8.1 | | AT3G57260 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
7.5 | | AT3G57260 | 'ceh1 mutant' vs 'wild type' | genotype | Transcriptome of Arabidopsis thaliana ceh1 mutant |
6.9 | | AT3G57260 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
6.9 | | AT3G57260 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-6.7 | | AT3G57260 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
6.7 | | AT3G57260 | 'MYB96 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants |
6.7 | | AT3G57260 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
6 | | AT3G57260 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
5.9 | | AT3G57260 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
5.8 | | AT3G57260 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
5.6 | | AT3G57260 | 'mkk2 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk2 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
5.6 | | AT3G57260 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
5.5 | | AT3G57260 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
5.5 | | AT3G57260 | "rps10 RNAi; late onset of silencing (P3)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
5.5 | | AT3G57260 | 'cabbage leaf curl virus infected' vs 'mock infected' | infect | Transcription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus |
-5.5 | | AT3G57260 | 'nudt7-1 sid2-1 eds1-2' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
-5.4 | | AT3G57260 | 'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control' | genotype | Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 |
5.2 | | AT3G57260 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
5.2 | | AT3G57260 | 'Turnip mosaic virus' vs 'mock' in 'zone 0' | infect, sampling site | Transcription profiling by of Arabidopsis leaves after infection with Potyvirus turnip mosaic virus |
-5.2 | | AT3G57260 | 'nudt7-1 eds1-2' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
5.1 | | AT3G57260 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
5.1 | | AT3G57260 | 'pvip1;pvip2' vs 'none' | rnai, RNA interference | Transcription profiling by array of Arabidopsis after RNAi-mediated knock-down of pvip1 and pvip2 |
5.1 | | AT3G57260 | 'wild_type; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
5.1 | | AT3G57260 | 'powdery mildew infected' vs 'uninfected' in 'syringolin; 20 micromolar' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
5 | | AT3G57260 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
4.8 | | AT3G57260 | 'mkk1 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk1 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
4.7 | | AT3G57260 | 'sid2-1 mutant; Pseudomonas syringae pv. maculicola str. ES4326' vs 'sid2-1 mutant; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
-4.7 | | AT3G57260 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; Alternaria brassicicola' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
4.6 | | AT3G57260 | 'ddm1 mutant' vs 'wild type genotype' | genotype | Gene expression in Arabidopsis ddm1 mutants with high levels of Transposable Element activity |
4.5 | | AT3G57260 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
4.5 | | AT3G57260 | 'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type' | genotype | Transcriptome profiling of LecRKVI.2 over-expressor plants. |
4.5 | | AT3G57260 | 'Piereis brassicae; eggs only' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-4.4 | | BGL2 | 'dja6; dja5 double mutant' vs 'wild type genotype' | genotype | RNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana |
4.4 | | AT3G57260 | 'sni-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for sni1 |
4.4 | | AT3G57260 | "rps10 RNAi; early onset of silencing (P2)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
4.3 | | AT3G57260 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
4.3 | | AT3G57260 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
4.3 | | AT3G57260 | 'Erysiphe orontii' vs 'none' at '120 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
4.3 | | AT3G57260 | '2,6-dichloroisonicotinic acid' vs 'none' in 'wild type' at '6 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
4.2 | | AT3G57260 | 'rlk1 mutant' vs 'wild type' in 'water' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for rlk1 after treatment with chitooctaose |
4.2 | | AT3G57260 | 'siz1-3' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
4.2 | | AT3G57260 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
4.2 | | AT3G57260 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
4.2 | | AT3G57260 | 'low phosphate' vs 'control' in 'none; wild type' | compound, genotype, growth condition | Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes |
-4.2 | | AT3G57260 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
4.1 | | AT3G57260 | 'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Tsu-1' ecotype | ecotype, organism part, growth condition, time | Transcription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium |
4.1 | | AT3G57260 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
4.1 | | AT3G57260 | 'Plasmodiophora brassicae' vs 'none' at '23 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
-4.1 | | AT3G57260 | '0.1 mM nitrate' vs '10 mM nitrate' in 'wild type genotype' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
4.1 | | AT3G57260 | 'C3H15 overexpressor' vs 'wild type' | genotype | Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type |
4 | | AT3G57260 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
4 | | AT3G57260 | '2,6-dichloroisonicotinic acid' vs 'none' in 'wild type' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
3.9 | | AT3G57260 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3.9 | | AT3G57260 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
3.9 | | AT3G57260 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
3.9 | | AT3G57260 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
3.9 | | AT3G57260 | 'Cax1/Cax3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cax1/cax3 double mutants |
3.8 | | AT3G57260 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
3.8 | | AT3G57260 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
-3.8 | | AT3G57260 | 'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
3.8 | | AT3G57260 | 'wild type; Golovinomyces orontii infection' vs 'wild type; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
-3.7 | | AT3G57260 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
3.7 | | AT3G57260 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
3.7 | | AT3G57260 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-3.6 | | AT3G57260 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
3.6 | | AT3G57260 | 'cs26 mutant' vs 'wild type' in 'long day photoperiod' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods |
-3.5 | | AT3G57260 | 'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
-3.5 | | AT3G57260 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
3.5 | | AT3G57260 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
-3.5 | | AT3G57260 | 'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3.4 | | AT3G57260 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
3.4 | | AT3G57260 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3.4 | | AT3G57260 | 'tga2;tga5;tga6 mutant; 12-oxo-phytodienoic acid' vs 'Col-0; 12-oxo-phytodienoic acid' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid |
3.4 | | AT3G57260 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
3.4 | | AT3G57260 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
3.4 | | AT3G57260 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-3.3 | | AT3G57260 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
3.3 | | AT3G57260 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-3.3 | | AT3G57260 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '8 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
3.3 | | AT3G57260 | 'eds16 mutant; Golovinomyces orontii infection' vs 'eds16 mutant; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
3.3 | | AT3G57260 | 'ga1-3 mutant' vs 'wild type' in 'flower bud' | genotype, organism part | Transcription profiling of Arabidopsis seed and flowers of ga1-3 mutant |
-3.3 | | AT3G57260 | 'from low light to high light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
3.3 | | AT3G57260 | 'Erysiphe orontii' vs 'none' at '96 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
-3.2 | | AT3G57260 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
3.2 | | AT3G57260 | 'pdx3-3 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
3.2 | | AT3G57260 | 'powdery mildew' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
3.2 | | AT3G57260 | 'gapcp mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for gapcp |
-3.2 | | AT3G57260 | 'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
3.2 | | AT3G57260 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
3.1 | | AT3G57260 | 'abi4 vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
3.1 | | AT3G57260 | 'vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
3.1 | | AT3G57260 | 'scrm-D' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
3.1 | | AT3G57260 | 'nhx5-2/nhx6-2 knock outs' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
3.1 | | AT3G57260 | '5 day; naphthaleneacetic acid' vs '2 day; naphthaleneacetic acid' in 'stem tissue' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid |
-3 | | AT3G57260 | 'sodium sulfide; des1' vs 'water; des1' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
-3 | | AT3G57260 | 'cs26 mutant' vs 'wild type' in 'short day photoperiod' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods |
-3 | | AT3G57260 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 5 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
3 | | AT3G57260 | 'edr1 mutant' vs 'wild type' in 'Golovinomyces cichoracearum' at '18 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
3 | | AT3G57260 | 'pmr5 pmr6 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
3 | | AT3G57260 | 'pkl-1' vs 'wild type' | genotype | Identify differentially expressed genes in 14-day-old pkl seedlings |
3 | | AT3G57260 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.9 | | AT3G57260 | 'pipecolic acid; 10 micromolar' vs 'none' in 'wild type genotype' | block, compound, genotype | Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid |
2.9 | | AT3G57260 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.9 | | AT3G57260 | 'chr11-1 chr17-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis chr11-1 chr17-1 mutants |
-2.9 | | AT3G57260 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
2.9 | | AT3G57260 | 'letm1-2 homozygous, letm2-1 heterozygous double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
-2.9 | | AT3G57260 | 'oxt6 mutant' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
2.9 | | AT3G57260 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-2.9 | | AT3G57260 | '35S::C2' vs 'control' in 'methyl jasmonate' | compound, genotype | Transcription profiling by array of Arabidopsis expressing genimivirus C2 under the control of the 35S promoter after treatment with methyl jasmonate |
-2.9 | | AT3G57260 | 'dexamethasone; 10 micromolar' vs 'none' | compound | Genome-wide analysis of genes regulated by ARR22 overexpression. |
2.9 | | AT3G57260 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
2.9 | | AT3G57260 | 'met1 mutant' vs 'wild type' at '6 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
2.9 | | AT3G57260 | 'total RNA; turnip mosaic virus inoculated' vs 'total RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
2.9 | | AT3G57260 | 'CAP-D3 mutant line SAIL_826_B06' vs 'wild type genotype' | genotype | Influence of CAP-D3 in Arabidopsis thaliana transcription |
2.9 | | AT3G57260 | 'fdh-3940 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis mutant for bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) against wild-type controls |
2.8 | | AT3G57260 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
2.8 | | AT3G57260 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-2.8 | | AT3G57260 | 'fmo1 mutant' vs 'wild type genotype' in 'pipecolic acid; 10 micromolar' | block, compound, genotype | Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid |
2.8 | | AT3G57260 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.8 | | AT3G57260 | 'rlt1-1 rlt2-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis rlt1-1 rlt2-1 mutants |
2.8 | | AT3G57260 | 'met1 mutant' vs 'wild type' at '0 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
2.8 | | AT3G57260 | 'abi4-102' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
2.8 | | AT3G57260 | 'ozone' vs 'control' in 'wild type' at '48 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis G-protein knockout plants in response to ozone |
2.8 | | AT3G57260 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.8 | | AT3G57260 | '4 degree celsius' vs '20 degree celsius' in 'Rschew' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.7 | | AT3G57260 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
2.7 | | AT3G57260 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wild type; Botrytis cinerea 2100' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
2.7 | | AT3G57260 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.7 | | AT3G57260 | 'siz1-3' vs 'wild type' in 'drought' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
2.7 | | AT3G57260 | '96h' vs '48h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
2.7 | | AT3G57260 | 'polysomal RNA; turnip mosaic virus inoculated' vs 'polysomal RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
2.7 | | AT3G57260 | 'triazolopyrimidine' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with triazolopyrimidine |
2.7 | | AT3G57260 | 'ozone' vs 'control' in 'G-protein knockout mutant' at '48 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis G-protein knockout plants in response to ozone |
2.7 | | AT3G57260 | 'nudt7-1 sid2-1' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
2.6 | | AT3G57260 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
2.6 | | AT3G57260 | 'water; des1' vs 'water; wild type' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
2.6 | | AT3G57260 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '30 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
2.6 | | AT3G57260 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.6 | | AT3G57260 | 'C24; fry1-1' vs 'C24; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
2.6 | | AT3G57260 | 'C3H14 overexpressor' vs 'wild type' | genotype | Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type |
2.6 | | AT3G57260 | 'camta1/2 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2.5 | | AT3G57260 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
2.5 | | AT3G57260 | 'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Salicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants. |
2.5 | | AT3G57260 | 'spx1,spx2 double mutant' vs 'wild type' in 'complete medium' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
2.5 | | AT3G57260 | 'clf28 mutant' vs 'wild type' in 'silique' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
2.5 | | AT3G57260 | 'AT4G01050 knock out' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis TROL knock-out plants |
2.5 | | AT3G57260 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.5 | | AT3G57260 | 'MtNPF1.7 expression' vs 'wild type genotype' in '0.1 mM nitrate' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
2.5 | | AT3G57260 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
2.5 | | AT3G57260 | 'pmr6 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
2.5 | | AT3G57260 | 'Rhizoctonia solani AG8' vs 'mock' | infect | Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1 |
2.5 | | AT3G57260 | '4 degree celsius' vs '20 degree celsius' in 'Columbia-0' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-2.4 | | AT3G57260 | 'brm-1 ref6-1' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis |
-2.4 | | AT3G57260 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.4 | | AT3G57260 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
2.4 | | AT3G57260 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.4 | | AT3G57260 | '12 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
2.4 | | AT3G57260 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
-2.4 | | AT3G57260 | 'drought; abi1td' at '0 hour' vs 'drought; wild type' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-2.4 | | AT3G57260 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
2.4 | | AT3G57260 | 'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.4 | | AT3G57260 | 'ASL9 overexpressor' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing ASL9 |
2.3 | | AT3G57260 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.3 | | AT3G57260 | 'drought environment' vs 'none' in 'ahl10-1' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
-2.3 | | AT3G57260 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
2.3 | | AT3G57260 | 'benzothiadiazole' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis overexpressing mil4 after treatment with benzothiadiazole |
2.3 | | AT3G57260 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.3 | | AT3G57260 | 'hyl1; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
2.3 | | AT3G57260 | 'powdery mildew' vs 'none' in 'pmr4-1' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
2.3 | | AT3G57260 | 'agb1-1 mutant' vs 'wild type' in 'Plectosphaerella cucumerina inoculation' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
2.3 | | AT3G57260 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.3 | | AT3G57260 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
2.3 | | AT3G57260 | '96h' vs '48h' | organism part, time | Transcription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light |
2.3 | | AT3G57260 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.3 | | AT3G57260 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
2.3 | | AT3G57260 | 'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.2 | | AT3G57260 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
2.2 | | AT3G57260 | 'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
2.2 | | AT3G57260 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.2 | | AT3G57260 | '2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
-2.2 | | AT3G57260 | 'rice OsTOP6A1 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing rice OsTOP6A1 |
2.2 | | AT3G57260 | "leaf 8 wounded" vs "unwounded" | growth condition | Transcription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls |
2.2 | | AT3G57260 | 'E2Fa-DPa overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing E2Fa-Dpa |
-2.2 | | AT3G57260 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; Alternaria brassicicola' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.2 | | AT3G57260 | 'nhx5-1/nhx6-1 knock outs' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants |
-2.1 | | AT3G57260 | 'ref4-3; cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
2.1 | | AT3G57260 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
2.1 | | AT3G57260 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
2.1 | | AT3G57260 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
-2.1 | | AT3G57260 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.1 | | AT3G57260 | 'salicylic acid' vs 'control' in 'npr1 sni1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for npr1, sni1, ssn2 and/or brca2a after treatment with salicylic acid |
-2.1 | | AT3G57260 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-2.1 | | AT3G57260 | 'low light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
2.1 | | AT3G57260 | 'edr1 mutant' vs 'wild type' in 'Golovinomyces cichoracearum' at '36 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
-2.1 | | AT3G57260 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
2.1 | | AT3G57260 | 'pmr5 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
2.1 | | AT3G57260 | 'coi1-2 mutant' vs 'wild type genotype' in 'none' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.1 | | AT3G57260 | 'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2 | | AT3G57260 | 'Ler x C24 F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-2 | | AT3G57260 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
2 | | AT3G57260 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
2 | | AT3G57260 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-2 | | AT3G57260 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
2 | | AT3G57260 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-2 | | AT3G57260 | 'lithium chloride, 100 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
2 | | AT3G57260 | 'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
2 | | AT3G57260 | 'auxin resistant pIAA26::IAA26-P108H-GFP transgenic' vs 'control' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pIAA26::IAA26-P108H-GFP transgenic plants |
-2 | | AT3G57260 | 'PAP, 100 micromolar; lithium chloride, 100 millimolar; ATP, 1 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
2 | | AT3G57260 | '35S:LSD1-GFP' vs 'dexamethasone; 30 micromolar; 35S:LSD1-GR' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
2 | | AT3G57260 | 'sto2 mutant' vs 'wild type' | genotype | Expression profling of Arabidopsis sto2 mutant |
2 | | AT3G57260 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2 | | AT3G57260 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
2 | | AT3G57260 | 'Botrytis cinerea' vs 'none' at '48 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Botrytis cinerea |
2 | | AT3G57260 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
1.9 | | AT3G57260 | 'anac017 loss of function mutant' vs 'wild type genotype' | genotype | Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq] |
-1.9 | | AT3G57260 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
1.9 | | AT3G57260 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.9 | | AT3G57260 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.9 | | AT3G57260 | 'Phytophthora parasitica' vs 'none' in 'wild type genotype' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
1.9 | | AT3G57260 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
1.9 | | AT3G57260 | 'OsSAP11 transgenic' vs 'wild type' | genotype | Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants |
-1.9 | | AT3G57260 | '2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.9 | | AT3G57260 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wild type' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
1.9 | | AT3G57260 | 'ambient carbon dioxide 48h' vs 'ambient carbon dioxide 24h' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels |
1.9 | | AT3G57260 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.9 | | AT3G57260 | '16 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
1.9 | | AT3G57260 | 'antimycin A; 50 micromolar' vs 'water' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1.9 | | AT3G57260 | 'ga1-3 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-1.8 | | AT3G57260 | 'C24 x Ler F1 hybrid' vs 'C24 ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
1.8 | | AT3G57260 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-1.8 | | AT3G57260 | 'FRI wild type, flc mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
1.8 | | AT3G57260 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
-1.8 | | AT3G57260 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
1.8 | | AT3G57260 | 'Bla-1 x Hh-0' vs 'Hh-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
1.8 | | AT3G57260 | 'double mutant APK1/APK2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for apk1 and apk2 |
1.8 | | AT3G57260 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.8 | | AT3G57260 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1.8 | | AT3G57260 | 'pao-1 mutant' vs 'wild type genotype' in 'none' at '0 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
1.8 | | AT3G57260 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.8 | | AT3G57260 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1.8 | | AT3G57260 | 'ozone 500 parts per billion' vs 'control' | growth condition | Functional Genomics of Ozone Stress in Arabidopsis. |
1.8 | | AT3G57260 | 'ozone 500 parts per billion' vs 'control' | growth condition | Arabidopsis thaliana response to ozone |
-1.8 | | AT3G57260 | 'SWP73A overexpression' vs 'wild type genotype' | genotype | Microarray analysis of gene expression level in wild type and SWP73A overexpression Arabidopsis |
1.8 | | AT3G57260 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.8 | | AT3G57260 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
1.8 | | AT3G57260 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
-1.8 | | AT3G57260 | 'ron2-1 knockout' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ron2-1 knockout mutant |
1.8 | | AT3G57260 | 'bhlh100/101 double mutant' vs 'wild type' in 'none; shoot' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
1.8 | | AT3G57260 | '20 hour (light)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
1.8 | | AT3G57260 | 'drought; abi1td' at '0 hour' vs 'control; abi1td' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-1.8 | | AT3G57260 | 'Atwrky12-2' vs 'wild type' | genotype | Gene expression profiling of Arabidopsis Atwrky12 mutants stems |
-1.8 | | AT3G57260 | 'Atwrky12-1' vs 'wild type' | genotype | Gene expression profiling of Arabidopsis Atwrky12 mutants stems |
-1.8 | | AT3G57260 | 'hai1-2 mutant' vs 'wild type' in 'low water potential stress' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-1.8 | | AT3G57260 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.8 | | AT3G57260 | 'drought' vs 'control' at '12:00' | growth condition, time | Transcription profiling by array of Arabidopsis after drought conditions sampled at different times of day |
-1.8 | | AT3G57260 | 'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
-1.7 | | AT3G57260 | 'fri flc double mutant' vs 'wild type' in '32 day' | age, genotype | Transcription profiling by array of Arabidopsis with different genotypes for flowering locus C and frigida after flowering induction |
1.7 | | AT3G57260 | 'imidazolinone' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with imidazolinone |
