10.3 | | AT3G28310 | 'rhd6 WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
-4.6 | | AT3G28310 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-4.5 | | AT3G28310 | 'met1 mutant' vs 'wild type' at '0 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
4.4 | | AT3G28310 | 'lec1-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
4.3 | | AT3G28310 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-3.8 | | AT3G28310 | '1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
-3.7 | | AT3G28310 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
3.6 | | AT3G28310 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-3.6 | | AT3G28310 | 'met1 mutant' vs 'wild type' at '6 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-3.6 | | AT3G28310 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-3.3 | | AT3G28310 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-3.3 | | AT3G28310 | '1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '0 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
3.2 | | AT3G28310 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
3.1 | | AT3G28310 | 'lec1-1 mutant' vs 'wild type' in '8 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
3 | | AT3G28310 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-3 | | AT3G28310 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-2.9 | | AT3G28310 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-2.7 | | AT3G28310 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.6 | | AT3G28310 | 'gtl1-1 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis trichome from 5th and 6th rosette leaves of gtl1-1 mutant and wild type controls |
-2.5 | | AT3G28310 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.5 | | AT3G28310 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
2.4 | | AT3G28310 | 'atx1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for atx1 |
-2.3 | | AT3G28310 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.2 | | AT3G28310 | 'siz1-3' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
-2.2 | | AT3G28310 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
2.2 | | AT3G28310 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-2.1 | | AT3G28310 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
-2 | | AT3G28310 | 'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
1.9 | | AT3G28310 | 'scarecrow mutant' vs 'wild type' | genotype | Transcription profiling of Scarecrow mutant Arabidopsis root-tips of 5-day-old plants to those of wildtype reveals an evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants |
-1.9 | | AT3G28310 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
-1.9 | | AT3G28310 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
-1.9 | | AT3G28310 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
1.8 | | AT3G28310 | '4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
1.8 | | AT3G28310 | 'hda6 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants |
-1.8 | | AT3G28310 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.7 | | AT3G28310 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-1.7 | | AT3G28310 | 'dexamethasone; CHLD reduction' vs 'dexamethasone; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
-1.7 | | AT3G28310 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-1.7 | | AT3G28310 | 'tim23 knockout' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis tim23 knock-out and over-expressing plants compared to wild-type |
-1.7 | | AT3G28310 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '30 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.6 | | AT3G28310 | 'vtc1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
-1.6 | | AT3G28310 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KCl' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KCl' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
-1.6 | | AT3G28310 | 'tim23 over-expression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis tim23 knock-out and over-expressing plants compared to wild-type |
-1.6 | | AT3G28310 | "40 microampere of electric current for 10 second" vs "no electric current injection" | growth condition | Transcription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls |
-1.5 | | AT3G28310 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-1.5 | | AT3G28310 | 'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1.5 | | AT3G28310 | 'oxt6 mutant' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-1.4 | | AT3G28310 | 'Phytophthora infestans' vs 'none' in 'wild type' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.4 | | AT3G28310 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.4 | | AT3G28310 | '3% glucose; 0.1% epibrassinolide' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
-1.4 | | AT3G28310 | 'rps2 mutant' vs 'wild type genotype' in 'none' at '0 hour' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-1.4 | | AT3G28310 | 'gpt2 T-DNA mutant' vs 'wild type genotype' in 'low light intensity' at '1 day' | genotype, growth condition, time | Acclimation of photosynthesis to changes in the environment results decreases oxidative stress in Arabidopsis thaliana |
1.4 | | AT3G28310 | 'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
1.3 | | AT3G28310 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
-1.3 | | AT3G28310 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
1.3 | | AT3G28310 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.3 | | AT3G28310 | 'NaCl' vs 'control' in 'cortex cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.2 | | AT3G28310 | 'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'Bay-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.2 | | AT3G28310 | 'gun4-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin |
1.2 | | AT3G28310 | 'fus3-3 mutant' vs 'wild type' in '12 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.2 | | AT3G28310 | 'bzr1-1D;bri1-116 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1.2 | | AT3G28310 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-1.2 | | AT3G28310 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.2 | | AT3G28310 | 'phyA-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis phyA-1 mutants |
1.2 | | AT3G28310 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
-1.1 | | AT3G28310 | 'pmr6 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
1.1 | | AT3G28310 | 'bri1-5 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
-1.1 | | AT3G28310 | 'dexamethasone; 10 micromolar' vs 'DMSO' in '35S::WRKY23-GR' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
1.1 | | AT3G28310 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
-1.1 | | AT3G28310 | 'lsm5 sad1 double mutant' vs 'wild type' in 'C24' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
1.1 | | AT3G28310 | 'mbd11 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana |
-1.1 | | AT3G28310 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, ethanol, 20 mM KCl' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KCl' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
1.1 | | AT3G28310 | 'Zat10 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing Zat10 under the control of the 35S promoter |
-1.1 | | AT3G28310 | 'methyl jasmonate' vs 'mock' in 'jaz7-1D' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1.1 | | AT3G28310 | '3% glucose' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
-1.1 | | AT3G28310 | 'cct-1' vs 'wild type' | genotype | The Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions. |
-1.1 | | AT3G28310 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1 | | AT3G28310 | 'salicylic acid' vs 'none' in 'sdh1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-1 | | AT3G28310 | '3 percent glucose' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
1 | | AT3G28310 | '9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1 | | AT3G28310 | 'bri1-5/brs1-1D' vs 'wild type' | genotype | Genome-wide expression analysis of bri1-5 and its suppressors brs1-1D, bak1-1D, bri1-1D |
1 | | AT3G28310 | 'rts1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for rts1 |
-1 | | AT3G28310 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
-1 | | AT3G28310 | 'bri1-5/bak1-1D' vs 'wild type' | genotype | Genome-wide expression analysis of bri1-5 and its suppressors brs1-1D, bak1-1D, bri1-1D |
1 | | AT3G28310 | 'C24 x Ler F1 hybrid' vs 'Ler' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis F1 hybrids from crosses between C24, Landsberg erecta (Ler) and Columbia (Col) |
-1 | | AT3G28310 | '3,5-dichloroanthranilic acid' vs 'none' in 'wild type' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |