AT3G54940 (RD19D)

arabidopsis thaliana

Probable cysteine protease RD19D

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
4.8377 × 10-97.5
AT3G54940'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.6517 × 10-215.9
AT3G54940'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
2.2929 × 10-4-5.8
AT3G54940'atbzip16; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'atbzip16; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
9.7925 × 10-7-5.7
AT3G54940'abi3-6 mutant' vs 'wild type' in '16 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
2.0366 × 10-45.7
AT3G54940'phyABCDE quintuple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, lightTranscription profiling by array of Arabidopsis mutants lacking all phytochromes in response to red light exposure
00
Log2-fold change
5.6
AT3G54940'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.8295 × 10-75.2
AT3G54940'sucrose; 1 percent' vs 'none' in 'RBRcs mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
3.7033 × 10-175
AT3G54940'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.1679 × 10-1484.9
AT3G54940'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
5.9592 × 10-54.7
AT3G54940'pkr2 pkl' vs 'wild type'genotypeTranscription profiling of Arabidopsis pickle mutants
Adjusted p-valueLog2-fold change
1.1791 × 10-24.7
AT3G54940'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
1.9657 × 10-3-4.6
AT3G54940'long day length regimen' at '3 day' vs 'none' at '0 day'growth condition, timeAnalysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and an LRR protein that promotes flowering
Adjusted p-valueLog2-fold change
1.2073 × 10-1824.5
AT3G54940'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.2557 × 10-10-4.5
AT3G54940'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
2.2638 × 10-24.5
AT3G54940'tcx2; TMO5:3xGFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
1.6866 × 10-11-4.3
AT3G54940'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
4.9238 × 10-10-4.3
AT3G54940'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
7.7773 × 10-34.2
AT3G54940'phyABDE quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, lightTranscription profiling by array of Arabidopsis mutants lacking all phytochromes in response to red light exposure
Adjusted p-valueLog2-fold change
1.5843 × 10-134.1
AT3G54940'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.7161 × 10-3-3.7
AT3G54940'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
1.3527 × 10-683.6
AT3G54940'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
2.9746 × 10-23.6
AT3G54940'14 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
5.7254 × 10-123.4
AT3G54940'gul2-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
3.0474 × 10-23.4
AT3G54940'35S::MIF1; dark' vs 'empty pRR2222 vector; dark'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.5041 × 10-73.3
AT3G54940'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
2.5595 × 10-83.2
AT3G54940'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
5.498 × 10-7-3.2
AT3G54940'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
4.5967 × 10-63.2
AT3G54940'35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar'compound, genotypeMicroarray designed to find PIN polarity regulators downstream of TIR1/AFB
Adjusted p-valueLog2-fold change
7.504 × 10-623.1
AT3G54940'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
4.3284 × 10-23.1
AT3G54940'35S::MIF1; dark' vs '35S::MIF1; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.6844 × 10-102.9
AT3G54940'gul2-1 bri1-5 double mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
4.299 × 10-10-2.9
AT3G54940'tt2 mutant' vs 'wild type genotype'genotypeGene expression profiling by array of Arabidopsis tt2 mutant
Adjusted p-valueLog2-fold change
1.6051 × 10-6-2.9
AT3G54940'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
8.3769 × 10-62.9
AT3G54940'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
9.5625 × 10-62.9
AT3G54940'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
3.8766 × 10-52.9
AT3G54940'mdh mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for mdh
Adjusted p-valueLog2-fold change
5.1527 × 10-42.9
AT3G54940'apl mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls
Adjusted p-valueLog2-fold change
7.1315 × 10-42.9
AT3G54940'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
4.8057 × 10-42.8
AT3G54940'4 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
5.3137 × 10-42.8
AT3G54940'abscisic acid 2 micromolar' vs 'control' in 'SNRK3.15 expression'growth condition, phenotypeTranscription profiling of DEX-inducible SNRK3.15 Arabidopsis seedlings in the presence of ABA
Adjusted p-valueLog2-fold change
1.9408 × 10-9-2.7
AT3G54940'abi3-6 mutant' vs 'wild type' in '12 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
3.7674 × 10-82.6
AT3G54940'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
1.5691 × 10-5-2.6
AT3G54940'arf6-2, arf8-3 double mutant' vs 'wild type' at 'flowering stage'developmental stage, genotypeTranscription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant
Adjusted p-valueLog2-fold change
2.245 × 10-32.6
AT3G54940'abscisic acid 2 micromolar' vs 'control' in 'no SNRK3.15 expression'growth condition, phenotypeTranscription profiling of DEX-inducible SNRK3.15 Arabidopsis seedlings in the presence of ABA
Adjusted p-valueLog2-fold change
1.3823 × 10-4-2.5
AT3G54940'myb21-5, myb24-5 double mutant' vs 'wild type' at 'flowering stage'developmental stage, genotypeTranscription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant
Adjusted p-valueLog2-fold change
5.5077 × 10-42.5
AT3G54940'pkl' vs 'wild type'genotypeTranscription profiling of Arabidopsis pickle mutants
Adjusted p-valueLog2-fold change
1.6677 × 10-22.5
AT3G54940'rrd2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis temperature-dependent later root fasciation mutants
Adjusted p-valueLog2-fold change
1.0558 × 10-32.4
AT3G54940'35 micromolar; N-lauroylethanolamine (NAE(12:0))' vs '0.05 percent; DMSO'compoundTranscription profiling of Arabidopsis seedlings treated with NAE(12:0)
Adjusted p-valueLog2-fold change
1.0886 × 10-22.4
AT3G54940'abscisic acid; 20 micromolar' vs 'none' in 'endosperm'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
3.6094 × 10-392.3
AT3G54940'10 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.725 × 10-4-2.3
AT3G54940'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
6.9306 × 10-42.3
AT3G54940'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.4206 × 10-32.3
AT3G54940'pab2 pab8; polysomal RNA' vs 'wild type; polysomal RNA'RNA, genotypePAB/WT polysome loading and transcript levels (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
1.4894 × 10-3-2.3
AT3G54940'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'C24'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
2.3762 × 10-3-2.3
AT3G54940'sps1' vs 'wild type'genotypeExpression data from 10-days old dark grown Arabidopsis seedlings of wild type (Col-0), sps1 line and L17 line.
Adjusted p-valueLog2-fold change
1.4332 × 10-62.2
AT3G54940'PIF5 overexpressing; high red/far-red light ratio' vs 'wild type; high red/far-red light ratio'genotype, treatmentPhytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light
Adjusted p-valueLog2-fold change
1.1219 × 10-42.2
AT3G54940'RBRcs mutant' vs 'wild type' in 'none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
2.198 × 10-4-2.2
AT3G54940'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.0691 × 10-2-2.2
AT3G54940'cry1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cry1 or hfr1
Adjusted p-valueLog2-fold change
1.1237 × 10-42.1
AT3G54940'pab2 pab8; total RNA' vs 'wild type; total RNA'RNA, genotypePAB/WT polysome loading and transcript levels (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
2.1563 × 10-42.1
AT3G54940'pp7l-1 loss of function mutant' vs 'wild type genotype'genotypeSERINE/THREONINE-PROTEIN PHOSPHATASE7-LIKE PP7L Regulates Chloroplast Development
Adjusted p-valueLog2-fold change
1.5328 × 10-3-2.1
AT3G54940'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
7.1445 × 10-24-2
AT3G54940'fpa-7 loss of function mutant' vs 'wild type genotype'genotypeGene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis thaliana seedlings
Adjusted p-valueLog2-fold change
2.4602 × 10-62
AT3G54940'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
1.7556 × 10-32
AT3G54940'abscisic acid' vs 'ethanol'compoundTranscription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea
Adjusted p-valueLog2-fold change
4.2709 × 10-61.9
AT3G54940'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
4.1717 × 10-4-1.9
AT3G54940'strigolactone GR24; 2.5 micromolar' vs 'DMSO'compoundTranscription profiling by array of Arabidosis seeds after treatment with EL6 and GR24 to investigate the effect on germination
Adjusted p-valueLog2-fold change
5.33 × 10-41.9
AT3G54940'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
5.7738 × 10-41.9
AT3G54940'35S-CalMV::Zat12 mutant' vs 'wild type' in 'no compound'genotype, growth conditionTranscription profiling by array of Arabidopsis over-expressing Zat12 after treatment with hydrogen peroxide
Adjusted p-valueLog2-fold change
3.9813 × 10-31.9
AT3G54940'35S-CalMV::Zat12 mutant' vs 'wild type' in 'hydrogen peroxide'genotype, growth conditionTranscription profiling by array of Arabidopsis over-expressing Zat12 after treatment with hydrogen peroxide
Adjusted p-valueLog2-fold change
5.3214 × 10-51.8
AT3G54940'gun1-103 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
2.1184 × 10-21.8
AT3G54940'5 micromolar gibberellin' vs 'water' at 30 minutegrowth condition, timeTranscription profiling by array of Arabidopsis expressing PcGA2ox1 after treatment with gibberellin
Adjusted p-valueLog2-fold change
1.5199 × 10-61.7
AT3G54940'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '1 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '1 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
2.3846 × 10-61.7
AT3G54940'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
7.822 × 10-31.7
AT3G54940'pab2 pab8; nonpolysomal RNA' vs 'wild type; nonpolysomal RNA'RNA, genotypePAB/WT polysome loading and transcript levels (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
4.9002 × 10-21.7
AT3G54940'gct-2' vs 'wild type'genotypeThe Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions.
Adjusted p-valueLog2-fold change
2.8607 × 10-31.6
AT3G54940'PIF5 overexpressing; low red/far-red light ratio' vs 'wild type; low red/far-red light ratio'genotype, treatmentPhytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light
Adjusted p-valueLog2-fold change
2.474 × 10-7-1.5
AT3G54940'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
8.2874 × 10-7-1.5
AT3G54940'lec1-1 mutant' vs 'wild type' in '8 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
3.3759 × 10-41.5
AT3G54940'dcl1-15 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type and dcl1-15 torpedo-staged embryos
Adjusted p-valueLog2-fold change
1.1913 × 10-31.5
AT3G54940'dicamba; 7 millimolar' vs 'none'compoundTranscription profiling by array of Arabidopsis after treatment with dicamba
Adjusted p-valueLog2-fold change
4.1302 × 10-31.5
AT3G54940'fug1-3 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
2.2079 × 10-21.5
AT3G54940'cct-1' vs 'wild type'genotypeThe Arabidopsis Mediator CDK8 module genes CCT and GCT are global regulators of developmental phase transitions.
Adjusted p-valueLog2-fold change
1.293 × 10-51.4
AT3G54940'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '3 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
2.3773 × 10-41.4
AT3G54940'pif1pif3pif4pif5 (pifq) mutant; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour' vs 'wild type; 3 days in continuous light plus Red/Far-Red ratio 0.006' at '0 hour'genotype, light, timeExpression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings
Adjusted p-valueLog2-fold change
1.1436 × 10-21.4
AT3G54940'pvip1; pvip2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for pvip1 and pvip2
Adjusted p-valueLog2-fold change
1.6073 × 10-21.4
AT3G54940'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
3.0332 × 10-21.4
AT3G54940'mbd11 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.4758 × 10-21.4
AT3G54940'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
9.5894 × 10-9-1.3
AT3G54940'bdr1; brd2; brd3 triple loss of function mutant' vs 'wild type genotype'genotypeGene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis thaliana seedlings
Adjusted p-valueLog2-fold change
1.3431 × 10-71.3
AT3G54940'arr21c overexpressing line' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing arr21c
Adjusted p-valueLog2-fold change
1.4827 × 10-41.3
AT3G54940'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
4.6639 × 10-4-1.3
AT3G54940'nano-titania; 500 milligram per liter' vs 'potassium chloride; 0.1 molar'compoundExpression data from 12-day old Arabidopsis germinants
Adjusted p-valueLog2-fold change
6.8053 × 10-31.3
AT3G54940'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
4.6158 × 10-21.3
AT3G54940'100 micromolar; fenclorim' vs 'control' at '4 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
3.532 × 10-10-1.2
AT3G54940'pkl mutant; uniconazole' vs 'pkl mutant; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
3.3396 × 10-91.2
AT3G54940'8 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
7.8967 × 10-7-1.2
AT3G54940'lec1-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
1.6511 × 10-41.2
AT3G54940'sodium chloride; 120 millimolar' vs 'control; 0 millimolar' in 'rsa1-1 mutant' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
3.0164 × 10-41.2
AT3G54940'phosphate-lacking medium' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
2.0929 × 10-3-1.2
AT3G54940'4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type'genotype, growth conditionGene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
Adjusted p-valueLog2-fold change
3.5713 × 10-3-1.2
AT3G54940'L17 phyA' line' vs 'wild type'genotypeExpression data from 10-days old dark grown Arabidopsis seedlings of wild type (Col-0), sps1 line and L17 line.
Adjusted p-valueLog2-fold change
6.9279 × 10-31.2
AT3G54940'pft1-1; 23 degree celsius' vs 'wild type; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
2.8386 × 10-21.2
AT3G54940'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
2.9868 × 10-2-1.2
AT3G54940'ire1a/ire1b' vs 'wild type' in 'tunicamycin 5 milligram per liter'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ire1 after treatment with tunicamycin
Adjusted p-valueLog2-fold change
5.4277 × 10-31.1
AT3G54940'dexamethasone' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
1.7284 × 10-21.1
AT3G54940'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Fei-0'compound, ecotype, timeTranscription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
2.3615 × 10-2-1.1
AT3G54940'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
2.8928 × 10-21.1
AT3G54940'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
2.1516 × 10-4-1
AT3G54940'fus3-3 mutant' vs 'wild type' in '12 day; Col-0'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
7.1187 × 10-41
AT3G54940'rsa1-1 mutant' vs 'wild type' in 'sodium chloride; 120 millimolar' at '24 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis rsa1-1 mutants under salt stress
Adjusted p-valueLog2-fold change
1.1868 × 10-31
AT3G54940'fip37-4 LEC1:FIP37' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings
Adjusted p-valueLog2-fold change
6.7637 × 10-31
AT3G54940'CPL4RNAi' vs 'wild type genotype'genotypeSalt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana [CPL4(Oto)]
Adjusted p-valueLog2-fold change
9.2352 × 10-3-1
AT3G54940'frs7-1;frs12-1' vs 'wild type genotype' in 'ZT8'genotype, timeRNA-seq analysis of frs7;frs12 (frsD) double loss-of function lines at different times of the day ZT8 (2pm) and ZT16 (10pm).