AT3G28270

arabidopsis thaliana

UPF0496 protein At3g28270

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
2.403 × 10-77.6
AT3G28270'rhd6 WER::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
2.5858 × 10-155.5
AT3G28270'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
3.0718 × 10-55
AT3G28270'low water potential stress' vs 'control' in 'hai1-2 mutant'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
1.6625 × 10-34.9
AT3G28270'phosphate deprivation' vs 'control' in 'wild type genotype; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
1.1862 × 10-84.7
AT3G28270'T-DNA knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
6.4117 × 10-5-4.7
AT3G28270'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
1.5232 × 10-4-4.7
AT3G28270'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
1.8184 × 10-44.7
AT3G28270'low water potential stress' vs 'control' in 'wild type'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
2.5188 × 10-5-4.6
AT3G28270'Agrobacterium tumefaciens C58' vs 'none'infectTranscription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development
Adjusted p-valueLog2-fold change
1.3191 × 10-24.6
AT3G28270'drought; abi1td' at '0 hour' vs 'control; abi1td' at '0 hour'environmental stress, genotype, timeTranscription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling
Adjusted p-valueLog2-fold change
5.5696 × 10-124.5
AT3G28270'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
3.8985 × 10-44.5
AT3G28270'light pulse in the middle of the day' vs 'day time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
7.9802 × 10-2124.3
AT3G28270'ref8-1 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants
Adjusted p-valueLog2-fold change
2.5915 × 10-94.3
AT3G28270'lec2-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
2.8603 × 10-3-4.3
AT3G28270'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
1.2889 × 10-8-4.2
AT3G28270'siz1-3' vs 'wild type' in 'drought'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
5.3854 × 10-54.2
AT3G28270'arr22-ox' vs 'wild type' in 'none'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.5216 × 10-44.2
AT3G28270'water deprivation' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after water deprivation
Adjusted p-valueLog2-fold change
6.3881 × 10-4-4.1
AT3G28270'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.7753 × 10-124
AT3G28270'water; des1' vs 'water; wild type'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
2.9615 × 10-7-4
AT3G28270'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
3.4151 × 10-64
AT3G28270'homozygous AtCesA4' vs 'heterozygous AtCesA4'genotypeTranscription profiling by array of Arabidopsis cellulose synthase mutants
Adjusted p-valueLog2-fold change
9.8565 × 10-6-4
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Coimbra'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
6.5557 × 10-3-4
AT3G28270'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
1.1452 × 10-24
AT3G28270'rps2 mutant' vs 'wild type genotype' in 'Pseudomonas syringae pv. maculicola carrying AvrRpt2' at '10 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.3746 × 10-194-3.9
AT3G28270'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.3626 × 10-503.8
AT3G28270'35S:LSD1-GFP' vs 'wild type genotype' in 'none'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.8522 × 10-293.8
AT3G28270'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.0204 × 10-13-3.8
AT3G28270'ozone; 350 nanoliter' vs 'none' in 'Cvi-0'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
5.7359 × 10-43.8
AT3G28270'methyl jasmonate 0.1 micromolar' vs 'none' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for myc2 after treatment with methyl jasmonate
Adjusted p-valueLog2-fold change
2.4792 × 10-117-3.7
AT3G28270'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.1509 × 10-103.7
AT3G28270'lec1-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
00
Log2-fold change
3.6
AT3G28270'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
5.3276 × 10-18-3.6
AT3G28270'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
6.4173 × 10-113.6
AT3G28270'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.6102 × 10-4-3.6
AT3G28270'mkk1;mkk2 knockout; none' vs 'wild_type; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH
Adjusted p-valueLog2-fold change
2.4405 × 10-643.5
AT3G28270'mannitol; 300 millimolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
2.0858 × 10-263.5
AT3G28270'salt and heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
9.2525 × 10-6-3.5
AT3G28270'abi4-102' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
00
Log2-fold change
3.4
AT3G28270'light pulse at ZT18' vs 'control'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing
Adjusted p-valueLog2-fold change
2.0194 × 10-10-3.4
AT3G28270'low light; DBMIB; 24 micromolar; 0.5 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
2.7559 × 10-93.4
AT3G28270'swp73b-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis swp73b-1 mutant
Adjusted p-valueLog2-fold change
1.0321 × 10-83.4
AT3G28270'swi3d mutant' vs 'wild type genotype'genotypeTranscript profiling of Arabidopsis thaliana swi3d mutant with inactivated SWI3D subunit of SWI/SNF complex
Adjusted p-valueLog2-fold change
8.3882 × 10-34-3.3
AT3G28270'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
7.1028 × 10-103.3
AT3G28270'sodium sulfide; wild type' vs 'water; wild type'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
5.2229 × 10-7-3.3
AT3G28270'low light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
9.353 × 10-6-3.3
AT3G28270'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar'compoundTranscription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
Adjusted p-valueLog2-fold change
2.2846 × 10-53.3
AT3G28270'jasmonic acid; high red/far-red ratio' vs 'mock; high red/far-red ratio'compound, treatmentExpression data from low Red:Far-Red ratio and Jasmonic Acid crosstalk in Arabidopsis
Adjusted p-valueLog2-fold change
7.9364 × 10-53.3
AT3G28270'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
8.7196 × 10-4-3.3
AT3G28270'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
3.6588 × 10-983.2
AT3G28270'Ler x C24 F1 hybrid' vs 'Landsberg erecta ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
1.1833 × 10-663.2
AT3G28270'heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
2.7736 × 10-6-3.2
AT3G28270'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
3.7573 × 10-53.2
AT3G28270'methyl jasmonate 0.1 micromolar' vs 'none' in 'jin1-9'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for myc2 after treatment with methyl jasmonate
Adjusted p-valueLog2-fold change
3.3627 × 10-4-3.2
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
1.2595 × 10-33.2
AT3G28270'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
1.1518 × 10-187-3.1
AT3G28270'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
5.1224 × 10-833.1
AT3G28270'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
4.9246 × 10-10-3.1
AT3G28270'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
5.7853 × 10-73.1
AT3G28270'RNAi knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
4.1516 × 10-53.1
AT3G28270'jasmonic acid; low red/far-red ratio' vs 'mock; low red/far-red ratio'compound, treatmentExpression data from low Red:Far-Red ratio and Jasmonic Acid crosstalk in Arabidopsis
Adjusted p-valueLog2-fold change
9.2737 × 10-53.1
AT3G28270'light pulse in the middle of the night' vs 'night time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
1.543 × 10-14-3
AT3G28270'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control'genotype, treatmentQuantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.975 × 10-8-3
AT3G28270'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
1.0354 × 10-53
AT3G28270'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
2.3845 × 10-33
AT3G28270'water deprivation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation
Adjusted p-valueLog2-fold change
1.1452 × 10-2-3
AT3G28270'pdx1.3 knockout' vs 'wild type' in 'leaf'genotype, organism partExpression data from WT Col-0 and the pdx1.3 ko mutant of Arabidopsis
Adjusted p-valueLog2-fold change
1.4455 × 10-2-3
AT3G28270'Cax1/Cax3 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis cax1/cax3 double mutants
Adjusted p-valueLog2-fold change
3.9652 × 10-23
AT3G28270'14 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.4794 × 10-172.9
AT3G28270'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
5.0641 × 10-8-2.9
AT3G28270'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
6.1123 × 10-32.9
AT3G28270'dehydration stress' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
6.2735 × 10-512.8
AT3G28270'clf28 mutant' vs 'wild type' in 'shoot'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
3.3033 × 10-6-2.8
AT3G28270'ozone; 350 nanoliter' vs 'none' in 'Shahdara'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
6.0766 × 10-6-2.8
AT3G28270'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
7.6343 × 10-52.8
AT3G28270'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'wild type' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
1.4104 × 10-4-2.8
AT3G28270'AT4G01050 knock out' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis TROL knock-out plants
Adjusted p-valueLog2-fold change
4.8667 × 10-3-2.8
AT3G28270'abi4 vtc2' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
Adjusted p-valueLog2-fold change
1.1501 × 10-2-2.8
AT3G28270'srk2dei triple mutant' vs 'wild type' in 'dehydration stress'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
3.207 × 10-52-2.7
AT3G28270'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.7967 × 10-6-2.7
AT3G28270'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance
Adjusted p-valueLog2-fold change
6.3713 × 10-52.7
AT3G28270'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
6.6473 × 10-4-2.7
AT3G28270'mkk1 knockout; none' vs 'wild_type; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH
Adjusted p-valueLog2-fold change
1.2605 × 10-32.7
AT3G28270'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
3.9574 × 10-3-2.7
AT3G28270'35S::MIF1; dark' vs '35S::MIF1; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
9.9291 × 10-3-2.7
AT3G28270'Pseudomonas syringae DC3000hrpA' vs 'control' in '12 hour'age, growth conditionTranscription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae
Adjusted p-valueLog2-fold change
1.7318 × 10-2-2.7
AT3G28270'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
4.8382 × 10-14-2.6
AT3G28270'phyA-1 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis phyA-1 mutants
Adjusted p-valueLog2-fold change
2.9111 × 10-132.6
AT3G28270'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
2.3858 × 10-112.6
AT3G28270'lyk4/5' vs 'wild type genotype' in 'CO8; 1 millimolar' at '30 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
5.7833 × 10-62.6
AT3G28270'2 hour; excess light' vs '0 hour; low light' in 'wild type'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
1.9131 × 10-5-2.6
AT3G28270'hen1 mutant' vs 'wild type' in 'Ler'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6
Adjusted p-valueLog2-fold change
1.0559 × 10-42.6
AT3G28270'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
5.408 × 10-4-2.6
AT3G28270'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
4.0137 × 10-3-2.6
AT3G28270'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
3.9489 × 10-22.6
AT3G28270'drought; wild type' at '0 hour' vs 'control; wild type' at '0 hour'environmental stress, genotype, timeTranscription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling
Adjusted p-valueLog2-fold change
4.0743 × 10-31-2.5
AT3G28270'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.1052 × 10-10-2.5
AT3G28270'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
2.3374 × 10-6-2.5
AT3G28270'hda6 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
3.052 × 10-5-2.5
AT3G28270'atx1-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for atx1
Adjusted p-valueLog2-fold change
1.3819 × 10-4-2.5
AT3G28270'350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
9.27 × 10-4-2.5
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
4.5797 × 10-3-2.5
AT3G28270'far-red light pulse followed by darkness' vs 'constant white light' in 'petiole'growth condition, organism partTranscription profiling by array of Arabidopsis subjected to far-red light pulse treatment
Adjusted p-valueLog2-fold change
5.179 × 10-3-2.5
AT3G28270'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
6.7416 × 10-152.4
AT3G28270'drought environment' vs 'none' in 'wild type genotype'environmental stress, genotypeTranscriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment)
Adjusted p-valueLog2-fold change
1.5723 × 10-13-2.4
AT3G28270'hda5 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
1.7059 × 10-72.4
AT3G28270'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.986 × 10-72.4
AT3G28270'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.7103 × 10-6-2.4
AT3G28270'mbd6 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.861 × 10-5-2.4
AT3G28270'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar'compoundTranscription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
Adjusted p-valueLog2-fold change
2.1623 × 10-5-2.4
AT3G28270'1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '3 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
2.2432 × 10-32.4
AT3G28270'c3h14c3h15 double mutant' vs 'wild type'genotypeExpression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type
Adjusted p-valueLog2-fold change
4.0411 × 10-32.4
AT3G28270'nor1-1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
7.9059 × 10-32.4
AT3G28270'18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
6.6104 × 10-102.3
AT3G28270'arr22-ox' vs 'wild type' in 't-zeatin'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.2821 × 10-7-2.3
AT3G28270'glu1-2 mutant' vs 'wild type' in 'rosette leaf'genotype, organism partTranscription profiling by array of Arabidopsis mutant for Fd-GOGAT1/GLU1
Adjusted p-valueLog2-fold change
4.7964 × 10-52.3
AT3G28270'er-2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis developing inflorescence tips from er-2 mutant and epfl4, epfl6 double mutant
Adjusted p-valueLog2-fold change
5.9278 × 10-52.3
AT3G28270'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
7.7772 × 10-5-2.3
AT3G28270'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
2.4159 × 10-4-2.3
AT3G28270'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type'genotypeTranscriptome profiling of LecRKVI.2 over-expressor plants.
Adjusted p-valueLog2-fold change
5.3713 × 10-42.3
AT3G28270'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
7.814 × 10-4-2.3
AT3G28270'Pseudomonas syringae ES4326' vs 'none' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
7.8174 × 10-4-2.3
AT3G28270'msh1 albino mutant' vs 'wild type'genotypeTranscript profiling of Arabidopsis albino msh1 mutants
Adjusted p-valueLog2-fold change
1.6345 × 10-32.3
AT3G28270'sucrose; 1 percent' vs 'none' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.8578 × 10-3-2.3
AT3G28270'wild type; 16 degree celsius' vs 'wild type; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
9.2179 × 10-3-2.3
AT3G28270'ADEK1 calpain overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing DEK1 calpain
Adjusted p-valueLog2-fold change
7.134 × 10-822.2
AT3G28270'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.0124 × 10-82.2
AT3G28270'DEWAX2 overexpression' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems
Adjusted p-valueLog2-fold change
2.0326 × 10-8-2.2
AT3G28270'350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
2.1031 × 10-82.2
AT3G28270'ethanol' at '4 hour' vs 'control' at '0 hour'compound, timeTranscription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol
Adjusted p-valueLog2-fold change
1.1616 × 10-52.2
AT3G28270'T-DNA knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
1.2094 × 10-32.2
AT3G28270'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T8”)'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation
Adjusted p-valueLog2-fold change
1.5857 × 10-32.2
AT3G28270'Piereis brassicae; larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
2.4753 × 10-3-2.2
AT3G28270'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.4491 × 10-2-2.2
AT3G28270'E2Fa-DPa overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing E2Fa-Dpa
Adjusted p-valueLog2-fold change
4.9762 × 10-2-2.2
AT3G28270'ga1-3 gai-t6 rga-t2 rgl1-1 rgl2-1' vs 'wild type' in 'flg22'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
2.102 × 10-12-2.1
AT3G28270'350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
1.3213 × 10-52.1
AT3G28270'bru1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for bru1
Adjusted p-valueLog2-fold change
5.4773 × 10-5-2.1
AT3G28270'scrm-D;mute' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
2.4854 × 10-4-2.1
AT3G28270'dcl1-7 mutant' vs 'wild type' in 'Ler'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6
Adjusted p-valueLog2-fold change
2.6374 × 10-4-2.1
AT3G28270'GVGdvl4' vs 'control' in 'dexamethasone'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone
Adjusted p-valueLog2-fold change
4.962 × 10-32.1
AT3G28270'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.1326 × 10-22.1
AT3G28270'dehydration; wild type' vs 'none; wild type'environmental stress, genotypeTranscription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis
Adjusted p-valueLog2-fold change
1.4592 × 10-22.1
AT3G28270'Cal-0' vs 'Col-4'ecotypeTranscription profiling by array of Arabidopsis Col-4 and Cal-0 ecotypes
Adjusted p-valueLog2-fold change
2.0921 × 10-2-2.1
AT3G28270'mkk2 knockout; none' vs 'wild_type; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH
Adjusted p-valueLog2-fold change
2.1175 × 10-7-2
AT3G28270'Mir-0 x Se-0' vs 'Se-0'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
1.6294 × 10-6-2
AT3G28270''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.3188 × 10-5-2
AT3G28270'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
1.5106 × 10-5-2
AT3G28270'dexamethasone' vs 'no compound' in 'GVGdvl4'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone
Adjusted p-valueLog2-fold change
2.27 × 10-52
AT3G28270'inducible 35S:LOB-GR line' vs 'wild type' in 'none'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.6023 × 10-5-2
AT3G28270'siz1-3' vs 'wild type' in 'control'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
5.7064 × 10-4-2
AT3G28270'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
2.7151 × 10-3-2
AT3G28270'Pseudomonas syringae DC3000' vs 'control' in '12 hour'age, growth conditionTranscription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae
Adjusted p-valueLog2-fold change
1.1682 × 10-2-2
AT3G28270'syringolin; 20 micromolar' vs 'none' in 'powdery mildew infected' at '8 to 12 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
1.1998 × 10-2-2
AT3G28270'ADEK1 calpian null' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing DEK1 calpain
Adjusted p-valueLog2-fold change
1.9436 × 10-22
AT3G28270'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T6”)'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation
Adjusted p-valueLog2-fold change
4.7307 × 10-93-1.9
AT3G28270'estradiol; 10 micromolar' vs 'none'compoundDirect role of MUTE in cell state switch and symmetric cell division to create stomata
Adjusted p-valueLog2-fold change
1.0642 × 10-6-1.9
AT3G28270'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'none; ; atpao5-3 mutant'compound, genotypeTranscription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride
Adjusted p-valueLog2-fold change
1.37 × 10-61.9
AT3G28270'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
6.4919 × 10-6-1.9
AT3G28270'KZ-10 x Mrk-0' vs 'KZ-10'ecotypeTranscription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents
Adjusted p-valueLog2-fold change
9.8171 × 10-61.9
AT3G28270'0.5 hour; excess light' vs '0 hour; low light' in 'wild type'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
1.3261 × 10-5-1.9
AT3G28270'350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
3.4579 × 10-5-1.9
AT3G28270'ANAC017 OEb' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.1169 × 10-41.9
AT3G28270'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
4.995 × 10-4-1.9
AT3G28270'vtc2' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
Adjusted p-valueLog2-fold change
9.4288 × 10-41.9
AT3G28270'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'leaf'growth condition, organism partTranscriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis
Adjusted p-valueLog2-fold change
1.6301 × 10-3-1.9
AT3G28270'350 ppb ozone exposure for 2hr' vs 'none' in 'wild type'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
3.8389 × 10-31.9
AT3G28270'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.2522 × 10-2-1.9
AT3G28270'wild_type; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'wild_type; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH
Adjusted p-valueLog2-fold change
1.2922 × 10-2-1.9
AT3G28270'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
1.6088 × 10-21.9
AT3G28270'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
2.1134 × 10-2-1.9
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Tenela'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
2.066 × 10-831.8
AT3G28270'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3591 × 10-17-1.8
AT3G28270'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.3415 × 10-9-1.8
AT3G28270'excess light; none; 0.5 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
7.2999 × 10-71.8
AT3G28270'drought environment' vs 'none' in 'ahl10-1'environmental stress, genotypeTranscriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment)
Adjusted p-valueLog2-fold change
5.0914 × 10-6-1.8
AT3G28270'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
1.4595 × 10-41.8
AT3G28270'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.6228 × 10-31.8
AT3G28270'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
3.8576 × 10-3-1.8
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Rschew'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
3.9833 × 10-31.8
AT3G28270'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
5.2465 × 10-3-1.8
AT3G28270'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
6.1777 × 10-31.8
AT3G28270'dehydration; 46T' vs 'none; 46T'environmental stress, genotypeTranscription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis
Adjusted p-valueLog2-fold change
1.1133 × 10-21.8
AT3G28270'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.2503 × 10-2-1.8
AT3G28270'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.5913 × 10-2-1.8
AT3G28270'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour'ecotype, environmental stress, timeTranscription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation
Adjusted p-valueLog2-fold change
4.8662 × 10-21.8
AT3G28270'35S::amiRAP2.2-12' vs 'wild type' in 'aerobic'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing RAP2.12 or with RAP2.12 and RAP2.2 silenced after growth in hypoxic conditions
Adjusted p-valueLog2-fold change
7.7411 × 10-291.7
AT3G28270'sfr6-2' vs 'wild type genotype'genotypeGene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
Adjusted p-valueLog2-fold change
6.7223 × 10-161.7
AT3G28270'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3072 × 10-13-1.7
AT3G28270'pdx3-3 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants
Adjusted p-valueLog2-fold change
2.7026 × 10-61.7
AT3G28270'abscisic acid; 50 micromolar' vs 'mock' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
6.5057 × 10-6-1.7
AT3G28270'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day'genotype, timeTranscription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture.
Adjusted p-valueLog2-fold change
2.3067 × 10-31.7
AT3G28270'fpgs1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidiopsis inflorescence stems from fpgs1 mutants
Adjusted p-valueLog2-fold change
1.2046 × 10-2-1.7
AT3G28270'flg22' vs 'water' at '3 hour'compound, timeTranscription profiling by array of Arabidopsis after treatment with oligogalacturonides
Adjusted p-valueLog2-fold change
2.9419 × 10-21.7
AT3G28270"rps10 RNAi; early onset of silencing (P2)" vs "none; wild type"RNA interference, phenotypeMicroarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein
Adjusted p-valueLog2-fold change
1.2091 × 10-38-1.6
AT3G28270'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
4.4275 × 10-171.6
AT3G28270'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.2122 × 10-101.6
AT3G28270'ref4-3' vs 'wild type genotype'genotypeGene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof
Adjusted p-valueLog2-fold change
7.6999 × 10-101.6
AT3G28270'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day'growth condition, infect, sampling time pointLeaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
Adjusted p-valueLog2-fold change
9.5586 × 10-10-1.6
AT3G28270'wild type; Botrytis cinerea 2100' vs 'wild type; mock'genotype, infectWRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
Adjusted p-valueLog2-fold change
2.5336 × 10-61.6
AT3G28270'wild type; UV-B light regimen (345 nm); 6 hour; 305nm' vs 'wild type; UV-B light regimen (345 nm); control'genotype, light, time, treatmentTranscription profiling of Arabodpsis seedings exposed to UV-B irradiation
Adjusted p-valueLog2-fold change
7.8232 × 10-61.6
AT3G28270'from low light to high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.0702 × 10-51.6
AT3G28270'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Kas-1' ecotypeecotype, organism part, growth condition, timeTranscription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium
Adjusted p-valueLog2-fold change
2.3425 × 10-5-1.6
AT3G28270'Bla-1 x Hh-0' vs 'Hh-0'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
5.6423 × 10-5-1.6
AT3G28270'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
2.0907 × 10-41.6
AT3G28270'RNAi knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
7.2097 × 10-41.6
AT3G28270'synthetic strigolactone GR24 10 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidopsis thaliana seedlings treated with CTL-VI or GR24
Adjusted p-valueLog2-fold change
1.2626 × 10-3-1.6
AT3G28270'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
1.4826 × 10-3-1.6
AT3G28270'8 hour (light)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
2.3212 × 10-3-1.6
AT3G28270'beta-estradiol 5 micromolar' vs 'water' at 12hcompound, timeTranscription profiling by array of Arabidopsis with RNAi-mediated knockdown of RBR after treatment with beta estradiol
Adjusted p-valueLog2-fold change
3.0044 × 10-3-1.6
AT3G28270'atprmt5 mutant' vs 'wild type genotype'genotypeAtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq
Adjusted p-valueLog2-fold change
5.4888 × 10-31.6
AT3G28270'1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '0 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
1.4245 × 10-21.6
AT3G28270'hda9-1 mutant' vs 'wild type'genotypeComparison of histone deacetylase 9-1 mutant (SALK_001723) dry seed transcriptome with Col wild-type
Adjusted p-valueLog2-fold change
2.5794 × 10-2-1.6
AT3G28270'tor mutant' vs 'wild type' in 'none; 0 micromolar'compound, genotypeTranscription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose
Adjusted p-valueLog2-fold change
3.0795 × 10-2-1.6
AT3G28270'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
3.752 × 10-2-1.6
AT3G28270'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control'genotype, treatmentQuantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.4707 × 10-25-1.5
AT3G28270'warm/hot temperature regimen' vs 'none' in '35S:HSFA1b-RFP'environmental stress, genotypeGenome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq]
Adjusted p-valueLog2-fold change
9.0081 × 10-22-1.5
AT3G28270'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
3.2827 × 10-181.5
AT3G28270'35S:HSFA1b-RFP' vs 'wild type genotype' in 'none'environmental stress, genotypeGenome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq]
Adjusted p-valueLog2-fold change
5.7793 × 10-14-1.5
AT3G28270'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock'genotype, infectWRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
Adjusted p-valueLog2-fold change
4.9266 × 10-9-1.5
AT3G28270'pdx3-4 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants
Adjusted p-valueLog2-fold change
1.0826 × 10-8-1.5
AT3G28270'TaRZ1 overexpressing line' vs 'wild type'genotypeGene expression profile in wheat TaRZ1-expressing Arabidopsis plant
Adjusted p-valueLog2-fold change
1.9866 × 10-8-1.5
AT3G28270'tunicamycin; 5 microgram per milliliter' vs 'none' in 'bzip17 -/- ; bzip28 -/-'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
3.2768 × 10-71.5
AT3G28270'mCherry-RAX1-GR' vs 'mCherry-GR' in 'dexamethasone; 10 micromolar'compound, genotypeRNA-seq of Arabidopsis 14 day-old seedlings expressing either mCherry-RAX1-GR or mCherry-GR with 4h mock vs. dexamethasone treatment
Adjusted p-valueLog2-fold change
5.1133 × 10-71.5
AT3G28270'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
2.1644 × 10-6-1.5
AT3G28270'rlt1-1 rlt2-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis rlt1-1 rlt2-1 mutants
Adjusted p-valueLog2-fold change
7.2149 × 10-6-1.5
AT3G28270'Bla-1 x Hh-0' vs 'Bla-1'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
2.4765 × 10-51.5
AT3G28270'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
1.931 × 10-4-1.5
AT3G28270'ANAC017 OEa' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.9547 × 10-41.5
AT3G28270'epfl4, epfl6 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis developing inflorescence tips from er-2 mutant and epfl4, epfl6 double mutant
Adjusted p-valueLog2-fold change
3.8506 × 10-4-1.5
AT3G28270'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1'genotype, infectTranscription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei
Adjusted p-valueLog2-fold change
4.1439 × 10-41.5
AT3G28270'Plasmodiophora brassicae' vs 'none' at '23 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.9267 × 10-4-1.5
AT3G28270'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
1.1309 × 10-3-1.5
AT3G28270'triazolopyrimidine' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after treatment with triazolopyrimidine
Adjusted p-valueLog2-fold change
1.6049 × 10-31.5
AT3G28270'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
4.9481 × 10-3-1.5
AT3G28270'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C'genotype, growth conditionExpression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants
Adjusted p-valueLog2-fold change
5.2859 × 10-3-1.5
AT3G28270'3% glucose' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
1.2959 × 10-2-1.5
AT3G28270'4 degree celsius' vs '20 degree celsius' in 'Columbia-0'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
1.3413 × 10-2-1.5
AT3G28270'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.6755 × 10-21.5
AT3G28270'none; atpao5-3 mutant' vs 'none; wild type genotype'compound, genotypeTranscription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride
Adjusted p-valueLog2-fold change
1.4119 × 10-61.4
AT3G28270'35S:GFP-FHY1; fhy1-1 transgenic line' vs 'fhy1-1 mutant'genotypeTranscription profiling by high throughput sequencing of Arabidopsis 35S:GFP-FHY1; fhy1-1 transgenic line compared to fhy1-1 mutant
Adjusted p-valueLog2-fold change
1.221 × 10-51.4
AT3G28270'lyk4/5' vs 'wild type genotype' in 'CO8; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
2.3276 × 10-5-1.4
AT3G28270'9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
2.8604 × 10-5-1.4
AT3G28270'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type'genotype, infectTranscription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei
Adjusted p-valueLog2-fold change
3.2809 × 10-5-1.4
AT3G28270'cdkf,1-2 T-DNA insertion mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis cdkf;1-2 mutant
Adjusted p-valueLog2-fold change
3.2395 × 10-4-1.4
AT3G28270'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
4.7098 × 10-4-1.4
AT3G28270'after cold treatment at 4 degrees Celsius' vs 'before cold treatment'growth conditionTranscription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level
Adjusted p-valueLog2-fold change
6.1298 × 10-41.4
AT3G28270'ein2-1; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
6.4942 × 10-4-1.4
AT3G28270'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '120 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
2.8276 × 10-31.4
AT3G28270'mbs1-1 mutant' vs 'fluorescent (flu) mutant' in 'high light'genotype, growth conditionTranscription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response
Adjusted p-valueLog2-fold change
3.4331 × 10-3-1.4
AT3G28270'ahk3/ahk4 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ahk mutants
Adjusted p-valueLog2-fold change
4.5601 × 10-3-1.4
AT3G28270'Phytophthera infestans' vs 'none' at '6 hour'infect, timeTranscription profiling by array of Arabidopsis after infection with Phytophthera infestans
Adjusted p-valueLog2-fold change
4.7525 × 10-3-1.4
AT3G28270'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control'genotype, treatmentQuantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.1132 × 10-21.4
AT3G28270'salicylic acid' vs 'Silwet' at time: '28 hours' in ecotype: 'Col-0'growth condition, time, ecotypeTranscription profiling by array of seven ecotypes of Arabidopsis thaliana after time course treatment with salicylic acid.
Adjusted p-valueLog2-fold change
3.0146 × 10-2-1.4
AT3G28270'350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
4.4847 × 10-81-1.3
AT3G28270'Ler x C24 F1 hybrid' vs 'C24 ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
1.9441 × 10-50-1.3
AT3G28270'C24 x Ler F1 hybrid' vs 'C24 ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
8.6286 × 10-161.3
AT3G28270'rpotmp anac017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
3.3386 × 10-91.3
AT3G28270'atphb3 anac017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
5.7483 × 10-8-1.3
AT3G28270'Spt4 knock down' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2
Adjusted p-valueLog2-fold change
1.1188 × 10-71.3
AT3G28270'dicamba; 7 millimolar' vs 'none'compoundTranscription profiling by array of Arabidopsis after treatment with dicamba
Adjusted p-valueLog2-fold change
2.9732 × 10-61.3
AT3G28270'bleomycin' vs 'none'stimulusTranscription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes
Adjusted p-valueLog2-fold change
4.0413 × 10-6-1.3
AT3G28270'mechanical stimulation' at '40 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
8.452 × 10-6-1.3
AT3G28270'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '1 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
3.1833 × 10-5-1.3
AT3G28270'bli-1 -/-; ire1b -/-' vs 'wild type genotype'genotypeBLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.4823 × 10-5-1.3
AT3G28270'cs26 mutant' vs 'wild type' in 'long day photoperiod'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods
Adjusted p-valueLog2-fold change
1.3949 × 10-4-1.3
AT3G28270'actin2-5' vs 'wild type'genotypeActin Cytoskeleton Integrates Auxin and Brassinosteroid Signaling in Plants.
Adjusted p-valueLog2-fold change
1.6428 × 10-41.3
AT3G28270'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.826 × 10-41.3
AT3G28270'dexamethasone; CHLD reduction' vs 'dexamethasone; control'compound, phenotypeExpression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway
Adjusted p-valueLog2-fold change
2.9974 × 10-41.3
AT3G28270'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '30 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
3.5882 × 10-4-1.3
AT3G28270'mbd4 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.2607 × 10-4-1.3
AT3G28270''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
9.8028 × 10-4-1.3
AT3G28270'Pseudomonas syringae pv. tomato expressing HopZ1a' vs 'MgCl2' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
1.0218 × 10-3-1.3
AT3G28270'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none'time, treatmentExpression profiling of Col-0 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.2241 × 10-3-1.3
AT3G28270'primisulfuron' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after treatment with primisulfuron herbicide
Adjusted p-valueLog2-fold change
2.9807 × 10-3-1.3
AT3G28270'tga2;tga5;tga6 mutant; phytoprostane' vs 'Col-0; phytoprostane'compound, genotypeTranscription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid
Adjusted p-valueLog2-fold change
4.1129 × 10-3-1.3
AT3G28270'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C'genotype, growth conditionExpression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants
Adjusted p-valueLog2-fold change
4.4911 × 10-31.3
AT3G28270'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.1681 × 10-2-1.3
AT3G28270'iron; 100 micromolar' vs 'none' in 'bhlh100/101 double mutant; shoot'compound, genotype, organism partExpression data from Arabidopsis roots and shoots grown with or without iron
Adjusted p-valueLog2-fold change
2.6879 × 10-21.3
AT3G28270'abscisic acid 2 micromolar' vs 'control' in 'no SNRK3.15 expression'growth condition, phenotypeTranscription profiling of DEX-inducible SNRK3.15 Arabidopsis seedlings in the presence of ABA
Adjusted p-valueLog2-fold change
3.8273 × 10-2-1.3
AT3G28270'flg22' vs 'none' in '35S::AFB1'genotype, treatmentTranscription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22
Adjusted p-valueLog2-fold change
4.3128 × 10-21.3
AT3G28270'tim23 over-expression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis tim23 knock-out and over-expressing plants compared to wild-type
Adjusted p-valueLog2-fold change
4.7045 × 10-21.3
AT3G28270'ein2 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
4.9149 × 10-2-1.3
AT3G28270'ga1-3 gai-t6 rga-t2 rgl1-1 rgl2-1' vs 'wild type' in 'flg22' at '1 hour'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.1948 × 10-291.2
AT3G28270'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.8518 × 10-11-1.2
AT3G28270'lsm4 mutant' vs 'wild type' in 'Columbia ecotype'ecotype, genotypeTranscription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants
Adjusted p-valueLog2-fold change
3.1973 × 10-7-1.2
AT3G28270'sodium sulfide; des1' vs 'water; des1'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
2.5371 × 10-61.2
AT3G28270'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
8.052 × 10-61.2
AT3G28270'estradiol; 2 micromolar' vs 'DMSO' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol
Adjusted p-valueLog2-fold change
4.6512 × 10-51.2
AT3G28270'wild type; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'wild type; UV-B light regimen (345 nm); control'genotype, light, time, treatmentTranscription profiling of Arabodpsis seedings exposed to UV-B irradiation
Adjusted p-valueLog2-fold change
6.7763 × 10-51.2
AT3G28270'high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
8.4607 × 10-5-1.2
AT3G28270'9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'polysomal mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
1.2917 × 10-41.2
AT3G28270'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light
Adjusted p-valueLog2-fold change
1.9868 × 10-4-1.2
AT3G28270'MYB96 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants
Adjusted p-valueLog2-fold change
2.7183 × 10-41.2
AT3G28270'ambient carbon dioxide 24h' vs 'ambient carbon dioxide 12h'growth condition, organism part, timeTranscription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels
Adjusted p-valueLog2-fold change
6.3408 × 10-41.2
AT3G28270'msh1 loss of function mutant' vs 'wild type genotype'genotypemRNA sequencing of Arabidopsis thaliana msh1 memory line
Adjusted p-valueLog2-fold change
6.3544 × 10-41.2
AT3G28270'bak1-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
7.5023 × 10-4-1.2
AT3G28270'ahk2/ahk3/ahk4 triple mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ahk mutants
Adjusted p-valueLog2-fold change
1.1949 × 10-3-1.2
AT3G28270'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
1.899 × 10-3-1.2
AT3G28270'50 micromolar antimycin A' vs 'none'treatmentExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Adjusted p-valueLog2-fold change
3.5979 × 10-3-1.2
AT3G28270'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.9492 × 10-3-1.2
AT3G28270'Rhizoctonia solani AG8' vs 'mock'infectExpression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
Adjusted p-valueLog2-fold change
9.3668 × 10-3-1.2
AT3G28270'brm-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
1.4958 × 10-21.2
AT3G28270'drought' vs 'control' at '18:00'growth condition, timeTranscription profiling by array of Arabidopsis after drought conditions sampled at different times of day
Adjusted p-valueLog2-fold change
1.8487 × 10-21.2
AT3G28270'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
2.0173 × 10-21.2
AT3G28270'pkl-1' vs 'wild type'genotypeIdentify differentially expressed genes in 14-day-old pkl seedlings
Adjusted p-valueLog2-fold change
2.218 × 10-2-1.2
AT3G28270'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'wild type'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
1.8022 × 10-331.1
AT3G28270'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.582 × 10-171.1
AT3G28270'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.6088 × 10-101.1
AT3G28270'atphb3 ANAC017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
7.8694 × 10-101.1
AT3G28270'fip37-4 LEC1:FIP37' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings
Adjusted p-valueLog2-fold change
8.1167 × 10-71.1
AT3G28270'35S:LSD1-GFP' vs 'dexamethasone; 30 micromolar; 35S:LSD1-GR'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.2497 × 10-4-1.1
AT3G28270'estrogen induction of FAMA-EAR construct' vs 'none' at '48 hour post induction' at 'age 7 day'age, time, treatmentTranscription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA
Adjusted p-valueLog2-fold change
1.5492 × 10-4-1.1
AT3G28270'clf28 mutant' vs 'wild type' in 'silique'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
1.8558 × 10-41.1
AT3G28270'ein2-1; untreated' at '0 hour' vs 'wild type; untreated' at '0 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
2.829 × 10-4-1.1
AT3G28270'low phosphate' vs 'control' in 'none; wild type'compound, genotype, growth conditionTranscription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes
Adjusted p-valueLog2-fold change
4.0907 × 10-4-1.1
AT3G28270'dexamethasone; 10 micromolar' vs 'none' in 'LBD18 over-expression'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing LBD16 and LBD18 to investigate downstream genes
Adjusted p-valueLog2-fold change
5.3345 × 10-4-1.1
AT3G28270'brm-1' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis
Adjusted p-valueLog2-fold change
5.8285 × 10-4-1.1
AT3G28270'gct-2' vs 'wild type'genotypeThe Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions.
Adjusted p-valueLog2-fold change
6.6355 × 10-4-1.1
AT3G28270'9 hr hypoxia' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
8.557 × 10-41.1
AT3G28270'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
9.1998 × 10-4-1.1
AT3G28270'1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
7.0014 × 10-31.1
AT3G28270'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '30 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
7.6365 × 10-31.1
AT3G28270'oas-a1.1' vs 'wild type' in 'untreated shoot' at '0 hour'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis mutant for oas-a1 after treatment with cadmium chloride
Adjusted p-valueLog2-fold change
9.7081 × 10-31.1
AT3G28270'hydrogen peroxide; 20 millimolar; anac017-1' vs 'water; anac017-1'compound, genotypeTranscription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals
Adjusted p-valueLog2-fold change
1.1256 × 10-21.1
AT3G28270'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant'genotype, infectTranscription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls
Adjusted p-valueLog2-fold change
1.1748 × 10-21.1
AT3G28270'Rhizoctonia solani AG2-1' vs 'mock'infectExpression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
Adjusted p-valueLog2-fold change
2.1219 × 10-2-1.1
AT3G28270'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '72 hour'ecotype, environmental stress, timeTranscription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation
Adjusted p-valueLog2-fold change
2.1914 × 10-21.1
AT3G28270'drought stress' vs 'none' in 'control' at '24 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
2.7746 × 10-21.1
AT3G28270'mbs1-1 mutant' vs 'wild type genotype' in 'high light'genotype, growth conditionTranscription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response
Adjusted p-valueLog2-fold change
2.7908 × 10-2-1.1
AT3G28270'spl13 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for or overexpressing spl13
Adjusted p-valueLog2-fold change
3.4878 × 10-2-1.1
AT3G28270'pft1-1; 16 degree celsius' vs 'wild type; 16 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
4.8917 × 10-21.1
AT3G28270'sid2 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
8.0115 × 10-14-1
AT3G28270'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.9083 × 10-131
AT3G28270'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
1.2718 × 10-121
AT3G28270'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.2604 × 10-91
AT3G28270'upl3-4 (SALK_035524)' vs 'wild type genotype' in 'none'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
2.0937 × 10-8-1
AT3G28270'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
3.2069 × 10-71
AT3G28270'rlk1 mutant' vs 'wild type' in 'water'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for rlk1 after treatment with chitooctaose
Adjusted p-valueLog2-fold change
1.0104 × 10-61
AT3G28270'Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day'growth condition, infect, sampling time pointLeaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
Adjusted p-valueLog2-fold change
6.3405 × 10-61
AT3G28270'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day'growth condition, infect, sampling time pointLeaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
Adjusted p-valueLog2-fold change
2.2107 × 10-5-1
AT3G28270'chr11-1 chr17-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis chr11-1 chr17-1 mutants
Adjusted p-valueLog2-fold change
2.7561 × 10-5-1
AT3G28270'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant'genotype, infectTranscription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2
Adjusted p-valueLog2-fold change
5.5701 × 10-5-1
AT3G28270'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day'age, time, treatmentTranscription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA
Adjusted p-valueLog2-fold change
7.5064 × 10-51
AT3G28270'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light
Adjusted p-valueLog2-fold change
1.233 × 10-4-1
AT3G28270'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.816 × 10-4-1
AT3G28270'Phytophthera infestans' vs 'none' at '24 hour'infect, timeTranscription profiling by array of Arabidopsis after infection with Phytophthera infestans
Adjusted p-valueLog2-fold change
2.5624 × 10-41
AT3G28270'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control'genotypeTranscription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750
Adjusted p-valueLog2-fold change
2.5881 × 10-4-1
AT3G28270'hyl1 mutant' vs 'wild type' in 'Col-0'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6
Adjusted p-valueLog2-fold change
7.2035 × 10-41
AT3G28270'lug-3 mutant' vs 'wild type' in 'flower'genotype, organism partTranscription profiling by array of Arabidopsis lug-3 mutant plants
Adjusted p-valueLog2-fold change
7.3541 × 10-41
AT3G28270'nhx5-2/nhx6-2 knock outs' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants
Adjusted p-valueLog2-fold change
1.1043 × 10-3-1
AT3G28270'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium and resupplied with Pi for 4 h'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
1.8486 × 10-3-1
AT3G28270'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bur-0'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.7383 × 10-31
AT3G28270'lsd1-1' vs 'wild type genotype' in 'none'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.185 × 10-31
AT3G28270'coatlique mutant' vs 'wild type'genotypeArabidopsis thaliana embryo sac transcriptome
Adjusted p-valueLog2-fold change
8.1381 × 10-3-1
AT3G28270'mechanical stimulation' at '25 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
9.2063 × 10-31
AT3G28270'constant darkness' vs 'constant white light' in 'leaf without petiole'growth condition, organism partTranscription profiling by array of Arabidopsis subjected to far-red light pulse treatment
Adjusted p-valueLog2-fold change
9.2327 × 10-31
AT3G28270'arr10 arr12 double mutant' vs 'wild type' in 'control'compound, genotypeTranscription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin
Adjusted p-valueLog2-fold change
1.0178 × 10-21
AT3G28270'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day'growth condition, infect, sampling time pointLeaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
Adjusted p-valueLog2-fold change
1.1808 × 10-21
AT3G28270'ga1-3 mutant' vs 'wild type' in 'flower bud'genotype, organism partTranscription profiling of Arabidopsis seed and flowers of ga1-3 mutant
Adjusted p-valueLog2-fold change
2.3646 × 10-2-1
AT3G28270'Flg-22 1uM' vs 'water' at '4 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1