-1.7 | | AT3G57260 | 'LBD37 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
-1.7 | | AT3G57260 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
1.7 | | AT3G57260 | 'hst-15 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
1.7 | | AT3G57260 | 'pdx3-4 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
1.7 | | AT3G57260 | 'ANAC017 OEa' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.7 | | AT3G57260 | 'low water potential stress' vs 'control' in 'hai1-2 mutant' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
1.7 | | AT3G57260 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
-1.7 | | AT3G57260 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.7 | | AT3G57260 | 'Erysiphe orontii' vs 'none' at '72 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
-1.7 | | AT3G57260 | 'beta-estradiol; CHLM overexpression' vs 'beta-estradiol; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
1.7 | | AT3G57260 | 'wild type; Botrytis cinerea 2100' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
1.7 | | AT3G57260 | 'ein2 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-1.7 | | AT3G57260 | 'stunted msh1' vs 'wild type' | RNA interference | Transcript profiling of Arabidopsis msh1 mutants |
1.7 | | AT3G57260 | 'edr1 mutant' vs 'wild type' in 'none' at '0 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
-1.7 | | AT3G57260 | 'ire1a/ire1b' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ire1 after treatment with tunicamycin |
-1.7 | | AT3G57260 | '35S::amiRAP2.2-12' vs 'wild type' in 'hypoxia' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing RAP2.12 or with RAP2.12 and RAP2.2 silenced after growth in hypoxic conditions |
1.7 | | AT3G57260 | 'ein2-1; untreated' at '0 hour' vs 'wild type; untreated' at '0 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-1.7 | | AT3G57260 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1.7 | | AT3G57260 | 'rao1-1 mutant' vs 'wild type' in 'water' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1.6 | | AT3G57260 | 'dexamethasone; 15 micromolar' vs 'none' | compound | RNA-seq to investigate Auxin responsive genes in the Arabidopsis stem |
1.6 | | AT3G57260 | 'swp73b-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis swp73b-1 mutant |
1.6 | | AT3G57260 | '35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
-1.6 | | AT3G57260 | 'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1.6 | | AT3G57260 | 'tink/ibr5-6' vs 'wild type' | genotype | Transcription profiling by array of the tinkerbell (tink) mutation of Arabidopsis. |
1.6 | | AT3G57260 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '60 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1.6 | | AT3G57260 | 'axr3-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.6 | | AT3G57260 | 'camta1/2/3 mutant; grown at 22 C and treated at 4 C for 24 hours' vs 'wild type; grown at 22 C and treated at 4 C for 24 hours' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
-1.6 | | AT3G57260 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
1.6 | | AT3G57260 | 'OsRLCK253 transgenic' vs 'wild type' | genotype | Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants |
-1.6 | | AT3G57260 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1.6 | | AT3G57260 | 'ANAC017 OEb' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.6 | | AT3G57260 | 'pnp1-1' vs 'wild type' in 'full nutrient medium' at '168 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
1.6 | | AT3G57260 | 'ambient carbon dioxide 96h' vs 'ambient carbon dioxide 48h' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels |
-1.6 | | AT3G57260 | 'pvip1; pvip2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pvip1 and pvip2 |
-1.6 | | AT3G57260 | 'gai mutant' vs 'wild type' in 'flg22' at '1 hour' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
1.5 | | AT3G57260 | 'salicylic acid' vs 'none' in 'sdh1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-1.5 | | AT3G57260 | 'pepr1-1 Pepr2-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.5 | | AT3G57260 | '12h' vs '4h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
1.5 | | AT3G57260 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.5 | | AT3G57260 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.5 | | AT3G57260 | 'pmr4-1' vs 'wild type genotype' in 'none' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
1.5 | | AT3G57260 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '120 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1.5 | | AT3G57260 | 'nph4-1 arf19-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
1.5 | | AT3G57260 | 'Phytophthera infestans' vs 'none' at '24 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
1.5 | | AT3G57260 | '4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-1.5 | | AT3G57260 | '35S::C2' vs 'control' in 'no compound' | compound, genotype | Transcription profiling by array of Arabidopsis expressing genimivirus C2 under the control of the 35S promoter after treatment with methyl jasmonate |
1.5 | | AT3G57260 | 'optimum photosynthesis temperature' vs 'baseline growth temperature' | growth condition | Transcription profiling by array of Arabidopsis after growth at different temperatures |
