana
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Showing 47 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
1.1891 × 10-5-6.4
AT3G16770'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
5.2928 × 10-5-5.8
AT3G16770'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
5.1341 × 10-16-5.6
AT3G16770'ein2-5' vs 'wild type genotype' in 'none; 8 minute'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
3.8095 × 10-5-5.6
AT3G16770'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
3.8414 × 10-4-5.2
AT3G16770'long day length regimen' at '3 day' vs 'none' at '0 day'growth condition, timeAnalysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and an LRR protein that promotes flowering
Adjusted p-valueLog2-fold change
2.1219 × 10-45
AT3G16770'ams mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for dyt1 or ams
Adjusted p-valueLog2-fold change
5.18 × 10-4-5
AT3G16770'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
4.2568 × 10-4-4.6
AT3G16770'amp1-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild type and AMP1 mutant seeds
Adjusted p-valueLog2-fold change
1.26 × 10-24.5
AT3G16770'2 day; naphthaleneacetic acid' vs '0 day; no treatment' in 'stem tissue'growth condition, organism part, timeTranscription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid
Adjusted p-valueLog2-fold change
1.1961 × 10-9-4.2
AT3G16770'ein2-1; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
00
Log2-fold change
4
AT3G16770'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.9847 × 10-7-4
AT3G16770'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
3.3741 × 10-63.9
AT3G16770'KZ-10 x Mrk-0' vs 'Mrk-0'ecotypeTranscription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents
Adjusted p-valueLog2-fold change
5.3998 × 10-3-3.9
AT3G16770'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
5.0191 × 10-723.7
AT3G16770'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.1611 × 10-10-3.7
AT3G16770'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.1972 × 10-4-3.7
AT3G16770'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
7.4542 × 10-143.6
AT3G16770'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive'genotype, phenotypeFrom gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots.
Adjusted p-valueLog2-fold change
2.0304 × 10-8-3.6
AT3G16770'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
3.477 × 10-3-3.6
AT3G16770'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; Alternaria brassicicola' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
5.9898 × 10-1563.5
AT3G16770'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.2568 × 10-7-3.5
AT3G16770'ein2-1; elf18' at '2 hour' vs 'wild type; elf18' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
9.3723 × 10-4-3.5
AT3G16770'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
8.6415 × 10-7-3.4
AT3G16770'ein2-1; untreated' at '0 hour' vs 'wild type; untreated' at '0 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
2.1223 × 10-3-3.3
AT3G16770'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
7.8947 × 10-3-3.3
AT3G16770'ein2-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
4.8997 × 10-5-3.2
AT3G16770'ein2 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
2.1883 × 10-43.1
AT3G16770'mock inoculation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
7.8845 × 10-4-3.1
AT3G16770'SCO3-1 point mutation' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for sco3
Adjusted p-valueLog2-fold change
9.2842 × 10-4-3.1
AT3G16770'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
1.9476 × 10-392.9
AT3G16770'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.8557 × 10-342.9
AT3G16770'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
6.9483 × 10-11-2.9
AT3G16770'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
2.2637 × 10-72.9
AT3G16770'Bla-1 x Hh-0' vs 'Hh-0'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
6.3916 × 10-7-2.9
AT3G16770'met1 mutant' vs 'wild type' at '6 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
3.7107 × 10-52.9
AT3G16770'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
6.2856 × 10-70-2.8
AT3G16770'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
1.6042 × 10-54-2.8
AT3G16770'2 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
2.448 × 10-42.8
AT3G16770'NaCl' vs 'control' in 'epidermal and lateral root cap cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
6.7941 × 10-4-2.8
AT3G16770'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.6281 × 10-32.8
AT3G16770'mock inoculation' vs 'control' in 'agb1-1 mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
4.1035 × 10-80-2.7
AT3G16770'ANAC017 OEb' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
6.6496 × 10-32.7
AT3G16770'ADEK1 calpain overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing DEK1 calpain
Adjusted p-valueLog2-fold change
1.1113 × 10-138-2.6
AT3G16770'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
1.3962 × 10-57-2.6
AT3G16770'1 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.0659 × 10-362.6
AT3G16770'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
2.0028 × 10-212.6
AT3G16770'At1G60900 homozygous knockout' vs 'wild type genotype'genotypeRNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col).
Adjusted p-valueLog2-fold change
1.0705 × 10-14-2.6
AT3G16770'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
6.0179 × 10-62.6
AT3G16770'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
2.2181 × 10-32.6
AT3G16770'pnp1-1' vs 'wild type' in 'nutrient medium minus phosphate' at '3 hour'genotype, growth condition, timeTranscription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation
Adjusted p-valueLog2-fold change
1.7675 × 10-3-2.5
AT3G16770'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
2.0279 × 10-42.4
AT3G16770'cabbage leaf curl virus infected' vs 'mock infected'infectTranscription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus
Adjusted p-valueLog2-fold change
1.1104 × 10-32.4
AT3G16770'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
3.118 × 10-36-2.3
AT3G16770'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
6.4976 × 10-9-2.3
AT3G16770'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
1.9278 × 10-52.2
AT3G16770"rps10 RNAi; late onset of silencing (P3)" vs "none; wild type"RNA interference, phenotypeMicroarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein
Adjusted p-valueLog2-fold change
1.1867 × 10-4-2.2
AT3G16770'0.125 mM gold for 24 hours' vs 'untreated control'growth conditionTranscription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold
Adjusted p-valueLog2-fold change
1.2741 × 10-72.1
AT3G16770'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
1.2106 × 10-62.1
AT3G16770'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
3.0467 × 10-6-2.1
AT3G16770'Blumeria graminis f. sp. hordei K1; avirulent; 18 hour' vs 'none; wild type phenotype; 18 hour'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
3.3111 × 10-6-2.1
AT3G16770'flg22; 100 nanomolar; 30 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
6.4963 × 10-42.1
AT3G16770'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.2078 × 10-3-2.1
AT3G16770'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
4.3791 × 10-212
AT3G16770'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1833 × 10-7-2
AT3G16770'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
1.241 × 10-6-2
AT3G16770'met1 mutant' vs 'wild type' at '4 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
6.0915 × 10-62
AT3G16770'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
2.6389 × 10-42
AT3G16770'spch' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
5.794 × 10-4-2
AT3G16770'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none'time, treatmentExpression profiling of Col-0 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
4.5507 × 10-2-2
AT3G16770'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
7.5268 × 10-321.9
AT3G16770'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3146 × 10-251.9
AT3G16770'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.7146 × 10-21-1.9
AT3G16770'ANAC017 OEa' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
2.1962 × 10-61.9
AT3G16770'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
1.2492 × 10-5-1.9
AT3G16770'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar'compoundTranscription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
Adjusted p-valueLog2-fold change
1.9588 × 10-51.9
AT3G16770'low light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
3.2125 × 10-31.9
AT3G16770'Cvi-1' vs 'Ler-2'genotypeTranscription profiling by array of Arabidopsis lines grown on tilted hard agar surfaces
Adjusted p-valueLog2-fold change
4.0514 × 10-31.9
AT3G16770"rps10 RNAi; early onset of silencing (P2)" vs "none; wild type"RNA interference, phenotypeMicroarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein
Adjusted p-valueLog2-fold change
1.5968 × 10-2-1.9
AT3G16770'sucrose; wild type' vs 'control; wild type'compound, genotypeSucrose modulation of the Arabidopsis thaliana guard-cell transcriptome
Adjusted p-valueLog2-fold change
1.9813 × 10-2-1.9
AT3G16770'2hr continuous KNO3' vs 'control' in 'epidermis and cortex'compound, organism partTranscription profiling by array of Arabidopsis root cells after treatment with KNO3
Adjusted p-valueLog2-fold change
3.4463 × 10-291.8
AT3G16770'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.7215 × 10-271.8
AT3G16770'cle40-2 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis root tip from crn-3, clv2-gabi, and cle40-2 mutants
Adjusted p-valueLog2-fold change
8.5041 × 10-241.8
AT3G16770'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.9646 × 10-6-1.8
AT3G16770'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
3.9791 × 10-5-1.8
AT3G16770'from low light to high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.3121 × 10-31.8
AT3G16770'scarecrow mutant' vs 'wild type'genotypeTranscription profiling of Scarecrow mutant Arabidopsis root-tips of 5-day-old plants to those of wildtype reveals an evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
Adjusted p-valueLog2-fold change
2.5194 × 10-31.8
AT3G16770'coatlique mutant' vs 'wild type'genotypeArabidopsis thaliana embryo sac transcriptome
Adjusted p-valueLog2-fold change
2.5723 × 10-2-1.8
AT3G16770'Turnip mosaic virus' vs 'mock' in 'zone 0'infect, sampling siteTranscription profiling by of Arabidopsis leaves after infection with Potyvirus turnip mosaic virus
Adjusted p-valueLog2-fold change
8.6898 × 10-531.7
AT3G16770'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.8746 × 10-39-1.7
AT3G16770'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
7.5772 × 10-211.7
AT3G16770'10 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.9475 × 10-61.7
AT3G16770'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
4.4578 × 10-6-1.7
AT3G16770'auxin' vs 'none' in '35 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
1.5531 × 10-5-1.7
AT3G16770'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Tsu-1' ecotypeecotype, organism part, growth condition, timeTranscription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium
Adjusted p-valueLog2-fold change
2.1554 × 10-51.7
AT3G16770'oxt6:AtCPSF30' vs 'wild type'genotypeA polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.3745 × 10-51.7
AT3G16770'clf28 mutant' vs 'wild type' in 'silique'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
6.1344 × 10-4-1.7
AT3G16770'24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
1.2551 × 10-3-1.7
AT3G16770'gpt2 T-DNA mutant' vs 'wild type genotype' in 'low light intensity' at '1 day'genotype, growth condition, timeAcclimation of photosynthesis to changes in the environment results decreases oxidative stress in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.8197 × 10-31.7
AT3G16770'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
4.4226 × 10-3-1.7
AT3G16770'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
5.3382 × 10-301.6
AT3G16770'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3422 × 10-281.6
AT3G16770'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.0062 × 10-7-1.6
AT3G16770'4 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
3.7608 × 10-5-1.6
AT3G16770'met1 mutant' vs 'wild type' at '0 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
1.0693 × 10-41.6
AT3G16770'camta1/2/3 mutant; grown at 22 C and treated at 4 C for 24 hours' vs 'wild type; grown at 22 C and treated at 4 C for 24 hours'genotype, growth conditionExpression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants
Adjusted p-valueLog2-fold change
1.0793 × 10-41.6
AT3G16770'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; root'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
6.3605 × 10-41.6
AT3G16770'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
3.4911 × 10-3-1.6
AT3G16770'Pseudomonas syringae ES4326' vs 'none' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
4.136 × 10-21.6
AT3G16770'gai mutant' vs 'wild type' in 'methyl jasmonate' at '1 hour'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.0955 × 10-251.5
AT3G16770'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3679 × 10-81.5
AT3G16770'water; des1' vs 'water; wild type'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
9.4072 × 10-71.5
AT3G16770'cs26 mutant' vs 'wild type' in 'long day photoperiod'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods
Adjusted p-valueLog2-fold change
2.1041 × 10-6-1.5
AT3G16770'after cold treatment at 4 degrees Celsius' vs 'before cold treatment'growth conditionTranscription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level
Adjusted p-valueLog2-fold change
1.6613 × 10-5-1.5
AT3G16770'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar'compoundTranscription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
Adjusted p-valueLog2-fold change
1.838 × 10-5-1.5
AT3G16770'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
4.2795 × 10-5-1.5
AT3G16770'high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
1.0315 × 10-4-1.5
AT3G16770'light pulse in the middle of the night' vs 'night time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
7.2841 × 10-41.5
AT3G16770'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
3.3516 × 10-31.5
AT3G16770'cngc4 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cngc1, cngc4, or akt1
Adjusted p-valueLog2-fold change
3.3003 × 10-21.5
AT3G16770'gai mutant' vs 'wild type' in 'flg22' at '2 hour'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
3.5087 × 10-2-1.5
AT3G16770'boric acid 5 millimolar' vs 'none'compound, doseExpression data from arabidopsis root in response to boron toxicity
Adjusted p-valueLog2-fold change
3.8966 × 10-2-1.5
AT3G16770'2-hexenal' vs 'mock' at '3 hour'compound, timeTranscription profiling by array of Arabidopsis rosette leaves in response to aerial E-2-hexenal, one of the green leaf volatiles
Adjusted p-valueLog2-fold change
4.998 × 10-21.5
AT3G16770'exposed to roots of Hieracium pilosella' vs 'none'stimulusTranscription profiling by array of Arabidopsis roots exposed to roots of Hieracium pilosella to study root-root interactions
Adjusted p-valueLog2-fold change
6.7672 × 10-29-1.4
AT3G16770'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
1.0214 × 10-19-1.4
AT3G16770'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
2.5382 × 10-81.4
AT3G16770'gul2-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
2.228 × 10-6-1.4
AT3G16770'rlt1-1 rlt2-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis rlt1-1 rlt2-1 mutants
Adjusted p-valueLog2-fold change
4.3337 × 10-5-1.4
AT3G16770'3% glucose' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
3.5307 × 10-41.4
AT3G16770'bleomycin' vs 'none'stimulusTranscription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes
Adjusted p-valueLog2-fold change
3.5533 × 10-4-1.4
AT3G16770'dexamethasone and cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
8.532 × 10-41.4
AT3G16770'scrm-D;mute' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
2.3092 × 10-31.4
AT3G16770'antimycin A; 50 micromolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
2.9463 × 10-3-1.4
AT3G16770'Blumeria graminis f. sp. hordei A6; virulent; 18 hour' vs 'none; wild type phenotype; 18 hour'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
1.3818 × 10-21.4
AT3G16770'3 day' vs '0 day'sampling time pointTranscriptomes and differential gene expression at the Arabidopsis shoot meristem during flowering
Adjusted p-valueLog2-fold change
2.3034 × 10-2-1.4
AT3G16770'myb36-1 (pSCR::ER:GFP)' vs 'wild type (pSCR::ER:GFP)' in 'root endodermis'genotype, organism partTranscription profiling by high throughput sequencing of the endodermis of Arabidopsis myb36 mutants
Adjusted p-valueLog2-fold change
2.8143 × 10-2-1.4
AT3G16770'abscisic acid' vs 'ethanol'compoundTranscription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea
Adjusted p-valueLog2-fold change
1.3801 × 10-7-1.3
AT3G16770'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
3.0431 × 10-5-1.3
AT3G16770'bri1-116 null mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only
Adjusted p-valueLog2-fold change
3.8154 × 10-51.3
AT3G16770'Space Flight' vs 'none' in '4 day; Wassilewskija ecotype'age, ecotype, environmental stressPlant development on ISS differs from the development on the ground and is influenced by the genetic background.
Adjusted p-valueLog2-fold change
9.6288 × 10-5-1.3
AT3G16770'bri1-116 null mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1
Adjusted p-valueLog2-fold change
1.3406 × 10-41.3
AT3G16770'dcl1-15 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos
Adjusted p-valueLog2-fold change
2.4255 × 10-41.3
AT3G16770'short (8 hour) days at 20 degrees celsius' vs 'long (16 hour) days at 20 degrees celsius' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis ft-1 mutants
Adjusted p-valueLog2-fold change
2.967 × 10-41.3
AT3G16770'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none'stimulusTranscription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes
Adjusted p-valueLog2-fold change
2.9908 × 10-4-1.3
AT3G16770'AtGATA2ox transgenic' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1
Adjusted p-valueLog2-fold change
4.6962 × 10-4-1.3
AT3G16770'pao-1 mutant' vs 'wild type genotype' in 'none' at '0 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
6.1187 × 10-4-1.3
AT3G16770'pBeaconRFP_IAA19mll overexpressor; none' vs 'pMON999_mRFP control vector; none'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
8.0547 × 10-41.3
AT3G16770'lsm4 mutant' vs 'wild type' in 'Columbia ecotype'ecotype, genotypeTranscription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants
Adjusted p-valueLog2-fold change
1.254 × 10-31.3
AT3G16770'scrm-D' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
1.6507 × 10-3-1.3
AT3G16770'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
2.3101 × 10-31.3
AT3G16770'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
2.5788 × 10-3-1.3
AT3G16770'ethanol; 2.5 percent' vs 'control' in 'wild type; 12 days in LD + 1 day in constant light (LL)'compound, genotype, growth conditionGene expression from Inducible TOC1 expression in Arabidopsis seedlings
Adjusted p-valueLog2-fold change
2.7418 × 10-31.3
AT3G16770'returned to basal medium 1 day after osmotic stress' vs 'control' in 'leaf'growth condition, organism partTranscriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis
Adjusted p-valueLog2-fold change
5.3131 × 10-31.3
AT3G16770'nhx5-1/nhx6-1 knock outs' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants
Adjusted p-valueLog2-fold change
1.7187 × 10-21.3
AT3G16770'35S::MIF1; light' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.7605 × 10-21.3
AT3G16770'tor mutant' vs 'wild type' in 'glucose; 15 micromolar'compound, genotypeTranscription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose
Adjusted p-valueLog2-fold change
2.4703 × 10-21.3
AT3G16770'gai mutant' vs 'wild type' in 'flg22'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
2.6815 × 10-2-1.3
AT3G16770'gtl1-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis trichome from 5th and 6th rosette leaves of gtl1-1 mutant and wild type controls
Adjusted p-valueLog2-fold change
4.2675 × 10-2-1.3
AT3G16770'Botrytis cinerea' vs 'none' at '48 hour'infect, timeTranscription profiling by array of Arabidopsis after infection with Botrytis cinerea
Adjusted p-valueLog2-fold change
2.6037 × 10-25-1.2
AT3G16770'mannitol; 300 millimolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
2.7853 × 10-12-1.2
AT3G16770'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
7.2402 × 10-61.2
AT3G16770'4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none'treatmentExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Adjusted p-valueLog2-fold change
9.3712 × 10-6-1.2
AT3G16770'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day'age, time, treatmentTranscription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA
Adjusted p-valueLog2-fold change
3.7951 × 10-51.2
AT3G16770'des1-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis des1-1 mutants
Adjusted p-valueLog2-fold change
5.1132 × 10-51.2
AT3G16770'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '30 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
5.746 × 10-51.2
AT3G16770'35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar'compound, genotypeMicroarray designed to find PIN polarity regulators downstream of TIR1/AFB
Adjusted p-valueLog2-fold change
1.2668 × 10-4-1.2
AT3G16770'imidazolinone' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after treatment with imidazolinone
Adjusted p-valueLog2-fold change
3.0421 × 10-41.2
AT3G16770'rps2 mutant' vs 'wild type genotype' in 'none' at '0 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
5.6059 × 10-41.2
AT3G16770'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C'genotype, growth conditionExpression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants
Adjusted p-valueLog2-fold change
5.6437 × 10-4-1.2
AT3G16770'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
1.9531 × 10-31.2
AT3G16770'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
2.0679 × 10-31.2
AT3G16770'AT4G01050 knock out' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis TROL knock-out plants
Adjusted p-valueLog2-fold change
3.9773 × 10-3-1.2
AT3G16770'MKK9DD mutant' vs 'wild type' in 'none; control'compound, genotype, growth conditionTranscription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes
Adjusted p-valueLog2-fold change
4.5372 × 10-31.2
AT3G16770'hmr-5 null mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light
Adjusted p-valueLog2-fold change
1.0198 × 10-21.2
AT3G16770'arf7 arf19 double mutant' vs 'wild type' in 'Root Lateral Root Emergence Zone'genotype, organism partTranscription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19
Adjusted p-valueLog2-fold change
1.0346 × 10-21.2
AT3G16770'hydrogen peroxide; 20 millimolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
4.0834 × 10-22-1.1
AT3G16770'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-3'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
3.2134 × 10-19-1.1
AT3G16770'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.1127 × 10-19-1.1
AT3G16770'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
8.5499 × 10-19-1.1
AT3G16770'ref4-3' vs 'wild type genotype'genotypeGene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
Adjusted p-valueLog2-fold change
2.7785 × 10-12-1.1
AT3G16770'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
1.0803 × 10-11-1.1
AT3G16770'fry1-6 mutant' vs 'wild type' in 'grown on Linsmaier and Skoog media'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis fry1 and xrn single and double mutants
Adjusted p-valueLog2-fold change
3.8489 × 10-7-1.1
AT3G16770'swi3d mutant' vs 'wild type genotype'genotypeTranscript profiling of Arabidopsis thaliana swi3d mutant with inactivated SWI3D subunit of SWI/SNF complex
Adjusted p-valueLog2-fold change
1.2346 × 10-6-1.1
AT3G16770'sodium sulfide; des1' vs 'water; des1'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
6.8504 × 10-6-1.1
AT3G16770'arp6-1' vs 'wild type genotype'genotypeArabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq]
Adjusted p-valueLog2-fold change
8.1599 × 10-6-1.1
AT3G16770'spy-3 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis roots from spy-3 mutant to understand how SPY regulates root cortex proliferation
Adjusted p-valueLog2-fold change
1.3852 × 10-5-1.1
AT3G16770'ga1 muant and SCL3 overexpression' vs 'ga1 mutant'genotypeArabidopsis thaliana roots at 7DAG; ga1, ga1 scl3 (LOF) and ga1 SCL3 OE (GOF)
Adjusted p-valueLog2-fold change
2.1429 × 10-51.1
AT3G16770'MYB96 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants
Adjusted p-valueLog2-fold change
2.8755 × 10-5-1.1
AT3G16770'siz1-3' vs 'wild type' in 'control'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
4.803 × 10-51.1
AT3G16770'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
1.1517 × 10-4-1.1
AT3G16770'cycloheximide' vs 'mock'treatmentTranscription profiling of Arabidopsis WUSCHEL targets
Adjusted p-valueLog2-fold change
1.5934 × 10-4-1.1
AT3G16770'9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
3.0495 × 10-41.1
AT3G16770'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Sha'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.0588 × 10-4-1.1
AT3G16770'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'Sha'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.3743 × 10-4-1.1
AT3G16770'2 hr hypoxia' vs '2 hr control' in 'polysomal mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
9.2883 × 10-41.1
AT3G16770'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'ethanol; 2.5 percent; 12 days in LD + 1 day in constant light (LL)'compound, genotype, growth conditionGene expression from Inducible TOC1 expression in Arabidopsis seedlings
Adjusted p-valueLog2-fold change
1.2127 × 10-3-1.1
AT3G16770'T-DNA knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
3.4607 × 10-3-1.1
AT3G16770'fug1-3 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
4.2818 × 10-31.1
AT3G16770'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
5.4324 × 10-31.1
AT3G16770'gai mutant' vs 'wild type' in 'flg22' at '1 hour'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
8.9234 × 10-31.1
AT3G16770'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root stele'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
1.4236 × 10-21.1
AT3G16770'pnp1-1' vs 'wild type' in 'full nutrient medium' at '168 hour'genotype, growth condition, timeTranscription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation
Adjusted p-valueLog2-fold change
1.7846 × 10-21.1
AT3G16770'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
3.7573 × 10-21.1
AT3G16770'dde2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
3.8823 × 10-2-1.1
AT3G16770'5 day; naphthaleneacetic acid' vs '2 day; naphthaleneacetic acid' in 'stem tissue'growth condition, organism part, timeTranscription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid
Adjusted p-valueLog2-fold change
4.3139 × 10-2-1.1
AT3G16770'12 hour (dark)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
4.9594 × 10-2-1.1
AT3G16770'18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
1.1691 × 10-281
AT3G16770'bli-1 -/-; ire1b -/-' vs 'wild type genotype'genotypeBLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.5189 × 10-17-1
AT3G16770'cbe1 loss of function mutant' vs 'wild type genotype'genotypeDiscovery of a novel plant eIF4E-binding protein: Conserved Binding of eIF4E 1 (CBE1)
Adjusted p-valueLog2-fold change
8.9995 × 10-13-1
AT3G16770'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
7.7577 × 10-91
AT3G16770'pkl mutant; no compound' vs 'wild type; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
8.1904 × 10-9-1
AT3G16770'light pulse at ZT18' vs 'control'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing
Adjusted p-valueLog2-fold change
3.3626 × 10-61
AT3G16770'pkl mutant; uniconazole' vs 'wild_type; uniconazole'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
4.3369 × 10-6-1
AT3G16770'ANAC017 OEa' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
9.8341 × 10-6-1
AT3G16770'siz1-3' vs 'wild type' in 'drought'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
1.6893 × 10-5-1
AT3G16770'ethanol' at '4 hour' vs 'control' at '0 hour'compound, timeTranscription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol
Adjusted p-valueLog2-fold change
8.2841 × 10-5-1
AT3G16770'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type'genotype, infectTranscription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei
Adjusted p-valueLog2-fold change
1.0327 × 10-4-1
AT3G16770''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.254 × 10-41
AT3G16770'pvip1;pvip2' vs 'none'rnai, RNA interferenceTranscription profiling by array of Arabidopsis after RNAi-mediated knock-down of pvip1 and pvip2
Adjusted p-valueLog2-fold change
3.5088 × 10-41
AT3G16770'bru1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for bru1
Adjusted p-valueLog2-fold change
6.4038 × 10-41
AT3G16770'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day'compound, genotype, timeTranscription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid
Adjusted p-valueLog2-fold change
9.3325 × 10-41
AT3G16770'nhx5-2/nhx6-2 knock outs' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants
Adjusted p-valueLog2-fold change
1.3561 × 10-3-1
AT3G16770'se-2 loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
5.1354 × 10-3-1
AT3G16770'SIZ1' vs 'wild type genotype'genotypeTranscription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation
Adjusted p-valueLog2-fold change
5.4627 × 10-31
AT3G16770'apl mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls
Adjusted p-valueLog2-fold change
6.9968 × 10-31
AT3G16770'240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
7.1676 × 10-31
AT3G16770'nor1-1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
7.2864 × 10-3-1
AT3G16770'flg22; 100 nanomolar' vs 'none' in 'wild type genotype; 8 minute'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.1278 × 10-2-1
AT3G16770'5 min UV-A/B light pulse + 4 h darkness' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
1.1293 × 10-2-1
AT3G16770'SAB' vs 'wild type genotype'genotypeTranscription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation
Adjusted p-valueLog2-fold change
1.8731 × 10-21
AT3G16770'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.8807 × 10-2-1
AT3G16770'dehydration; 46T' vs 'dehydration; wild type'environmental stress, genotypeTranscription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis
Adjusted p-valueLog2-fold change
2.2568 × 10-2-1
AT3G16770'gpt2 T-DNA mutant' vs 'wild type genotype' in 'high light intensity' at '1 day'genotype, growth condition, timeAcclimation of photosynthesis to changes in the environment results decreases oxidative stress in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.5208 × 10-2-1
AT3G16770'eds16 mutant; Golovinomyces orontii infection' vs 'eds16 mutant; no infection' at 7 daygenotype, infect, timeTranscription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii
Adjusted p-valueLog2-fold change
2.6672 × 10-2-1
AT3G16770'hfr1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cry1 or hfr1
Adjusted p-valueLog2-fold change
2.9056 × 10-21
AT3G16770'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
4.3747 × 10-2-1
AT3G16770'glyphosate' vs 'control'growth conditionTranscription profiling by array of Arabidopsis treated with glyphosate herbicide