6.9 | | AT3G44970 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
6 | | AT3G44970 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
5.5 | | AT3G44970 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-4.8 | | AT3G44970 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
4.4 | | AT3G44970 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
4.1 | | AT3G44970 | 'ga1-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
4 | | AT3G44970 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-4 | | AT3G44970 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
3.9 | | AT3G44970 | 'ANAC017 OEb' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
3.9 | | AT3G44970 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
3.9 | | AT3G44970 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
3.5 | | AT3G44970 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
3.4 | | AT3G44970 | 'ANAC017 OEa' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
3.4 | | AT3G44970 | '0.1 mM nitrate' vs '10 mM nitrate' in 'wild type genotype' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
3.4 | | AT3G44970 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
3.3 | | AT3G44970 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
3.3 | | AT3G44970 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-3.3 | | AT3G44970 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
3.2 | | AT3G44970 | 'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
3.2 | | AT3G44970 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
3.1 | | AT3G44970 | 'light pulse at ZT18' vs 'control' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing |
3 | | AT3G44970 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
3 | | AT3G44970 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-2.9 | | AT3G44970 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-2.9 | | AT3G44970 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-2.9 | | AT3G44970 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
2.9 | | AT3G44970 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.9 | | AT3G44970 | 'gai mutant' vs 'wild type' in 'methyl jasmonate' at '1 hour' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
2.9 | | AT3G44970 | 'pnp1-1' vs 'wild type' in 'full nutrient medium' at '168 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
2.8 | | AT3G44970 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
2.8 | | AT3G44970 | 'dexamethasone; CHLD reduction' vs 'dexamethasone; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
2.8 | | AT3G44970 | 'ga1-3, brm-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
2.8 | | AT3G44970 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-2.8 | | AT3G44970 | 'pft1-1; 23 degree celsius' vs 'wild type; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
2.8 | | AT3G44970 | 'transgenic 35S-PaWRKY1' vs 'control' | genotype | Transcription profiling by array of Arabidopsis expressing PaWRKY under the control of the 35S promoter |
2.7 | | AT3G44970 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-2.7 | | AT3G44970 | 'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
2.6 | | AT3G44970 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.6 | | AT3G44970 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
2.6 | | AT3G44970 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-2.6 | | AT3G44970 | 'hy5' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
2.6 | | AT3G44970 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-2.6 | | AT3G44970 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-2.5 | | AT3G44970 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-2.5 | | AT3G44970 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
2.5 | | AT3G44970 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-2.5 | | AT3G44970 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-2.5 | | AT3G44970 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
2.4 | | AT3G44970 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.4 | | AT3G44970 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wild type; Botrytis cinerea 2100' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
2.4 | | AT3G44970 | 'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
2.4 | | AT3G44970 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-2.3 | | AT3G44970 | 'pdx3-3 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
-2.3 | | AT3G44970 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-2.3 | | AT3G44970 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
-2.3 | | AT3G44970 | 'hy5' vs 'wild type' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
-2.3 | | AT3G44970 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
-2.3 | | AT3G44970 | '35S::MIF1; light' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
2.2 | | AT3G44970 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.2 | | AT3G44970 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
2.2 | | AT3G44970 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
2.2 | | AT3G44970 | 'pnp1-1' vs 'wild type' in 'nutrient medium minus phosphate' at '3 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
2.1 | | AT3G44970 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.1 | | AT3G44970 | 'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
2.1 | | AT3G44970 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-2.1 | | AT3G44970 | 'ASL9 overexpressor' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing ASL9 |
-2.1 | | AT3G44970 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-2.1 | | AT3G44970 | 'pft1 mutant' vs 'wild type' in 'control' at '0 hour' | genotype, growth condition, time | pft1 glucose responses |
-2.1 | | AT3G44970 | 'dexamethasone' vs 'no compound' in 'GVGdvl4' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone |
2.1 | | AT3G44970 | 'CAP-D3 mutant line SAIL_826_B06' vs 'wild type genotype' | genotype | Influence of CAP-D3 in Arabidopsis thaliana transcription |
2.1 | | AT3G44970 | 'tor mutant' vs 'wild type' in 'glucose; 15 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
2 | | AT3G44970 | 'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA' | fraction, genotype, protocol | Direct RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana |
2 | | AT3G44970 | 'wild type; UV-B light regimen (345 nm); 6 hour; 305nm' vs 'wild type; UV-B light regimen (345 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
2 | | AT3G44970 | '4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type' | genotype, growth condition | Gene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h |
2 | | AT3G44970 | 'SAB' vs 'wild type genotype' | genotype | Transcription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation |
2 | | AT3G44970 | 'SIZ1' vs 'wild type genotype' | genotype | Transcription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation |
2 | | AT3G44970 | 'gai mutant' vs 'wild type' in 'flg22' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
-2 | | AT3G44970 | 'pft1 mutant' vs 'wild type' in 'glucose' at '6 hour' | genotype, growth condition, time | pft1 glucose responses |
1.9 | | AT3G44970 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |
1.9 | | AT3G44970 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
-1.9 | | AT3G44970 | 'hos1-3 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis hos1-3 seedlings |
-1.9 | | AT3G44970 | 'arp6-1; mbd9-3' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
-1.9 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-1.9 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-1.9 | | AT3G44970 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-1.9 | | AT3G44970 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.9 | | AT3G44970 | 'ron1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ron1 |
1.9 | | AT3G44970 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.9 | | AT3G44970 | 'rao1-1 mutant' vs 'wild type' in 'water' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
-1.9 | | AT3G44970 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
1.9 | | AT3G44970 | 'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
1.8 | | AT3G44970 | 'wrky33 mutant; mock' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
-1.8 | | AT3G44970 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-1.8 | | AT3G44970 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
1.8 | | AT3G44970 | 'PIF5 overexpressing; low red/far-red light ratio' vs 'wild type; low red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
-1.8 | | AT3G44970 | 'sid2-1 mutant; mock' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
1.8 | | AT3G44970 | 'dehydration; wild type' vs 'none; wild type' | environmental stress, genotype | Transcription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis |
1.7 | | AT3G44970 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1.7 | | AT3G44970 | 'ethanol' at '4 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1.7 | | AT3G44970 | 'siz1-3' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
1.7 | | AT3G44970 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
-1.7 | | AT3G44970 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.7 | | AT3G44970 | 'drought stress' vs 'none' in 'control' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.7 | | AT3G44970 | 'rao1-1 mutant' vs 'wild type' in 'antimycin A; 50 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1.7 | | AT3G44970 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.7 | | AT3G44970 | 'treated with 2-(2,4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid; 5 micromolar' vs 'control' | compound | Activation of auxin signalling counteracts photorespiratory hydrogen peroxide dependent cell death |
1.7 | | AT3G44970 | 'pvip1; pvip2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pvip1 and pvip2 |
1.6 | | AT3G44970 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'none' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.6 | | AT3G44970 | 'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.6 | | AT3G44970 | 'double mutant at3g03940/at518190 knockdown' vs 'wild type' | genotype | Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression] |
-1.6 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-1.6 | | AT3G44970 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
1.6 | | AT3G44970 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'wild type' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
-1.6 | | AT3G44970 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.6 | | AT3G44970 | '35S::KLU' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis 35S::KLU shoots compared to wild type shoots |
-1.6 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wild type' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
1.6 | | AT3G44970 | 'axr3-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.6 | | AT3G44970 | 'gai mutant' vs 'wild type' in 'flg22' at '1 hour' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
-1.6 | | AT3G44970 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.5 | | AT3G44970 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
1.5 | | AT3G44970 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.5 | | AT3G44970 | 'sfr6-2' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
1.5 | | AT3G44970 | 'smg7-1 pad4-1 double mutant' vs 'pad4-1 mutant' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis smg7 pad4 double mutant |
1.5 | | AT3G44970 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.5 | | AT3G44970 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.5 | | AT3G44970 | 'xrn3-8 mutant' vs 'wild type genotype' at '60 minutes after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
-1.5 | | AT3G44970 | '9 hr hypoxia' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.5 | | AT3G44970 | 'axr3-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.5 | | AT3G44970 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.5 | | AT3G44970 | 'RNAi knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1.5 | | AT3G44970 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.5 | | AT3G44970 | 'high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-1.5 | | AT3G44970 | '2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide' vs 'none' | compound | Expression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO |
-1.5 | | AT3G44970 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-1.4 | | AT3G44970 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
-1.4 | | AT3G44970 | 'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day' | age, time, treatment | Transcription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA |
-1.4 | | AT3G44970 | 'MYB96 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants |
-1.4 | | AT3G44970 | '35S:LSD1-GFP' vs 'dexamethasone; 30 micromolar; 35S:LSD1-GR' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
-1.4 | | AT3G44970 | 'mock inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.4 | | AT3G44970 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
-1.4 | | AT3G44970 | 'nhx5-2 knock out' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
-1.4 | | AT3G44970 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.3 | | AT3G44970 | 'med5b-3; ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
1.3 | | AT3G44970 | 'ref4-3; cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.3 | | AT3G44970 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.3 | | AT3G44970 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.3 | | AT3G44970 | 'prmt5 mutant' vs 'wild type' | genotype | Genome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes |
1.3 | | AT3G44970 | 'atphb3 anac017' vs 'wild type' | age, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins |
-1.3 | | AT3G44970 | 'letm1-2 heterozygous, letm2-1 homozygous double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
1.3 | | AT3G44970 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.3 | | AT3G44970 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.3 | | AT3G44970 | 'gapcp mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for gapcp |
1.3 | | AT3G44970 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
-1.3 | | AT3G44970 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.3 | | AT3G44970 | 'nhx5-2/nhx6-2 knock outs' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
1.3 | | AT3G44970 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.3 | | AT3G44970 | '35S:MBS1 overexpression' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
-1.3 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
1.3 | | AT3G44970 | 'tunicamycin; ire1a ire1b mutant' vs 'tunicamycin; wild type' | compound, genotype | Transcriptome analysis of ire1 mutants after treatment with or without tunicamycin in the presence of actinomycin D |
1.3 | | AT3G44970 | 'beta-estradiol; CHLM overexpression' vs 'beta-estradiol; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
-1.3 | | AT3G44970 | 'pkl-1' vs 'wild type' | genotype | Identify differentially expressed genes in 14-day-old pkl seedlings |
-1.3 | | AT3G44970 | 'triazolopyrimidine' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with triazolopyrimidine |
1.3 | | AT3G44970 | 'rao1-2 mutant' vs 'wild type' in 'water' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
-1.3 | | AT3G44970 | 'returned to basal medium 1 day after osmotic stress' vs 'control' in 'leaf' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
1.3 | | AT3G44970 | 'AB' vs 'wild type genotype' | genotype | Transcription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation |
1.3 | | AT3G44970 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.3 | | AT3G44970 | "rps10 RNAi; early onset of silencing (P2)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
1.3 | | AT3G44970 | 'shoot; phosphate starvation 10 days' vs 'shoot; mock' | organism part, treatment | The response and recovery of Arabidopsis thaliana transcriptome to phosphate starvation [ATH1-121501] |
1.2 | | AT3G44970 | 'Methylobacterium extorquens PA1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
1.2 | | AT3G44970 | 'low phosphate' vs 'control' in 'none; wild type' | compound, genotype, growth condition | Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes |
-1.2 | | AT3G44970 | 'gun4-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin |
1.2 | | AT3G44970 | 'T-DNA knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1.2 | | AT3G44970 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.2 | | AT3G44970 | 'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-1.2 | | AT3G44970 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.2 | | AT3G44970 | '5 micromolar gibberellin' vs 'water' at 180 minute | growth condition, time | Transcription profiling by array of Arabidopsis expressing PcGA2ox1 after treatment with gibberellin |
-1.2 | | AT3G44970 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '60 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1.2 | | AT3G44970 | 'mock inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.2 | | AT3G44970 | 'wnk8-1 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
-1.2 | | AT3G44970 | 'wnk8-3 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
1.2 | | AT3G44970 | 'srk2dei triple mutant' vs 'wild type' in '50 micromolar abscisic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.2 | | AT3G44970 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.2 | | AT3G44970 | 'abi4-102' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
-1.2 | | AT3G44970 | 'hyl1 loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
1.2 | | AT3G44970 | 'inducible 35S:LOB-GR line' vs 'wild type' in 'none' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
1.1 | | AT3G44970 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.1 | | AT3G44970 | 'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' | genotype, light, time | Expression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings |
1.1 | | AT3G44970 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.1 | | AT3G44970 | 'siz1-3' vs 'wild type' in 'drought' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
1.1 | | AT3G44970 | 'srk2dei triple mutant' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.1 | | AT3G44970 | 'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.1 | | AT3G44970 | 'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.1 | | AT3G44970 | 'cbp80; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
1.1 | | AT3G44970 | 'cbp80 loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
-1.1 | | AT3G44970 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.1 | | AT3G44970 | 'wnk8-2 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
-1.1 | | AT3G44970 | 'wild type; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'wild type; UV-B light regimen (305 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
1.1 | | AT3G44970 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.1 | | AT3G44970 | 'drought stress' vs 'none' in 'control' at '2 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
-1.1 | | AT3G44970 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.1 | | AT3G44970 | 'cs26 mutant' vs 'wild type' in 'short day photoperiod' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods |
-1.1 | | AT3G44970 | 'camta1/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1.1 | | AT3G44970 | 'ahk2/ahk3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.1 | | AT3G44970 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; red light' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
1.1 | | AT3G44970 | 'light pulse in the middle of the night' vs 'night time control' | growth condition | RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock |
1.1 | | AT3G44970 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.1 | | AT3G44970 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-1.1 | | AT3G44970 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
-1.1 | | AT3G44970 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-1 | | AT3G44970 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
1 | | AT3G44970 | 'xrn3-8 mutant' vs 'wild type genotype' at 'immediately after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
1 | | AT3G44970 | 'T-DNA knock out line 1' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
1 | | AT3G44970 | 'transgenic plants ectopically expressing UGT74E2' vs 'wild type' | genotype | Transcript profiling of Arabidopsis thaliana transgenic seedlings constitutively overexpressing UGT74E2 (35S::UGT74E2). |
1 | | AT3G44970 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1 | | AT3G44970 | 'mbd4 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana |
-1 | | AT3G44970 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '30 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1 | | AT3G44970 | 'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis rsa1-1 mutants under salt stress |
1 | | AT3G44970 | 'phosphate-lacking medium' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1 | | AT3G44970 | 'Tsu-1' vs 'Col-0' | ecotype | Transcription profiling by array of Arabidopsis ecotypes Col-0, Ts-1, Tsu-1 and Ts-1 and Tsu-1 crossed with Col-0 |
-1 | | AT3G44970 | 'spl13 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for or overexpressing spl13 |
-1 | | AT3G44970 | 'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1 | | AT3G44970 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1 | | AT3G44970 | 'gai mutant' vs 'wild type' in 'flg22' at '2 hour' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
1 | | AT3G44970 | 'sid2-1 mutant; Pseudomonas syringae pv. maculicola str. ES4326' vs 'sid2-1 mutant; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
1 | | AT3G44970 | '35S:LSD1-GFP' vs 'wild type genotype' in 'none' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
-1 | | AT3G44970 | 'mkk2 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk2 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
1 | | AT3G44970 | 'dehydration; 46T' vs 'none; 46T' | environmental stress, genotype | Transcription factor WRKY46 regulates osmotic stress responses and stomatal movement tissue specifically and independently in Arabidopsis |
-1 | | AT3G44970 | 'At1G60900 homozygous knockout' vs 'wild type genotype' | genotype | RNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col). |
1 | | AT3G44970 | 'L2.4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis expressing mutant forms of beet curly-top virus L2 protein |
1 | | AT3G44970 | 'tga2;tga5;tga6 mutant; phytoprostane' vs 'Col-0; phytoprostane' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid |
-1 | | AT3G44970 | 'BASS knock out' vs 'wild type' | genotype | Transcription profiling by array of leaves from BASS knock-out Arabidopsis plants |