-1.5 | | AT3G57260 | 'pop2-1 mutant' vs 'wild type' | genotype | Gene expression data from Arabidopsis wild-type and pop2-1 mutant flowers |
-1.5 | | AT3G57260 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.5 | | AT3G57260 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.5 | | AT3G57260 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development |
1.4 | | AT3G57260 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
1.4 | | AT3G57260 | 'hypoxia' vs 'control' in 'wild type' | genotype, growth condition | Expression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions |
1.4 | | AT3G57260 | 'Sphingomonas melonis Fr1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
-1.4 | | AT3G57260 | 'hy5' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
-1.4 | | AT3G57260 | 'LBD38 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
1.4 | | AT3G57260 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.4 | | AT3G57260 | 'drought' vs 'control' in 'camta1-3 mutant; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.4 | | AT3G57260 | 'agl15-4; agl18-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
1.4 | | AT3G57260 | 'sulfometuron methyl' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with sulfometuron methyl herbicide |
1.4 | | AT3G57260 | 'se-2; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
1.4 | | AT3G57260 | 'letm1-2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
-1.4 | | AT3G57260 | 'eds16 mutant; no infection' vs 'wild type; no infection' at 0 hour | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
-1.4 | | AT3G57260 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.3 | | AT3G57260 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
-1.3 | | AT3G57260 | 'drought' vs 'control' in 'camta1-3 mutant; root' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.3 | | AT3G57260 | 'gir1 mutant; none' vs 'wild type; none' in 'flower' | compound, genotype, organism part | Gene expression profile in root and flower of gir1 mutant |
1.3 | | AT3G57260 | 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant' vs 'wild type genotype' in 'none' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
-1.3 | | AT3G57260 | 'cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.3 | | AT3G57260 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.3 | | AT3G57260 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.3 | | AT3G57260 | '24h' vs '12h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
1.3 | | AT3G57260 | 'salicylic acid' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-1.3 | | AT3G57260 | 'glu1-2 mutant' vs 'wild type' in 'rosette leaf' | genotype, organism part | Transcription profiling by array of Arabidopsis mutant for Fd-GOGAT1/GLU1 |
-1.3 | | AT3G57260 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1.3 | | AT3G57260 | 'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA' | fraction, genotype, protocol | Direct RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana |
-1.3 | | AT3G57260 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1.3 | | AT3G57260 | 'trans-zeatin; 20 micromolar' vs 'control' in 'arr10 arr12 double mutant' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
1.3 | | AT3G57260 | 't-zeatin; SALK_098604, SALK_054752' vs 'DMSO; SALK_098604, SALK_054752' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
-1.3 | | AT3G57260 | 'cry1' vs 'wild type' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
-1.3 | | AT3G57260 | 'mock inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
-1.3 | | AT3G57260 | 'drought' vs 'control' at '18:00' | growth condition, time | Transcription profiling by array of Arabidopsis after drought conditions sampled at different times of day |
1.3 | | AT3G57260 | 'ESTAIG1' vs 'wild type genotype' at '0 minute' | genotype, time | Identification of mRNAs Regulated in Response to Transcriptional Activation of the Arabidopsis Abscisic Acid Insensitive Growth 1 (AIG1) Transcription Factor cDNA |
1.3 | | AT3G57260 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.3 | | AT3G57260 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1.3 | | AT3G57260 | 'drought' vs 'control' in 'wild type; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
-1.2 | | AT3G57260 | 'excess light; none; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
-1.2 | | AT3G57260 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.2 | | AT3G57260 | 'hy5' vs 'wild type' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for cry1 or hy5 after growth in high light or blue light |
1.2 | | AT3G57260 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.2 | | AT3G57260 | '12h' vs '4h' | organism part, time | Transcription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light |
-1.2 | | AT3G57260 | 'sid2 mutant' vs 'wild type' in 'water' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for mil4 and/or sid2 after treatment with benzothiadiazole |
1.2 | | AT3G57260 | 'tt4' vs 'wild type' | genotype | Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis. |
-1.2 | | AT3G57260 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
1.2 | | AT3G57260 | 'anac090 loss of function mutant' vs 'wild type genotype' | genotype | Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq] |
-1.2 | | AT3G57260 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
1.1 | | AT3G57260 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.1 | | AT3G57260 | 'vtc1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
1.1 | | AT3G57260 | 'Sphingomonas melonis Fr1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '2 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
1.1 | | AT3G57260 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '1 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-1.1 | | AT3G57260 | '24h' vs '12h' | organism part, time | Transcription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light |
1.1 | | AT3G57260 | 'anac017 T-DNA mutant' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.1 | | AT3G57260 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bay-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.1 | | AT3G57260 | 'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'sodium chloride; 50 millimolar; wild type genotype' | compound, genotype | Transcription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride |
1.1 | | AT3G57260 | 'hyl1 mutant' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for dcl1, dcl2, hen1, hst, hyl1, rdr1, rdr2, or rdr6 |
1.1 | | AT3G57260 | 'msh1 albino mutant' vs 'wild type' | genotype | Transcript profiling of Arabidopsis albino msh1 mutants |
1.1 | | AT3G57260 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
-1.1 | | AT3G57260 | 'ccr1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ccr1 mutants |
-1.1 | | AT3G57260 | 'exposed to 10 degree Celsius; wild type; 1 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
1.1 | | AT3G57260 | '48h' vs '24h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
-1.1 | | AT3G57260 | 'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.1 | | AT3G57260 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bur-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.1 | | AT3G57260 | 'AGL15 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
1.1 | | AT3G57260 | 'WOX1-2' vs 'wild type' | genotype | Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis. |
1.1 | | AT3G57260 | '35S::KLU' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis 35S::KLU shoots compared to wild type shoots |
1 | | AT3G57260 | 'rbm25-1 mutant' vs 'wild type' in 'none; 0 millimolar' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1 | | AT3G57260 | 'letm1-1 homozygous, letm2-1 heterozygous double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
-1 | | AT3G57260 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1 | | AT3G57260 | 'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'root' | growth condition, organism part | Transcriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis |
-1 | | AT3G57260 | 'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium and resupplied with Pi for 4 h' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1 | | AT3G57260 | 'actin2-5' vs 'wild type' | genotype | Actin Cytoskeleton Integrates Auxin and Brassinosteroid Signaling in Plants. |
1 | | AT3G57260 | 'ref4-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1 | | AT3G57260 | 'Rhizoctonia solani AG2-1' vs 'mock' | infect | Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1 |
1 | | AT3G57260 | 'NOG1 knockdown by siRNA' vs 'none' in 'wild type genotype' | RNA interference, genotype | Transcriptome profiling of knock mutant and RNAi lines for small GTPase, nucleolar GTP-binding protein 1 (NOG1) in Arabidopsis |
-1 | | AT3G57260 | 'chitooctaose; 1 micromolar' vs 'none' in 'erf5/6 double mutant' | compound, genotype | Comparison of gene expression profiles between erf5/6 and WT Arabidopsis in response to chitooctaose |
1 | | AT3G57260 | 'rbm25-1 mutant' vs 'wild type' in 'abscisic acid; 0.1 millimolar' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1 | | AT3G57260 | 'drought environment' vs 'none' in 'wild type genotype' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
-1 | | AT3G57260 | 'flg22' vs 'none' | stimulus | RNA-seq of Arabidopsis thaliana seedlings treated with Flg22 or Pep1 |
1 | | AT3G57260 | 'Constans mutant' vs 'wild type' | genotype | HAP5 Triple Mutant vs. Constans Mutant |
-1 | | AT3G57260 | 'psad1-1 stn7-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for psae1, psad1 or stn7, or double mutant for psae1 and stn7 or psad1 and stn7 |
1 | | AT3G57260 | 'dexamethasone; CHLD reduction' vs 'dexamethasone; control' | compound, phenotype | Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway |
1 | | AT3G57260 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1 | | AT3G57260 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1 | | AT3G57260 | 'MYB12OX' vs 'wild type' | genotype | Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis. |
1 | | AT3G57260 | '4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-1 | | AT3G57260 | 'warm/hot temperature regimen' vs 'none' in '35S:HSFA1b-RFP' | environmental stress, genotype | Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
-1 | | AT3G57260 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1 | | AT3G57260 | 'mil4 mutant' vs 'wild type' in 'water' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for mil4 and/or sid2 after treatment with benzothiadiazole |
1 | | AT3G57260 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |