6.1 | | AT3G61630 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
6 | | AT3G61630 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
5 | | AT3G61630 | 'antimycin A; 50 micromolar' vs 'water' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
4.8 | | AT3G61630 | 'antimycin A; 50 micromolar; wild type' vs 'water; wild type' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
4.7 | | AT3G61630 | 'ANAC017 OEb' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
4.7 | | AT3G61630 | '50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
4.7 | | AT3G61630 | 'sulfometuron methyl' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with sulfometuron methyl herbicide |
4.3 | | AT3G61630 | 'ANAC017 OEa' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
4.3 | | AT3G61630 | 'antimycin A; 50 micromolar' vs 'water' in 'rao1-1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
4.2 | | AT3G61630 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
4.2 | | AT3G61630 | 'antimycin A; 50 micromolar' vs 'water' in 'rao1-2 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
4.1 | | AT3G61630 | '4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
4 | | AT3G61630 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
4 | | AT3G61630 | 'cycloheximide' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
4 | | AT3G61630 | 'Columbia-0; alx8' vs 'Columbia-0; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
3.9 | | AT3G61630 | 'cycloheximide, dexamethasone' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
3.9 | | AT3G61630 | 'GO overexpression' vs 'wild type' in 'transferred to ambient CO2 concentration' at '8 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis catalase mutant and plants expressing glycolate oxidase in chloroplasts transferred to ambient CO2 concentration |
3.8 | | AT3G61630 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
3.7 | | AT3G61630 | 'glu1-2 mutant' vs 'wild type' in 'rosette leaf' | genotype, organism part | Transcription profiling by array of Arabidopsis mutant for Fd-GOGAT1/GLU1 |
3.7 | | AT3G61630 | 'apum23 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis apum23-1 mutants |
3.6 | | AT3G61630 | 'triazolopyrimidine' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with triazolopyrimidine |
3.5 | | AT3G61630 | 'imidazolinone' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with imidazolinone |
3.1 | | AT3G61630 | 'oligomycin' vs 'control' at '4 hour' | growth condition, time | Effect of oligomycin on transcript levels in Arabidopsis seedling cultures |
3.1 | | AT3G61630 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
3.1 | | AT3G61630 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
2.9 | | AT3G61630 | 'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
2.9 | | AT3G61630 | 'excess light; none; 0.5 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
2.9 | | AT3G61630 | 'antimycin A; 50 micromolar; rao2_EMS_mutant' vs 'water; rao2_EMS_mutant' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
2.8 | | AT3G61630 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2.8 | | AT3G61630 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
2.7 | | AT3G61630 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
2.7 | | AT3G61630 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
2.6 | | AT3G61630 | 'excess light; none; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
2.6 | | AT3G61630 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
2.6 | | AT3G61630 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
2.5 | | AT3G61630 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
2.5 | | AT3G61630 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
2.5 | | AT3G61630 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
2.5 | | AT3G61630 | 'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive' | genotype, phenotype | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
2.5 | | AT3G61630 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.5 | | AT3G61630 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.5 | | AT3G61630 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
2.5 | | AT3G61630 | 'C24; fry1-1' vs 'C24; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
2.4 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
2.4 | | AT3G61630 | 'antimycin A; 50 micromolar; anac017-1' vs 'water; anac017-1' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
2.4 | | AT3G61630 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-2.4 | | AT3G61630 | 'abscisic acid and dimethylthiourea' vs 'ethanol' | compound | Transcription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea |
2.3 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
2.3 | | AT3G61630 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2.3 | | AT3G61630 | 'CPL4RNAi' vs 'wild type genotype' | genotype | Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana [CPL4(Oto)] |
2.3 | | AT3G61630 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2.3 | | AT3G61630 | 'CL37' vs 'fae1 mutant' in '11 to 12 DPA' | developmental stage, genotype | RNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids |
2.3 | | AT3G61630 | 'phytoprostane A1 75 micromolar' vs 'methanol 0.5 volume percent' | compound, dose | Response of Arabidopsis cell culture to phytoprostane A1 |
2.2 | | AT3G61630 | 'atphb3 ANAC017' vs 'wild type' | age, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins |
2.2 | | AT3G61630 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
2.2 | | AT3G61630 | 'ron1-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for ron1 |
2.2 | | AT3G61630 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.2 | | AT3G61630 | 'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
2.1 | | AT3G61630 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
2.1 | | AT3G61630 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-2.1 | | AT3G61630 | 'COBL9::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
2 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-2 | | AT3G61630 | 'WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
-2 | | AT3G61630 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
2 | | AT3G61630 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
2 | | AT3G61630 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root cortex' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
-2 | | AT3G61630 | 'iron; 100 micromolar' vs 'none' in 'bhlh100/101 double mutant; shoot' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
2 | | AT3G61630 | 'constant darkness' vs 'constant white light' in 'petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
2 | | AT3G61630 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
2 | | AT3G61630 | 'pnp1-1' vs 'wild type' in 'full nutrient medium' at '168 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
-2 | | AT3G61630 | 'mbd11 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana |
-2 | | AT3G61630 | 'L-azetidine-2-carboxylic acid' vs 'L-proline' | compound, temperature | Transcription profiling by array of Arabidopsis after heat shock or treatment with tunicamycin or L-azetidine-2-carboxylic acid |
1.9 | | AT3G61630 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
1.9 | | AT3G61630 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1.9 | | AT3G61630 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
1.9 | | AT3G61630 | 'Col-0; 350 ppb ozone exposure for 2hr' vs 'Col-0; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.9 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.9 | | AT3G61630 | 'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
1.9 | | AT3G61630 | 'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.9 | | AT3G61630 | 'warm/hot temperature regimen' vs 'none' in 'wild type genotype' | environmental stress, genotype | Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
1.9 | | AT3G61630 | 'salicylic acid' vs 'none' in 'sdh1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
1.9 | | AT3G61630 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
1.9 | | AT3G61630 | 'ethanol' at '2 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1.9 | | AT3G61630 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root columella root cap' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
1.9 | | AT3G61630 | 'ANAC017 OEb' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.9 | | AT3G61630 | 'antimycin A; 50 micromolar; anac017-2' vs 'water; anac017-2' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
1.9 | | AT3G61630 | 'cabbage leaf curl virus infected' vs 'mock infected' | infect | Transcription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus |
1.9 | | AT3G61630 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.9 | | AT3G61630 | 'water deprivation' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after water deprivation |
1.9 | | AT3G61630 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1.8 | | AT3G61630 | 'warm/hot temperature regimen' vs 'none' in '35S:HSFA1b-RFP' | environmental stress, genotype | Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
1.8 | | AT3G61630 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
1.8 | | AT3G61630 | 'ethanol' at '1 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1.8 | | AT3G61630 | 'arsenic; 100 micromolar' vs 'none' in 'Ws-2' | compound, ecotype | Transcriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis |
1.8 | | AT3G61630 | 'oligomycin' vs 'control' at '1 hour' | growth condition, time | Effect of oligomycin on transcript levels in Arabidopsis seedling cultures |
1.8 | | AT3G61630 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.8 | | AT3G61630 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
1.8 | | AT3G61630 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root endodermis and quiescent center' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
1.8 | | AT3G61630 | 'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.8 | | AT3G61630 | 'photoperiod induced flowering at 22 hours' vs 'control at 22 hours' | growth condition, sampling time point | Transcription profiling by array of Arabidopsis thaliana roots following the photoperiodic induction of flowering |
1.7 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wild type' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
1.7 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
1.7 | | AT3G61630 | 'dms4 mutant' vs 'wild type' at '21 day' | age, genotype | Transcription profiling of Arabidopsis dms4-1, drd1-1 and drd1-6 mutant seedlings against wild-type to identify targets of IWR1-like transcription factor |
1.7 | | AT3G61630 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.7 | | AT3G61630 | 'constant darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
1.7 | | AT3G61630 | "rps10 RNAi; early onset of silencing (P2)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
-1.7 | | AT3G61630 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
1.6 | | AT3G61630 | 'cle40-2 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis root tip from crn-3, clv2-gabi, and cle40-2 mutants |
1.6 | | AT3G61630 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.6 | | AT3G61630 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
1.6 | | AT3G61630 | 'low light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1.6 | | AT3G61630 | 'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.6 | | AT3G61630 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
1.6 | | AT3G61630 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.6 | | AT3G61630 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
1.6 | | AT3G61630 | '10 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1.6 | | AT3G61630 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
1.6 | | AT3G61630 | 'drought' vs 'control' in 'wild type; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.6 | | AT3G61630 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
1.6 | | AT3G61630 | 'tim23 over-expression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis tim23 knock-out and over-expressing plants compared to wild-type |
1.6 | | AT3G61630 | 'bhlh100/101 double mutant' vs 'wild type' in 'none; shoot' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
1.6 | | AT3G61630 | 'hydrogen peroxide; 20 millimolar; wild type' vs 'water; wild type' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
-1.5 | | AT3G61630 | 'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.5 | | AT3G61630 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1.5 | | AT3G61630 | 'hda6 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants |
1.5 | | AT3G61630 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
1.5 | | AT3G61630 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.5 | | AT3G61630 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
1.5 | | AT3G61630 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
1.5 | | AT3G61630 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
1.5 | | AT3G61630 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
1.5 | | AT3G61630 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
-1.5 | | AT3G61630 | 'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
1.5 | | AT3G61630 | 'Pseudomonas syringae DC3000' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.5 | | AT3G61630 | 'L2.4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis expressing mutant forms of beet curly-top virus L2 protein |
-1.5 | | AT3G61630 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
1.5 | | AT3G61630 | 'iron deprivation' vs 'control' in 'wild type; rosette leaf' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for nas4x after iron deprivation |
1.4 | | AT3G61630 | 'drought stress' vs 'none' in 'control' at '2 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.4 | | AT3G61630 | 'arsenic; 200 micromolar' vs 'none' in 'Col-0' | compound, ecotype | Transcriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis |
1.4 | | AT3G61630 | 'cdkf,1-2 T-DNA insertion mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cdkf;1-2 mutant |
-1.4 | | AT3G61630 | 'rhd6 WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
1.4 | | AT3G61630 | 'low light; wild type' vs 'control; wild type' | environmental stress, genotype | Transcription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light |
1.4 | | AT3G61630 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 hrpA mutant' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
1.4 | | AT3G61630 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.4 | | AT3G61630 | '100 micromolar; fenclorim' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1.4 | | AT3G61630 | 'dehydration stress' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.4 | | AT3G61630 | 'syringolin; 20 micromolar' vs 'none' in 'powdery mildew infected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.4 | | AT3G61630 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
1.4 | | AT3G61630 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
1.4 | | AT3G61630 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-1.4 | | AT3G61630 | 'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
1.4 | | AT3G61630 | 'sid2-1 mutant; Pseudomonas syringae pv. maculicola str. ES4326' vs 'sid2-1 mutant; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
1.4 | | AT3G61630 | '100 micromolar; fenclorim' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1.4 | | AT3G61630 | 'MtNPF1.7 expression' vs 'wild type genotype' in '0.1 mM nitrate' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
1.4 | | AT3G61630 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root stele' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
1.4 | | AT3G61630 | 'edm2-2 mutant' vs 'wild type' | genotype | Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition |
1.4 | | AT3G61630 | '2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide' vs 'none' | compound | Expression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO |
1.4 | | AT3G61630 | '35S::C2' vs 'control' in 'methyl jasmonate' | compound, genotype | Transcription profiling by array of Arabidopsis expressing genimivirus C2 under the control of the 35S promoter after treatment with methyl jasmonate |
-1.3 | | AT3G61630 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
1.3 | | AT3G61630 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1.3 | | AT3G61630 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1.3 | | AT3G61630 | 'ANAC017 OEa' vs 'wild type genotype' at '3 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
1.3 | | AT3G61630 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
1.3 | | AT3G61630 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
1.3 | | AT3G61630 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1.3 | | AT3G61630 | '5 min UV-A/B light pulse + 4 h darkness' vs 'complete darkness' at '4 h' | growth condition | Transcription profiling by array of Arabidopsis after different light treatments |
1.3 | | AT3G61630 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.3 | | AT3G61630 | 'abi3-6 mutant' vs 'wild type' in '16 day' | age, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2] |
-1.3 | | AT3G61630 | '8 hour (light)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
-1.3 | | AT3G61630 | '12 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
1.3 | | AT3G61630 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-1.3 | | AT3G61630 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KCl' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KCl' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
-1.3 | | AT3G61630 | '2 hr hypoxia' vs '2 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.3 | | AT3G61630 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
1.3 | | AT3G61630 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
-1.3 | | AT3G61630 | 'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light' | environmental history, genotype, sampling time point | Transcriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b |
-1.3 | | AT3G61630 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.3 | | AT3G61630 | 'spch' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
-1.3 | | AT3G61630 | 'pBeaconRFP_IAA7mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
1.3 | | AT3G61630 | 'variegation msh1' vs 'wild type' | RNA interference | Transcript profiling of Arabidopsis msh1 mutants |
1.3 | | AT3G61630 | 'ADEK1 calpain overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing DEK1 calpain |
-1.2 | | AT3G61630 | 'hda9 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants |
-1.2 | | AT3G61630 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
1.2 | | AT3G61630 | 'benzothiadiazole' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis overexpressing mil4 after treatment with benzothiadiazole |
1.2 | | AT3G61630 | 'srk2dei triple mutant' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
1.2 | | AT3G61630 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
1.2 | | AT3G61630 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
1.2 | | AT3G61630 | '30 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.2 | | AT3G61630 | "rps10 RNAi; late onset of silencing (P3)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
1.2 | | AT3G61630 | 'Pseudomonas syringae pv. tomato expressing HopZ1a' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
1.2 | | AT3G61630 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '2 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.2 | | AT3G61630 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.2 | | AT3G61630 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
-1.2 | | AT3G61630 | 'Heterodera schachtii' vs 'none' | infect | Transcription profiling by array of Arabidopsis roots infected with the cyst nematode H. schachtii |
1.2 | | AT3G61630 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.2 | | AT3G61630 | 'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control' | genotype | Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 |
-1.2 | | AT3G61630 | 'fus3-3 mutant' vs 'wild type' in '8 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
1.2 | | AT3G61630 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.2 | | AT3G61630 | 'mkk2 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk2 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
1.2 | | AT3G61630 | 'drought' vs 'control' in 'camta1-3 mutant; leaf' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.2 | | AT3G61630 | 'arf2 mutant; none' vs 'Columbia; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for arf2 after treatment with brassinazole |
1.2 | | AT3G61630 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
1.2 | | AT3G61630 | 'NaCl' vs 'control' in 'stele cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.2 | | AT3G61630 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '24 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
1.2 | | AT3G61630 | '2,6-dichloroisonicotinic acid' vs 'none' in 'wild type' at '6 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
1.2 | | AT3G61630 | 'total RNA; turnip mosaic virus inoculated' vs 'total RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
1.2 | | AT3G61630 | 'pnp1-1' vs 'wild type' in 'nutrient medium minus phosphate' at '3 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
1.2 | | AT3G61630 | 'Cax1/Cax3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cax1/cax3 double mutants |
1.2 | | AT3G61630 | 'gai mutant' vs 'wild type' in 'flg22' | genotype, time, treatment | Transcription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000 |
1.1 | | AT3G61630 | 'clf28 mutant' vs 'wild type' in 'shoot' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-1.1 | | AT3G61630 | 'hda5 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants |
1.1 | | AT3G61630 | 'lsm5 sad1 double mutant' vs 'wild type' in 'C24' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
1.1 | | AT3G61630 | 'letm1-2 homozygous, letm2-1 heterozygous double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
1.1 | | AT3G61630 | 'arp6-1; mbd9-3' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
1.1 | | AT3G61630 | 't-zeatin; Col-0' vs 'DMSO; Col-0' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
1.1 | | AT3G61630 | 'trans-zeatin; 20 micromolar' vs 'control' in 'wild type' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
1.1 | | AT3G61630 | 'paclobutrazol; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
1.1 | | AT3G61630 | 'chr11-1 chr17-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis chr11-1 chr17-1 mutants |
1.1 | | AT3G61630 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
1.1 | | AT3G61630 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-1.1 | | AT3G61630 | 'lec1-1 mutant' vs 'wild type' in '8 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
1.1 | | AT3G61630 | '8h semi-in vivo pollen tube' vs '4h pollen tube' | growth condition, time | Transcription profiling by array of Arabidopsis pollen and pollen tubes grown in vitro and in vivo |
-1.1 | | AT3G61630 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
1.1 | | AT3G61630 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.1 | | AT3G61630 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.1 | | AT3G61630 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 avrRpm1' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
1.1 | | AT3G61630 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1.1 | | AT3G61630 | '0.5 hour; excess light' vs '0 hour; low light' in 'wild type' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.1 | | AT3G61630 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.1 | | AT3G61630 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.1 | | AT3G61630 | 'AGL15 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
-1.1 | | AT3G61630 | 'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
1.1 | | AT3G61630 | 'root; recovery, 10 day phosphate starvation then recovery for 3 days' vs 'root; mock' | organism part, treatment | The response and recovery of Arabidopsis thaliana transcriptome to phosphate starvation [ATH1-121501] |
1.1 | | AT3G61630 | 'systemically damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
1.1 | | AT3G61630 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.1 | | AT3G61630 | 'ndufa1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ndufa1 mutants |
1.1 | | AT3G61630 | 'ceh1 mutant' vs 'wild type' | genotype | Transcriptome of Arabidopsis thaliana ceh1 mutant |
1 | | AT3G61630 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
1 | | AT3G61630 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
1 | | AT3G61630 | 'pdx3-4 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
1 | | AT3G61630 | 'abi4-102' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
1 | | AT3G61630 | 'hypoxia' vs 'control' in 'wild type' | genotype, growth condition | Expression data from siliques of wild type and AtHb1-overexpressing plants under moderate hypoxia and standard conditions |
1 | | AT3G61630 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1 | | AT3G61630 | 'trans-zeatin; 20 micromolar' vs 'control' in 'arr10 arr12 double mutant' | compound, genotype | Transcription profiling of aerial parts of Arabidopsis wild type and arr10 arr12 double mutant seedlings treated with the cytokinin trans-zeatin |
1 | | AT3G61630 | 't-zeatin; SALK_098604, SALK_054752' vs 'DMSO; SALK_098604, SALK_054752' | compound, ecotype | Transcription profiling by array of Arabidopsis mutant for arr10 and arr12 after treatment with t-zeatin |
1 | | AT3G61630 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
1 | | AT3G61630 | 'rps2 mutant' vs 'wild type genotype' in 'none' at '0 hour' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
1 | | AT3G61630 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1 | | AT3G61630 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
1 | | AT3G61630 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'ethanol; 2.5 percent; 12 days in LD + 1 day in constant light (LL)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1 | | AT3G61630 | '16 hour (dark)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
1 | | AT3G61630 | 'nudt7-1 sid2-1' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
-1 | | AT3G61630 | 'ga1-3, brm-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-1 | | AT3G61630 | '4 hour (light)' vs '0 hour (light)' | growth condition, time | Transcription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves |
1 | | AT3G61630 | 'water deprivation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
1 | | AT3G61630 | 'drought stress' vs 'none' in 'control' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1 | | AT3G61630 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
-1 | | AT3G61630 | 'pBeaconRFP_IAA19mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
1 | | AT3G61630 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1 | | AT3G61630 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
1 | | AT3G61630 | 'NaCl' vs 'control' in 'cortex cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
1 | | AT3G61630 | 'complete solution minus iron; 48 hour' vs 'complete solution; 24 hour' in 'Kas-1' | ecotype, growth condition, time | Transcription profiling by array of Arabidopsis Kas-1 and Tsu-1 ecotypes in response to iron deficiency |
-1 | | AT3G61630 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
1 | | AT3G61630 | 'ozone 500 parts per billion' vs 'control' | growth condition | Arabidopsis thaliana response to ozone |
1 | | AT3G61630 | 'ozone 500 parts per billion' vs 'control' | growth condition | Functional Genomics of Ozone Stress in Arabidopsis. |
1 | | AT3G61630 | 'pil5-1' vs 'wild type' in 'far-red light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pil5 after exposure to red and far-red light or far-red light only |