AT3G22640 (PAP85)

arabidopsis thaliana

Vicilin-like seed storage protein At3g22640

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
1.3258 × 10-28010.2
AT3G22640'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
4.6337 × 10-2889.7
AT3G22640'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
5.0792 × 10-449.7
AT3G22640'14 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
00
Log2-fold change
9.6
AT3G22640'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
00
Log2-fold change
9
AT3G22640'10 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
00
Log2-fold change
7.8
AT3G22640'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.0529 × 10-67.6
AT3G22640'phyABCDE quintuple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, lightTranscription profiling by array of Arabidopsis mutants lacking all phytochromes in response to red light exposure
Adjusted p-valueLog2-fold change
1.6591 × 10-247.5
AT3G22640'10 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.3052 × 10-6-7.3
AT3G22640'atbzip16; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'atbzip16; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
1.7869 × 10-76.7
AT3G22640'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.0638 × 10-56.5
AT3G22640'pkr2 pkl' vs 'wild type'genotypeTranscription profiling of Arabidopsis pickle mutants
Adjusted p-valueLog2-fold change
2.849 × 10-11-6.4
AT3G22640'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
5.449 × 10-5-6.4
AT3G22640'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
6.5094 × 10-2916.3
AT3G22640'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.5118 × 10-156.3
AT3G22640'7 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
9.1574 × 10-45.8
AT3G22640'phyABDE quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, lightTranscription profiling by array of Arabidopsis mutants lacking all phytochromes in response to red light exposure
Adjusted p-valueLog2-fold change
1.3658 × 10-75.6
AT3G22640'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
2.0917 × 10-85.5
AT3G22640'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.0213 × 10-95.3
AT3G22640'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
1.0863 × 10-95.1
AT3G22640'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
7.3341 × 10-95.1
AT3G22640'5 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.8006 × 10-65
AT3G22640'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.6526 × 10-54.9
AT3G22640'dcl1-15 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos
Adjusted p-valueLog2-fold change
1.5668 × 10-54.6
AT3G22640'pkl' vs 'wild type'genotypeTranscription profiling of Arabidopsis pickle mutants
Adjusted p-valueLog2-fold change
3.5191 × 10-10-4.5
AT3G22640'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
1.6079 × 10-8-4.5
AT3G22640'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.3967 × 10-694.4
AT3G22640'8 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
2.7991 × 10-20-4.4
AT3G22640'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
7.3716 × 10-4-4.4
AT3G22640'strigolactone GR24; 2.5 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidosis seeds after treatment with EL6 and GR24 to investigate the effect on germination
Adjusted p-valueLog2-fold change
8.2299 × 10-3-4.1
AT3G22640'long day length regimen' at '3 day' vs 'none' at '0 day'growth condition, timeAnalysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and an LRR protein that promotes flowering
Adjusted p-valueLog2-fold change
8.2678 × 10-84
AT3G22640'mdh mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for mdh
Adjusted p-valueLog2-fold change
2.2571 × 10-543.8
AT3G22640'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.1459 × 10-93.8
AT3G22640'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
6.5696 × 10-33.8
AT3G22640'gct-2' vs 'wild type'genotypeThe Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions.
Adjusted p-valueLog2-fold change
1.5262 × 10-103.7
AT3G22640'arr21c overexpressing line' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing arr21c
Adjusted p-valueLog2-fold change
7.2691 × 10-33.7
AT3G22640'35S::MIF1; dark' vs 'empty pRR2222 vector; dark'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
2.5867 × 10-23.7
AT3G22640'tcx2; WOX5:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
1.4518 × 10-123.5
AT3G22640'gul2-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
2.0593 × 10-63.5
AT3G22640'sucrose; 1 percent' vs 'none' in 'RBRcs mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
7.6786 × 10-33.5
AT3G22640'cct-1' vs 'wild type'genotypeThe Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions.
Adjusted p-valueLog2-fold change
1.0347 × 10-43.4
AT3G22640'SCO3-1 point mutation' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for sco3
Adjusted p-valueLog2-fold change
2.2945 × 10-393.3
AT3G22640'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.5068 × 10-4-3.3
AT3G22640'4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type'genotype, growth conditionGene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
Adjusted p-valueLog2-fold change
2.4194 × 10-2-3.3
AT3G22640'hfr1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cry1 or hfr1
Adjusted p-valueLog2-fold change
1.3896 × 10-7-3.2
AT3G22640'ANAC017 OEb' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
4.221 × 10-53.2
AT3G22640'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
8.6218 × 10-33.2
AT3G22640'abscisic acid; 20 micromolar' vs 'none' in 'endosperm'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.7289 × 10-14-3.1
AT3G22640'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
4.3303 × 10-7-3.1
AT3G22640'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
1.6259 × 10-2-3.1
AT3G22640'tor mutant' vs 'wild type' in 'none; 0 micromolar'compound, genotypeTranscription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose
Adjusted p-valueLog2-fold change
2.6039 × 10-113
AT3G22640'pkl mutant; uniconazole' vs 'wild_type; uniconazole'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
3.4285 × 10-822.9
PAP85'dja6; dja5 double mutant' vs 'wild type genotype'genotypeRNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.0353 × 10-112.9
AT3G22640'gul2-1 bri1-5 double mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
5.3722 × 10-6-2.9
AT3G22640'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.98 × 10-32.8
AT3G22640'spch' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
1.1629 × 10-2-2.8
AT3G22640'cry1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cry1 or hfr1
Adjusted p-valueLog2-fold change
3.9984 × 10-7-2.7
AT3G22640'AP1::AtIPT4 transgenic plant' vs 'wild type'genotypeTranscription profiling by array of young inflorescences of AP1∷AtIPT4 Arabidopsis thaliana transgenic plants to identify the candidate genes responsive to cytokinin
Adjusted p-valueLog2-fold change
6.9301 × 10-9-2.6
AT3G22640'tt2 mutant' vs 'wild type genotype'genotypeGene expression profiling by array of Arabidopsis tt2 mutant
Adjusted p-valueLog2-fold change
3.92 × 10-32.6
AT3G22640'5 micromolar gibberellin' vs 'water' at 30 minutegrowth condition, timeTranscription profiling by array of Arabidopsis expressing PcGA2ox1 after treatment with gibberellin
Adjusted p-valueLog2-fold change
2.7757 × 10-122.5
AT3G22640'pkl mutant; no compound' vs 'wild type; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
4.0276 × 10-52.5
AT3G22640'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
6.4937 × 10-72.4
AT3G22640'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
2.6418 × 10-42.4
AT3G22640'ga1-3 mutant' vs 'wild type' in 'seed'genotype, organism partTranscription profiling of Arabidopsis seed and flowers of ga1-3 mutant
Adjusted p-valueLog2-fold change
2.8877 × 10-22.4
AT3G22640'pvip1; pvip2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for pvip1 and pvip2
Adjusted p-valueLog2-fold change
2.9089 × 10-22.4
AT3G22640'siz1-3' vs 'wild type' in 'drought'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
4.1043 × 10-2-2.4
AT3G22640'ire1a/ire1b' vs 'wild type' in 'tunicamycin 5 milligram per liter'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ire1 after treatment with tunicamycin
Adjusted p-valueLog2-fold change
1.6112 × 10-3-2.3
AT3G22640'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
2.867 × 10-3-2.3
AT3G22640'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
1.1817 × 10-22.3
AT3G22640'RNAi knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
3.0688 × 10-7-2.2
AT3G22640'gia3 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for gia3
Adjusted p-valueLog2-fold change
2.4217 × 10-62.2
AT3G22640'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
2.7837 × 10-32.2
AT3G22640'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
4.0727 × 10-3-2.2
AT3G22640'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
9.6034 × 10-32.2
AT3G22640'AGL15 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis
Adjusted p-valueLog2-fold change
4.4716 × 10-22.2
AT3G22640'35S::MIF1; dark' vs '35S::MIF1; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.9762 × 10-8-2.1
AT3G22640'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
9.6791 × 10-4-2.1
AT3G22640'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.8221 × 10-22.1
AT3G22640'rts1-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for rts1
Adjusted p-valueLog2-fold change
1.2355 × 10-52
AT3G22640'hmr-5 null mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light
Adjusted p-valueLog2-fold change
4.1187 × 10-32
AT3G22640'csn4-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
6.1496 × 10-61.9
AT3G22640'pp7l-1 loss of function mutant' vs 'wild type genotype'genotypeSERINE/THREONINE-PROTEIN PHOSPHATASE7-LIKE PP7L Regulates Chloroplast Development
Adjusted p-valueLog2-fold change
2.0965 × 10-51.9
AT3G22640'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
9.253 × 10-51.9
AT3G22640'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
7.3791 × 10-4-1.9
AT3G22640'3% glucose' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
1.23 × 10-3-1.9
AT3G22640'brm-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
2.8529 × 10-2-1.9
AT3G22640'chemical EL6; 2.5 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidosis seeds after treatment with EL6 and GR24 to investigate the effect on germination
Adjusted p-valueLog2-fold change
2.0191 × 10-71.8
AT3G22640'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
6.7132 × 10-61.8
AT3G22640'pif1pif3pif4pif5 (pifq) mutant; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' vs 'wild type; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
1.0147 × 10-5-1.8
AT3G22640'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
1.3253 × 10-21.8
AT3G22640'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.0476 × 10-21.8
AT3G22640'Gibberellin' vs 'no compound' in 'gid1a-1 gid1b-1 gid1c-2 mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for gid1a, gid1b and gid1c or for ga-1 after treatment with Gibberellin (GA3)
Adjusted p-valueLog2-fold change
2.9896 × 10-21.8
AT3G22640'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.8077 × 10-51.7
AT3G22640'hda6 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
7.1209 × 10-4-1.7
AT3G22640'dexamethasone; 10 micromolar' vs 'none' in 'dark'compound, growth conditionExpression data from Arabidopsis thaliana under dark and far-red light
Adjusted p-valueLog2-fold change
2.6481 × 10-31.7
AT3G22640'3% mannitol' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
3.4262 × 10-3-1.7
AT3G22640'ga1-3, brm-1 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
2.8677 × 10-21.7
AT3G22640'dexamethasone; 10 micromolar' vs 'none'compoundGenome-wide analysis of genes regulated by ARR22 overexpression.
Adjusted p-valueLog2-fold change
8.4422 × 10-9-1.6
AT3G22640'hos1-3 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis hos1-3 seedlings
Adjusted p-valueLog2-fold change
6.8072 × 10-4-1.6
AT3G22640'fus3-3 mutant' vs 'wild type' in '8 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
2.6527 × 10-31.6
AT3G22640'rsa1-1 mutant' vs 'wild type' in 'sodium chloride; 120 millimolar' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
8.2628 × 10-31.6
AT3G22640'Ler x C24 F1 hybrid' vs 'C24 ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
2.8564 × 10-2-1.6
AT3G22640'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
6.1158 × 10-8-1.5
AT3G22640'35S:GFP-FHY1; fhy1-1 transgenic line' vs 'fhy1-1 mutant'genotypeTranscription profiling by high throughput sequencing of Arabidopsis 35S:GFP-FHY1; fhy1-1 transgenic line compared to fhy1-1 mutant
Adjusted p-valueLog2-fold change
1.1669 × 10-7-1.5
AT3G22640'seed germinating in continuous light 6 h SL' vs 'seed germinating in continuous light 1 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
7.7048 × 10-61.5
AT3G22640'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
1.1787 × 10-31.5
AT3G22640'RBRcs mutant' vs 'wild type' in 'none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
2.0223 × 10-31.5
AT3G22640'bli-1 -/-' vs 'wild type genotype'genotypeBLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3429 × 10-3-1.5
AT3G22640'3% glucose' at '2 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
8.3999 × 10-3-1.5
AT3G22640'nano-titania; 500 milligram per liter' vs 'potassium chloride; 0.1 molar'compoundExpression data from 12-day old Arabidopsis germinants
Adjusted p-valueLog2-fold change
1.3247 × 10-21.5
AT3G22640'mbd11 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.2371 × 10-21.5
AT3G22640'35S::MIF1; light' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
6.8677 × 10-9-1.4
AT3G22640'pkl mutant; uniconazole' vs 'pkl mutant; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
1.0169 × 10-6-1.4
AT3G22640'fpa-7 loss of function mutant' vs 'wild type genotype'genotypeGene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis thaliana seedlings
Adjusted p-valueLog2-fold change
8.0024 × 10-41.4
AT3G22640'ga1-3 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
1.6698 × 10-3-1.4
AT3G22640'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
1.174 × 10-21.4
AT3G22640'shl-2' vs 'wild type'genotypeExpression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in short day conditions
Adjusted p-valueLog2-fold change
2.9673 × 10-2-1.4
AT3G22640'light pulse in the middle of the day' vs 'day time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
2.4836 × 10-51.3
AT3G22640'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '1 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '1 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
1.0913 × 10-3-1.3
AT3G22640'lsm5 sad1 double mutant' vs 'wild type' in 'C24'ecotype, genotypeTranscription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants
Adjusted p-valueLog2-fold change
5.4537 × 10-31.3
AT3G22640'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Fei-0'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
2.2813 × 10-2-1.3
AT3G22640'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
3.5902 × 10-21.3
AT3G22640'AB' vs 'wild type genotype'genotypeTranscription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation
Adjusted p-valueLog2-fold change
2.1654 × 10-4-1.2
AT3G22640'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
9.1133 × 10-41.2
AT3G22640'frb1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for frb1
Adjusted p-valueLog2-fold change
4.8653 × 10-3-1.2
AT3G22640'hog1-7 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis polyploidy-associated transcriptional gene silencing (paTGS) mutants ddm1-12 and hog1-7 against wild type controls
Adjusted p-valueLog2-fold change
1.7484 × 10-2-1.2
AT3G22640'dehydration; 46T' vs 'none; 46T'environmental stress, genotypeTranscription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis
Adjusted p-valueLog2-fold change
2.3184 × 10-21.2
AT3G22640'AtGATA2ox transgenic' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1
Adjusted p-valueLog2-fold change
9.6492 × 10-3-1.1
AT3G22640'pil5-1' vs 'wild type' in 'far-red light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pil5 after exposure to red and far-red light or far-red light only
Adjusted p-valueLog2-fold change
3.3841 × 10-2-1.1
AT3G22640'full floral stage 9 to 12; ino-1' vs 'full floral stage 9 to 12; wild type'developmental stage, genotypeTranscription profiling of pistils from Arabidopsis wild type, ant-4 mutant and ino-1mutant plants at different developmental stages
Adjusted p-valueLog2-fold change
4.1711 × 10-21.1
AT3G22640'gpt2 T-DNA mutant' vs 'wild type genotype' in 'high light intensity' at '1 day'genotype, growth condition, timeAcclimation of photosynthesis to changes in the environment results decreases oxidative stress in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.9002 × 10-6-1
AT3G22640'lec1-1 mutant' vs 'wild type' in '8 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
1.2056 × 10-41
AT3G22640'double mutant at3g03940/at518190 knockdown' vs 'wild type'genotypeOsmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression]
Adjusted p-valueLog2-fold change
1.6808 × 10-4-1
AT3G22640'high red light:far-red light ratio' vs 'low red light:far-red light ratio' in 'third from topmost bud (bud n-2)'light, sampling siteTranscriptomics of Axillary Bud Outgrowth Regulation by Shade Signals in Arabidopsis
Adjusted p-valueLog2-fold change
3.9676 × 10-2-1
AT3G22640'hda9 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
4.7771 × 10-21
AT3G22640'EBS' vs 'wild type'genotypeExpression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in short day conditions
Synonym
MWI23.1, At3g22640
Gene ontology
Plant ontology
InterPro
Ensembl gene
Ensembl transcript
Ensembl protein
Entrez
UniProt
Gene biotype
Design element
258327_at