AT3G47470 (LHCA4)

arabidopsis thaliana

Chlorophyll a-b binding protein, chloroplastic

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
5.5382 × 10-11-6.5
LHCA4'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
3.3219 × 10-6-6.4
LHCA4'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'ein2-5'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
00
Log2-fold change
6.3
LHCA4'7 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
00
Log2-fold change
6.3
LHCA4'5 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.1933 × 10-5-6.3
LHCA4'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'ein2-5'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.2336 × 10-5-6.3
LHCA4'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'ein2-5'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
00
Log2-fold change
6.2
LHCA4'10 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
4.3311 × 10-153-6.2
LHCA4'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
3.005 × 10-5-6
LHCA4'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'ein2-5'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.6365 × 10-4-5.9
LHCA4'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
00
Log2-fold change
5.6
LHCA4'14 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
2.4274 × 10-4-5.6
LHCA4'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
2.4951 × 10-4-5.6
LHCA4'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
5.9896 × 10-5-5.5
LHCA4'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.3473 × 10-4-5.5
LHCA4'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'jar1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
2.486 × 10-3-5.2
LHCA4'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
8.976 × 10-8-5.1
LHCA4'auxin' vs 'none' in '35 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
5.6798 × 10-4-5
LHCA4'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
00
Log2-fold change
-4.8
LHCA4'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.5557 × 10-4-4.8
LHCA4'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'npr1-1'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
00
Log2-fold change
-4.6
LHCA4'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
00
Log2-fold change
-4.6
LHCA4'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
00
Log2-fold change
-4.6
LHCA4'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.984 × 10-114.6
LHCA4'lec1-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
9.7111 × 10-94.4
LHCA4'abi3-6 mutant' vs 'wild type' in '16 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
2.6483 × 10-3-4.3
LHCA4'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
4.6785 × 10-3-4.2
LHCA4'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
1.8074 × 10-30-4.1
LHCA4'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
2.6124 × 10-94.1
LHCA4'lec2-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
1.8634 × 10-4-4
LHCA4'tcx2; CYCD6:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
3.7741 × 10-10-3.8
LHCA4''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.6314 × 10-2-3.8
LHCA4'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'wild type genotype'compound, genotype, timeEXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II
Adjusted p-valueLog2-fold change
2.7796 × 10-33.6
LHCA4'Plasmodiophora brassicae' vs 'none' at '23 day'infect, timePlasmodiophora brassicae infection of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.7739 × 10-953.5
LHCA4'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
3.4704 × 10-5-3.5
LHCA4'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
2.4873 × 10-953.4
LHCA4'4 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
00
Log2-fold change
3.3
LHCA4'link1link2 double mutant' vs 'wild type genotype' at '14 hour'genotype, timeRNA-seq of coding RNA from 9-day old Arabidopsis seedlings of link1link2 double mutants against wild-type controls grown under continuuous light or long day conditions and sampled across a 24-hour time-course
Adjusted p-valueLog2-fold change
1.1578 × 10-2-3.3
LHCA4'2hr continuous KNO3' vs 'control' in 'epidermis and cortex'compound, organism partTranscription profiling by array of Arabidopsis root cells after treatment with KNO3
Adjusted p-valueLog2-fold change
9.0761 × 10-4-3.2
LHCA4'5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
1.3957 × 10-1533.1
LHCA4'1 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
1.6665 × 10-3-3
LHCA4'tcx2; WOX5:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
2.874 × 10-562.9
LHCA4'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
7.9131 × 10-6-2.9
LHCA4'protoplasting' vs 'control'treatmentTranscription profiling by array of Arabidopsis protoplasted root cells after iron deprivation
Adjusted p-valueLog2-fold change
1.7406 × 10-4-2.9
LHCA4'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.6255 × 10-32.9
LHCA4'rps2 mutant' vs 'wild type genotype' in 'Pseudomonas syringae pv. maculicola carrying AvrRpt2' at '10 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.1114 × 10-20-2.8
LHCA4'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
5.2851 × 10-92.8
LHCA4'abi3-6 mutant' vs 'wild type' in '12 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
1.7395 × 10-5-2.8
LHCA4'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.0409 × 10-92.7
LHCA4'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
9.3934 × 10-62.7
LHCA4'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark'RNA, time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with white light
Adjusted p-valueLog2-fold change
2.7149 × 10-122.6
LHCA4'18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
7.1123 × 10-10-2.6
LHCA4'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.2273 × 10-82.5
LHCA4'continuous red light' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
3.9228 × 10-58-2.4
LHCA4'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.3385 × 10-482.4
LHCA4'2 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
3.4049 × 10-302.4
LHCA4'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type genotype'genotypeRNA-seq of coding RNA of Arabidopsis Phytochrome (phy)-Interacting bHLH Factor (PIF) mutants against wild-type controls to study target genes of PIF
Adjusted p-valueLog2-fold change
8.5511 × 10-82.4
LHCA4'continuous white light' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
1.5365 × 10-6-2.4
LHCA4'sucrose; 1 percent' vs 'none' in 'RBRcs mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
2.3676 × 10-2-2.4
LHCA4'2hr transitory KNO3' vs 'control' in 'epidermis and cortex'compound, organism partTranscription profiling by array of Arabidopsis root cells after treatment with KNO3
Adjusted p-valueLog2-fold change
4.8882 × 10-72-2.3
LHCA4'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
2.1261 × 10-652.3
LHCA4'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
1.0074 × 10-15-2.3
LHCA4'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance
Adjusted p-valueLog2-fold change
5.2055 × 10-92.3
LHCA4'continuous far-red light' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
1.6578 × 10-72.3
LHCA4'continuous blue light' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
5.1527 × 10-42.3
LHCA4'apl mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls
Adjusted p-valueLog2-fold change
1.025 × 10-100-2.2
LHCA4'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
1.2617 × 10-56-2.2
LHCA4'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
5.2962 × 10-8-2.2
LHCA4'drought' vs 'control' in 'wild type; root'genotype, growth condition, organism partRole of CAMTA1 gene under drought stress
Adjusted p-valueLog2-fold change
3.0029 × 10-352.1
LHCA4'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar'stimulusEthylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway.
Adjusted p-valueLog2-fold change
1.0337 × 10-92.1
LHCA4'18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
7.9304 × 10-9-2.1
LHCA4'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
2.5175 × 10-62.1
LHCA4'seed germinating in continuous light 6 h SL' vs 'seed germinating in continuous light 1 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
1.4475 × 10-52.1
LHCA4'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
4.41 × 10-42.1
LHCA4'atbzip16; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'atbzip16; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
1.8848 × 10-32.1
LHCA4'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
1.9177 × 10-2162
LHCA4'light pulse at ZT18' vs 'control'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing
Adjusted p-valueLog2-fold change
9.3333 × 10-312
LHCA4'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
4.075 × 10-30-2
LHCA4'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
6.4187 × 10-82
LHCA4'1 min red light pulse + 4 h darkness' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
1.5871 × 10-21-1.9
LHCA4'ANAC017 OEb' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
5.2254 × 10-41.9
LHCA4'5 min UV-A light pulse + 4 h darkness' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
2.7108 × 10-59-1.8
LHCA4'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
1.8066 × 10-10-1.8
LHCA4'ANAC017 OEa' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
3.8089 × 10-7-1.8
LHCA4'4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none'treatmentExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Adjusted p-valueLog2-fold change
6.4758 × 10-61.8
LHCA4'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
8.0725 × 10-71-1.7
LHCA4'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.8247 × 10-17-1.7
LHCA4'ozone; 350 nanoliter' vs 'none' in 'Shahdara'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
1.4973 × 10-6-1.7
LHCA4'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
4.2714 × 10-61.7
LHCA4'240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
6.3825 × 10-51.7
LHCA4'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark'RNA, time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with white light
Adjusted p-valueLog2-fold change
6.8572 × 10-51.7
LHCA4'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
2.03 × 10-41.7
LHCA4'5 min UV-A/B light pulse + 4 h darkness' vs 'complete darkness' at '4 h'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
4.8684 × 10-31.7
LHCA4'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
1.9076 × 10-98-1.6
LHCA4'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.4767 × 10-16-1.6
LHCA4'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
3.2261 × 10-71.6
LHCA4'35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar'compound, genotypeMicroarray designed to find PIN polarity regulators downstream of TIR1/AFB
Adjusted p-valueLog2-fold change
1.1379 × 10-51.6
LHCA4'oxt6:AtCPSF30' vs 'wild type'genotypeA polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3979 × 10-5-1.6
LHCA4'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
8.4112 × 10-5-1.6
LHCA4'16 hour (dark)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
1.1152 × 10-41.6
LHCA4'240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
2.533 × 10-4-1.6
LHCA4'indole-3-acetic acid; 5 micromolar' vs 'none' in 'whole root'compound, organism partTranscription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls
Adjusted p-valueLog2-fold change
5.0887 × 10-18-1.5
LHCA4'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
2.8694 × 10-17-1.5
LHCA4'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
2.8848 × 10-16-1.5
LHCA4'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.3454 × 10-12-1.5
LHCA4'clf28 mutant' vs 'wild type' in 'root'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
2.2617 × 10-8-1.5
LHCA4'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.2316 × 10-71.5
LHCA4'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
2.0697 × 10-71.5
LHCA4'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light
Adjusted p-valueLog2-fold change
9.8098 × 10-7-1.5
LHCA4'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant'genotypeTranscription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only
Adjusted p-valueLog2-fold change
7.773 × 10-6-1.5
LHCA4'9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
2.4556 × 10-5-1.5
LHCA4'AP1::AtIPT4 transgenic plant' vs 'wild type'genotypeTranscription profiling by array of young inflorescences of AP1∷AtIPT4 Arabidopsis thaliana transgenic plants to identify the candidate genes responsive to cytokinin
Adjusted p-valueLog2-fold change
2.5223 × 10-5-1.5
LHCA4'inducible 35S:LOB-GR line' vs 'wild type' in 'none'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.6592 × 10-5-1.5
LHCA4'phyA-1 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis phyA-1 mutants
Adjusted p-valueLog2-fold change
1.049 × 10-2-1.5
LHCA4'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '72 hour'ecotype, environmental stress, timeTranscription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation
Adjusted p-valueLog2-fold change
1.3746 × 10-2-1.5
LHCA4'5 day; naphthaleneacetic acid' vs '2 day; naphthaleneacetic acid' in 'stem tissue'growth condition, organism part, timeTranscription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid
Adjusted p-valueLog2-fold change
1.4855 × 10-2-1.5
LHCA4'pBeaconRFP_IAA19mll overexpressor; none' vs 'pMON999_mRFP control vector; none'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.1615 × 10-2-1.5
LHCA4'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
9.9813 × 10-771.4
LHCA4'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.5034 × 10-15-1.4
LHCA4'350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
3.6157 × 10-14-1.4
LHCA4'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.3546 × 10-14-1.4
LHCA4'350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
8.835 × 10-91.4
LHCA4'35S:GFP-FHY1; fhy1-1 transgenic line' vs 'fhy1-1 mutant'genotypeTranscription profiling by high throughput sequencing of Arabidopsis 35S:GFP-FHY1; fhy1-1 transgenic line compared to fhy1-1 mutant
Adjusted p-valueLog2-fold change
1.0478 × 10-6-1.4
LHCA4'12h' vs '4h'organism part, timeTranscription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light
Adjusted p-valueLog2-fold change
8.5757 × 10-51.4
LHCA4'24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
1.3206 × 10-41.4
LHCA4'24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
2.3779 × 10-41.4
LHCA4'120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
4.3179 × 10-41.4
LHCA4'bri1-116 null mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1
Adjusted p-valueLog2-fold change
1.3718 × 10-3-1.4
LHCA4'high light' vs 'control'environmental stressGene expression from Arabidopsis under high light conditions
Adjusted p-valueLog2-fold change
1.8428 × 10-3-1.4
LHCA4'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.9145 × 10-421.3
LHCA4'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.0909 × 10-28-1.3
LHCA4'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock'genotype, infectWRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
Adjusted p-valueLog2-fold change
4.272 × 10-23-1.3
LHCA4'ozone; 350 nanoliter' vs 'none' in 'Cvi-0'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
3.3129 × 10-13-1.3
LHCA4'DCC1 mutant' vs 'wild type genotype'genotypeThioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
Adjusted p-valueLog2-fold change
1.1741 × 10-9-1.3
LHCA4'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
3.0651 × 10-7-1.3
LHCA4'350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
5.9067 × 10-7-1.3
LHCA4'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type'genotype, infectTranscription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei
Adjusted p-valueLog2-fold change
1.2404 × 10-6-1.3
LHCA4'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3615 × 10-6-1.3
LHCA4'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.586 × 10-5-1.3
LHCA4'Pseudomonas syringae ES4326' vs 'none' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
6.8825 × 10-51.3
LHCA4'4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type'genotype, growth conditionGene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
Adjusted p-valueLog2-fold change
8.1608 × 10-5-1.3
LHCA4'1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
1.4977 × 10-41.3
LHCA4'bri1-116 null mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only
Adjusted p-valueLog2-fold change
3.8533 × 10-4-1.3
LHCA4'2 hour; excess light' vs '0 hour; low light' in 'tnr4 mutant'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
8.0339 × 10-4-1.3
LHCA4'scarecrow mutant' vs 'wild type'genotypeTranscription profiling of Scarecrow mutant Arabidopsis root-tips of 5-day-old plants to those of wildtype reveals an evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
Adjusted p-valueLog2-fold change
7.464 × 10-31.3
LHCA4'amp1-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild type and AMP1 mutant seeds
Adjusted p-valueLog2-fold change
1.0124 × 10-2-1.3
LHCA4'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour'ecotype, environmental stress, timeTranscription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation
Adjusted p-valueLog2-fold change
2.2765 × 10-21.3
LHCA4'100 micromolar ATP' vs 'control' in 'wild type'genotype, growth conditionATP effect on Arabidopsis roots
Adjusted p-valueLog2-fold change
3.6916 × 10-21.3
LHCA4'nutrient solution with caesium; root' vs 'control; root'growth condition, organism partTranscription profiling by array of Arabidopsis after potassium starvation or treatment with caesium
Adjusted p-valueLog2-fold change
6.3056 × 10-491.2
LHCA4'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.2792 × 10-46-1.2
LHCA4'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.0568 × 10-291.2
LHCA4'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.4353 × 10-19-1.2
LHCA4'350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
6.9354 × 10-15-1.2
LHCA4'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
3.3641 × 10-13-1.2
LHCA4'ANAC017 OEa' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
7.6968 × 10-91.2
LHCA4'tmk1-1' vs 'wild type genotype'genotypeTMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.6292 × 10-6-1.2
LHCA4'fbl17-1 (GK_170-E02)' vs 'wild type genotype'genotypeRNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings
Adjusted p-valueLog2-fold change
4.1741 × 10-61.2
LHCA4'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light
Adjusted p-valueLog2-fold change
4.4376 × 10-5-1.2
LHCA4'2 hour; excess light' vs '0 hour; low light' in 'wild type'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
4.6881 × 10-51.2
LHCA4'At1G60900 homozygous knockout' vs 'wild type genotype'genotypeRNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col).
Adjusted p-valueLog2-fold change
5.6883 × 10-5-1.2
LHCA4'hos1-3 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis hos1-3 seedlings
Adjusted p-valueLog2-fold change
1.8592 × 10-41.2
LHCA4'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
3.7769 × 10-4-1.2
LHCA4'S-nitrosocysteine; 1 millimolar' vs 'buffer'compoundTranscription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO)
Adjusted p-valueLog2-fold change
4.8448 × 10-4-1.2
LHCA4'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
8.1005 × 10-41.2
LHCA4'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
1.2809 × 10-3-1.2
LHCA4'dexamethasone and cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
1.7242 × 10-3-1.2
LHCA4'2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
2.5617 × 10-3-1.2
LHCA4'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.7387 × 10-31.2
LHCA4'5 min UV-A light pulse + 40 min darkness' vs 'complete darkness' at '45 min'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
5.257 × 10-31.2
LHCA4'NaCl' vs 'control' in 'epidermal and lateral root cap cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
6.9606 × 10-31.2
LHCA4'5 min UV-A/B light pulse + 40 min darkness' vs 'complete darkness' at '45 min'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
1.3608 × 10-2-1.2
LHCA4'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
1.4861 × 10-2-1.2
LHCA4'jasmonate' at '22 hour' vs 'none' at '0 hour' in 'opr3 mutant'compound, genotype, timeTranscription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid
Adjusted p-valueLog2-fold change
1.5055 × 10-21.2
LHCA4'hda9-1 mutant' vs 'wild type'genotypeComparison of histone deacetylase 9-1 mutant (SALK_001723) dry seed transcriptome with Col wild-type
Adjusted p-valueLog2-fold change
2.4793 × 10-21.2
LHCA4'NaCl' vs 'control' in 'stele cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
3.7672 × 10-2-1.2
LHCA4'9 hours' vs '6 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
2.2111 × 10-301.1
LHCA4'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.6728 × 10-15-1.1
LHCA4'wild type; Botrytis cinerea 2100' vs 'wild type; mock'genotype, infectWRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
Adjusted p-valueLog2-fold change
5.4336 × 10-9-1.1
LHCA4'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
1.4171 × 10-8-1.1
LHCA4'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control'genotype, treatmentQuantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.159 × 10-8-1.1
LHCA4'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
3.8651 × 10-7-1.1
LHCA4'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
8.4868 × 10-7-1.1
LHCA4'ANAC017 OEb' vs 'wild type genotype' at '0 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
2.7054 × 10-6-1.1
LHCA4'3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
5.2276 × 10-6-1.1
LHCA4'3% glucose; 0.1% epibrassinolide' vs 'none'growth conditionGenome wide analysis of glucose brassinosteroid interaction in Arabidopsis
Adjusted p-valueLog2-fold change
6.8709 × 10-6-1.1
LHCA4'12h' vs '4h'organism part, timeTranscription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light
Adjusted p-valueLog2-fold change
1.5941 × 10-5-1.1
LHCA4'350 ppb ozone exposure for 2hr' vs 'none' in 'wild type'environmental stress, genotypeTranscription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment
Adjusted p-valueLog2-fold change
8.8602 × 10-51.1
LHCA4'camta1-3 mutant' vs 'wild type' in 'drought; root'genotype, growth condition, organism partRole of CAMTA1 gene under drought stress
Adjusted p-valueLog2-fold change
1.0696 × 10-3-1.1
LHCA4'Blumeria graminis f. sp. hordei K1; avirulent; 18 hour' vs 'none; wild type phenotype; 18 hour'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
1.8043 × 10-31.1
LHCA4'ein2-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
2.3306 × 10-31.1
LHCA4'AtRsgA-i homozygous knockout' vs 'wild type genotype'genotypeRNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
Adjusted p-valueLog2-fold change
3.6783 × 10-3-1.1
LHCA4'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour'compound, growth condition, timeTranscription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A
Adjusted p-valueLog2-fold change
3.7137 × 10-3-1.1
LHCA4'33 hours' vs '30 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
8.1076 × 10-3-1.1
LHCA4'water deprivation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation
Adjusted p-valueLog2-fold change
1.5146 × 10-2-1.1
LHCA4'sucrose; 1 percent' vs 'none' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
3.5647 × 10-21.1
LHCA4'lrx1 rol1-2' vs 'wild type'genotypeTranscription profiling of Arabidopsis lrx1 root hair mutant and the suppressor mutations lrx1 rol1-1 and lrx1 rol1-2
Adjusted p-valueLog2-fold change
4.023 × 10-2-1.1
LHCA4'dark' vs 'control'environmental stressGene expression from Arabidopsis under high light conditions
Adjusted p-valueLog2-fold change
1.7116 × 10-50-1
LHCA4'ref4-3' vs 'wild type genotype'genotypeGene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1
Adjusted p-valueLog2-fold change
4.7613 × 10-451
LHCA4'35S:LSD1-GFP' vs 'dexamethasone; 30 micromolar; 35S:LSD1-GR'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.1654 × 10-401
LHCA4'35S:LSD1-GFP' vs 'wild type genotype' in 'none'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.8595 × 10-38-1
LHCA4'mannitol; 300 millimolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
9.5524 × 10-211
LHCA4'1 hour of blue light exposure' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis wild type plants during the shift from dark to blue light
Adjusted p-valueLog2-fold change
8.9182 × 10-15-1
LHCA4'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
6.0219 × 10-10-1
LHCA4'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.9929 × 10-8-1
LHCA4'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1099 × 10-81
LHCA4'flg22' vs 'none'stimulusRNA-seq of Arabidopsis thaliana seedlings treated with Flg22 or Pep1
Adjusted p-valueLog2-fold change
1.1421 × 10-7-1
LHCA4'pkl mutant; no compound' vs 'wild type; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
1.2934 × 10-71
LHCA4'brm-1' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis
Adjusted p-valueLog2-fold change
2.418 × 10-7-1
LHCA4''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
6.821 × 10-61
LHCA4'ambient carbon dioxide 24h' vs 'ambient carbon dioxide 12h'growth condition, organism part, timeTranscription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels
Adjusted p-valueLog2-fold change
8.734 × 10-61
LHCA4'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.2077 × 10-5-1
LHCA4'9 hr hypoxia' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
1.9248 × 10-5-1
LHCA4'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
5.4406 × 10-5-1
LHCA4'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
7.5894 × 10-51
LHCA4'21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 avrRpm1'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.6763 × 10-4-1
LHCA4'after cold treatment at 4 degrees Celsius' vs 'before cold treatment'growth conditionTranscription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level
Adjusted p-valueLog2-fold change
2.0463 × 10-41
LHCA4'120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
7.5435 × 10-4-1
LHCA4'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
8.2691 × 10-41
LHCA4'continuous red light' vs 'complete darkness' at '45 min'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
2.3125 × 10-31
LHCA4'continuous white light' vs 'complete darkness' at '45 min'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
5.6069 × 10-3-1
LHCA4'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
9.1586 × 10-3-1
LHCA4'WER::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
9.1621 × 10-3-1
LHCA4'gtl1-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis trichome from 5th and 6th rosette leaves of gtl1-1 mutant and wild type controls
Adjusted p-valueLog2-fold change
1.1934 × 10-21
LHCA4'1 min red light pulse + 44 min darkness' vs 'complete darkness' at '45 min'growth conditionTranscription profiling by array of Arabidopsis after different light treatments
Adjusted p-valueLog2-fold change
3.9541 × 10-21
LHCA4'iaa32; iaa34' vs 'wild type genotype'genotypeTMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.3785 × 10-2-1
LHCA4'tcx2; TMO5:3xGFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant