7.5 | | AT4G12500 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
7.1 | | AT4G12500 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
7 | | AT4G12500 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
6.9 | | AT4G12500 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
6.9 | | AT4G12500 | 'pvip1; pvip2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pvip1 and pvip2 |
6.7 | | AT4G12500 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
6.6 | | AT4G12500 | 'pvip1;pvip2' vs 'none' | rnai, RNA interference | Transcription profiling by array of Arabidopsis after RNAi-mediated knock-down of pvip1 and pvip2 |
6.6 | | AT4G12500 | 'GST-NPP1 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
6.6 | | AT4G12500 | 'Flg-22 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
6.6 | | AT4G12500 | 'HrpZ 10uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
6.5 | | AT4G12500 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
6.4 | | AT4G12500 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wild type' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
6 | | AT4G12500 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
6 | | AT4G12500 | 'Piereis brassicae; eggs only' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-5.9 | | AT4G12500 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
5.9 | | AT4G12500 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
5.9 | | AT4G12500 | 'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-5.7 | | AT4G12500 | 'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wrky18, wrky40 double mutant' | genotype, infect, time | Transcription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii |
5.6 | | AT4G12500 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-5.6 | | AT4G12500 | 'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
5.6 | | AT4G12500 | 'wild type; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
5.5 | | AT4G12500 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
5.4 | | AT4G12500 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
5.3 | | AT4G12500 | 'dde2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-5.3 | | AT4G12500 | 'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
-5.3 | | AT4G12500 | 'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
5.3 | | AT4G12500 | 'sid2-2; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
5.2 | | AT4G12500 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
-5.1 | | AT4G12500 | '35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
-5.1 | | AT4G12500 | 'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'npr1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
5.1 | | AT4G12500 | 'Col-0; flg22' vs 'Col-0; none' | compound, genotype | Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 |
-5 | | AT4G12500 | '18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
-4.9 | | AT4G12500 | 'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-4.9 | | AT4G12500 | 'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'npr1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
4.8 | | AT4G12500 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
4.8 | | AT4G12500 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
4.8 | | AT4G12500 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-4.8 | | AT4G12500 | 'flg22; 100 nanomolar; 45 minute' vs 'none; 8 minute' in 'ein2-5' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
4.8 | | AT4G12500 | 'mpk6 knockout; flg22' vs 'mpk6 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 |
4.8 | | AT4G12500 | 'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
4.7 | | AT4G12500 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-4.7 | | AT4G12500 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
-4.7 | | AT4G12500 | 'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'ein2-5' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
-4.6 | | AT4G12500 | 'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'npr1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
4.5 | | AT4G12500 | 'flg22' vs 'water' at '3 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
4.4 | | AT4G12500 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'abscisic acids; 100 micromolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
4.4 | | AT4G12500 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
4.4 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Rschew' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
4.4 | | AT4G12500 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
-4.3 | | AT4G12500 | 'ASL9 overexpressor' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing ASL9 |
4.2 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
4.2 | | AT4G12500 | 'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
4.2 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Columbia-0' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
4.1 | | AT4G12500 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
4.1 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
4.1 | | AT4G12500 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
4.1 | | AT4G12500 | 'dde2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3.9 | | AT4G12500 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
3.9 | | AT4G12500 | 'scrm-D' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
3.9 | | AT4G12500 | 'lipopolysaccharide 100ug/ml' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
3.8 | | AT4G12500 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3.8 | | AT4G12500 | 'eds16 mutant; Golovinomyces orontii infection' vs 'eds16 mutant; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
3.8 | | AT4G12500 | 'phr1; phl1 double mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
3.8 | | AT4G12500 | 'ein2-1; Alternaria brassicicola' at '9 hours post infection' vs 'wild type; mock' at '9 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3.8 | | AT4G12500 | '10 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-3.8 | | AT4G12500 | 'flg22; 100 nanomolar; 120 minute' vs 'none; 8 minute' in 'ein2-5' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
-3.7 | | AT4G12500 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-3.7 | | AT4G12500 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
3.7 | | AT4G12500 | '35S::ERF104; flg22' vs '35S::ERF104; none' | compound, genotype | Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 |
-3.7 | | AT4G12500 | 'flg22; 100 nanomolar; 60 minute' vs 'none; 8 minute' in 'wild type genotype' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
3.6 | | AT4G12500 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
3.6 | | AT4G12500 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
3.6 | | AT4G12500 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
3.6 | | AT4G12500 | 'wild type; Golovinomyces orontii infection' vs 'wild type; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
-3.6 | | AT4G12500 | 'flg22; 100 nanomolar; 180 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
-3.6 | | AT4G12500 | 'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'npr1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
3.5 | | AT4G12500 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3.5 | | AT4G12500 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
3.4 | | AT4G12500 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
3.4 | | AT4G12500 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
3.4 | | AT4G12500 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
3.4 | | AT4G12500 | "rps10 RNAi; late onset of silencing (P3)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
-3.3 | | AT4G12500 | 'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
3.3 | | AT4G12500 | 'srk2dei triple mutant' vs 'wild type' in '50 micromolar abscisic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-3.2 | | AT4G12500 | 'sd1-29' vs 'wild type genotype' in '3-OH-FA; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-3.2 | | AT4G12500 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
3.2 | | AT4G12500 | 'dms4 mutant' vs 'wild type' at '21 day' | age, genotype | Transcription profiling of Arabidopsis dms4-1, drd1-1 and drd1-6 mutant seedlings against wild-type to identify targets of IWR1-like transcription factor |
-3.2 | | AT4G12500 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-3.2 | | AT4G12500 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-3.2 | | AT4G12500 | 'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
3.1 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-3.1 | | AT4G12500 | 'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
3.1 | | AT4G12500 | 'Pseudomonas syringae pv. tomato expressing HopZ1a:C216A' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
3.1 | | AT4G12500 | 'vte2 mutant' vs 'wild type' in '3 day' | age, genotype | Transcription profiling by array of Arabidopsis mutant for vte1 or vte2 |
3.1 | | AT4G12500 | 'powdery mildew infected' vs 'uninfected' in 'syringolin; 20 micromolar' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-3.1 | | AT4G12500 | 'flg22; 100 nanomolar; 15 minute' vs 'none; 8 minute' in 'ein2-5' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
-3.1 | | AT4G12500 | 'sodium nitroprusside' vs 'none' | compound | Expression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO |
3 | | AT4G12500 | 'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
-3 | | AT4G12500 | 'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
-3 | | AT4G12500 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.9 | | AT4G12500 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.9 | | AT4G12500 | 'Pseudomonas syringae pv. tomato expressing HopZ1a' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.9 | | AT4G12500 | 'msh1 albino mutant' vs 'wild type' | genotype | Transcript profiling of Arabidopsis albino msh1 mutants |
2.9 | | AT4G12500 | 'trichostatin A 2.5 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
2.9 | | AT4G12500 | 'pdx1.3 knockout' vs 'wild type' in 'root' | genotype, organism part | Expression data from WT Col-0 and the pdx1.3 ko mutant of Arabidopsis |
2.8 | | AT4G12500 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
2.8 | | AT4G12500 | 'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
2.8 | | AT4G12500 | 'pnp1-1' vs 'wild type' in 'full nutrient medium' at '168 hour' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation |
-2.8 | | AT4G12500 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.7 | | AT4G12500 | 'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'Bay-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-2.7 | | AT4G12500 | 'xrn3-8 mutant' vs 'wild type genotype' at 'immediately after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
2.7 | | AT4G12500 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-2.7 | | AT4G12500 | 'AGL15 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
2.7 | | AT4G12500 | 'double mutant APK1/APK2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for apk1 and apk2 |
2.7 | | AT4G12500 | 'dexamethasone; 10 micromolar' vs 'DMSO' in '35S::WRKY23-GR' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
-2.7 | | AT4G12500 | 'catalase2 mutant' vs 'wild type' in 'grown at high CO2 concentration in short day length regime' | genotype, growth condition | Transcription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod |
2.7 | | AT4G12500 | 'systemically damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
-2.7 | | AT4G12500 | 'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
2.6 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-2.6 | | AT4G12500 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
2.6 | | AT4G12500 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.6 | | AT4G12500 | 'Pseudomonas syringae pv. tomato' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.6 | | AT4G12500 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
2.6 | | AT4G12500 | 'AtGATA2ox transgenic' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing AtGATA2 or mutant for bri1 |
2.5 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
2.5 | | AT4G12500 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.5 | | AT4G12500 | 'spx1,spx2 double mutant' vs 'wild type' in 'complete medium' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
2.5 | | AT4G12500 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
2.5 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.5 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.4 | | AT4G12500 | 'bli-1 -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
-2.4 | | AT4G12500 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
2.4 | | AT4G12500 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
2.4 | | AT4G12500 | 'phosphate-lacking medium' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
-2.4 | | AT4G12500 | 'nano-titania; 500 milligram per liter' vs 'potassium chloride; 0.1 molar' | compound | Expression data from 12-day old Arabidopsis germinants |
-2.4 | | AT4G12500 | 'abscisic acids; 50 micromolar' vs 'none' in 'nup85 loss of function mutant' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
2.4 | | AT4G12500 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-2.4 | | AT4G12500 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
2.4 | | AT4G12500 | 'Pseudomonas syringae DC3000hrpA' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
2.3 | | AT4G12500 | 'Bla-1 x Hh-0' vs 'Hh-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.3 | | AT4G12500 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
2.3 | | AT4G12500 | 'powdery mildew' vs 'none' in 'pmr4-1' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
2.3 | | AT4G12500 | 'Phytophthera infestans' vs 'none' at '24 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
-2.3 | | AT4G12500 | 'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
2.3 | | AT4G12500 | 'oligogalacturonide' vs 'water' at '3 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
-2.3 | | AT4G12500 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.3 | | AT4G12500 | 'Pseudomonas syringae DC3000' vs 'control' in '4 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
2.2 | | AT4G12500 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.2 | | AT4G12500 | 'abi4-102' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
-2.2 | | AT4G12500 | 'estrogen induction' vs 'none' at '48 hour post induction' at 'age 7 day' | age, time, treatment | Transcription profiling by array of Arabidopsis seedlings after estrogen-mediated induction of FAMA |
-2.2 | | AT4G12500 | 'xrn3-8 mutant' vs 'wild type genotype' at '60 minutes after cordycepin treatment' | genotype, sampling time point | Transcription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin |
2.2 | | AT4G12500 | '3% glucose; 0.1% epibrassinolide' vs 'none' | growth condition | Genome wide analysis of glucose brassinosteroid interaction in Arabidopsis |
2.2 | | AT4G12500 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
2.2 | | AT4G12500 | 'Pseudomonas syringae DC3000hrpA' vs 'control' in '2 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
2.2 | | AT4G12500 | 'Pseudomonas syringae DC3000hrpA' vs 'control' in '4 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
2.1 | | AT4G12500 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
2.1 | | AT4G12500 | 'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
2.1 | | AT4G12500 | 'mock inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
2.1 | | AT4G12500 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.1 | | AT4G12500 | 'OGs; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.1 | | AT4G12500 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
2.1 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
-2.1 | | AT4G12500 | 'nor1-1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
2 | | AT4G12500 | 'swp73b-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis swp73b-1 mutant |
2 | | AT4G12500 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
2 | | AT4G12500 | 'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2 | | AT4G12500 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
2 | | AT4G12500 | 'rhd2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for rhd2/ArtbohC |
2 | | AT4G12500 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-2 | | AT4G12500 | 'flg22; 100 nanomolar; 30 minute' vs 'none; 8 minute' in 'jar1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
1.9 | | AT4G12500 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.9 | | AT4G12500 | 'vtc1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
1.9 | | AT4G12500 | 'hid1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis hid1 mutant seedlings grown under continuous red light |
-1.9 | | AT4G12500 | 'Phytophthora parasitica' vs 'none' in 'wild type genotype' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-1.9 | | AT4G12500 | 'estradiol; 2 micromolar' vs 'DMSO' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
-1.9 | | AT4G12500 | 'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
1.9 | | AT4G12500 | 'camta1/2/3 mutant; grown at 22 C and treated at 4 C for 24 hours' vs 'wild type; grown at 22 C and treated at 4 C for 24 hours' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
-1.9 | | AT4G12500 | '1,4-dithiothreitol; 2 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
1.9 | | AT4G12500 | 'rao1-1 mutant' vs 'wild type' in 'water' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
-1.9 | | AT4G12500 | '30 hours' vs '27 hours' | time | CPIB Lateral Root timecourse |
-1.9 | | AT4G12500 | 'dorn1-1 mutant' vs 'wild type' in '100 micromolar ATP' | genotype, growth condition | ATP effect on Arabidopsis roots |
1.8 | | AT4G12500 | 'bli-1 -/-; ire1b -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
1.8 | | AT4G12500 | 'bdr1; brd2; brd3 triple loss of function mutant' vs 'wild type genotype' | genotype | Gene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis thaliana seedlings |
-1.8 | | AT4G12500 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1.8 | | AT4G12500 | 'Spt4 knock down' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2 |
-1.8 | | AT4G12500 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'control; 12 days in LD + 1 day in constant light (LL)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1.8 | | AT4G12500 | 'pepr1-1 Pepr2-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.8 | | AT4G12500 | 'Pseudomonas syringae DC3000::avrRpm1' vs 'control' in '4 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.7 | | AT4G12500 | 'bli-1 -/-; ire1a -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
1.7 | | AT4G12500 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.7 | | AT4G12500 | 'double mutant at3g03940/at518190 knockdown' vs 'wild type' | genotype | Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression] |
-1.7 | | AT4G12500 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.7 | | AT4G12500 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.7 | | AT4G12500 | 'mock inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
1.7 | | AT4G12500 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.7 | | AT4G12500 | 'Erysiphe orontii' vs 'none' at '120 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
1.7 | | AT4G12500 | 'pho1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis phosphate deficient mutant pho1 |
1.7 | | AT4G12500 | 'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.7 | | AT4G12500 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1.7 | | AT4G12500 | 'ga1-3, brm-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
1.7 | | AT4G12500 | 'tunicamycin; ire1a ire1b mutant' vs 'tunicamycin; wild type' | compound, genotype | Transcriptome analysis of ire1 mutants after treatment with or without tunicamycin in the presence of actinomycin D |
1.7 | | AT4G12500 | 'Pseudomonas syringae DC3000' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.7 | | AT4G12500 | 'vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
-1.7 | | AT4G12500 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-1.7 | | AT4G12500 | 'flg22; 100 nanomolar; 30 minute' vs 'none; 8 minute' in 'npr1-1' | compound, genotype, time | EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
1.7 | | AT4G12500 | '24 hours' vs '21 hours' | time | CPIB Lateral Root timecourse |
1.6 | | AT4G12500 | 'top3A-2' vs 'wild type genotype' | genotype | Transcriptome analysis of top3A-2 complementation lines in Arabidopsis thaliana |
-1.6 | | AT4G12500 | 'PIF5 overexpressing; high red/far-red light ratio' vs 'wild type; high red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
-1.6 | | AT4G12500 | 'mCherry-RAX1-GR' vs 'mCherry-GR' in 'dexamethasone; 10 micromolar' | compound, genotype | RNA-seq of Arabidopsis 14 day-old seedlings expressing either mCherry-RAX1-GR or mCherry-GR with 4h mock vs. dexamethasone treatment |
-1.6 | | AT4G12500 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
-1.6 | | AT4G12500 | 'iron deprivation' vs 'normal iron condition' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ubc13A or expressing cucumber CsUBC13 under the control of the 35S promoter after iron deprivation |
1.6 | | AT4G12500 | 'C24 x Ler F1 hybrid' vs 'C24 ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
1.6 | | AT4G12500 | 'phosphate deprivation' vs 'control' in 'wild type genotype; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
1.6 | | AT4G12500 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '24 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
1.5 | | AT4G12500 | 'bzip17 -/- ; bzip28 -/-' vs 'wild type genotype' in 'none' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
-1.5 | | AT4G12500 | '35S:LSD1-GFP' vs 'dexamethasone; 30 micromolar; 35S:LSD1-GR' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
-1.5 | | AT4G12500 | 'Space Flight' vs 'none' in '4 day; Col-0' | age, ecotype, environmental stress | Plant development on ISS differs from the development on the ground and is influenced by the genetic background. |
1.5 | | AT4G12500 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
-1.5 | | AT4G12500 | 'estradiol; 2 micromolar' vs 'DMSO' at '12 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
-1.5 | | AT4G12500 | 'nematode aqueous diffusate' vs 'control' | stimulus | Transcription profiling by array of Arabidopsis roots treated with nematode aqueous diffusate (NemaWater) |
-1.5 | | AT4G12500 | '2 hour; excess light' vs '0 hour; low light' in 'tnr4 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
-1.5 | | AT4G12500 | '35S::amiRAP2.2-12' vs 'wild type' in 'hypoxia' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing RAP2.12 or with RAP2.12 and RAP2.2 silenced after growth in hypoxic conditions |
1.5 | | AT4G12500 | 'Plasmodiophora brassicae' vs 'none' at '23 day' | infect, time | Plasmodiophora brassicae infection of Arabidopsis thaliana |
-1.5 | | AT4G12500 | 'ethanol; 2.5 percent' vs 'control' in 'wild type; 12 days in LD + 1 day in constant light (LL)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
1.5 | | AT4G12500 | 'ahk2/ahk3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.5 | | AT4G12500 | '4 degree celsius' vs '20 degree celsius' in 'Tenela' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
1.5 | | AT4G12500 | 'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
1.5 | | AT4G12500 | 'abi4 vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
-1.5 | | AT4G12500 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.5 | | AT4G12500 | 'edr1 mutant' vs 'wild type' in 'Golovinomyces cichoracearum' at '36 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
1.4 | | AT4G12500 | 'NSRa/NSRb' vs 'wild type' | genotype | Alternative RNA processing events in a double NSR mutant Arabidopsis |
1.4 | | AT4G12500 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.4 | | AT4G12500 | 'TaRZ1 overexpressing line' vs 'wild type' | genotype | Gene expression profile in wheat TaRZ1-expressing Arabidopsis plant |
1.4 | | AT4G12500 | 'cdkf,1-2 T-DNA insertion mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cdkf;1-2 mutant |
-1.4 | | AT4G12500 | 'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control' | genotype | Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 |
-1.4 | | AT4G12500 | 'iron deprivation' vs 'normal iron condition' in '35S::CsUBC13 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ubc13A or expressing cucumber CsUBC13 under the control of the 35S promoter after iron deprivation |
1.4 | | AT4G12500 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.4 | | AT4G12500 | 'L2.4 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis expressing mutant forms of beet curly-top virus L2 protein |
-1.4 | | AT4G12500 | 'clf28 mutant' vs 'wild type' in 'root' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
1.4 | | AT4G12500 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; shoot' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
1.4 | | AT4G12500 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wild type; Botrytis cinerea 2100' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
1.4 | | AT4G12500 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '30 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1.4 | | AT4G12500 | 'efr-1; untreated' at '0 hour' vs 'wild type; untreated' at '0 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.3 | | AT4G12500 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1.3 | | AT4G12500 | 'wild type; Botrytis cinerea 2100' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
-1.3 | | AT4G12500 | '2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.3 | | AT4G12500 | 'lsd1-1' vs 'wild type genotype' in 'none' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
-1.3 | | AT4G12500 | 'safener' vs 'none' in 'sid2-2 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2 or tga2, tga3, tga5 and tga6 after treatment with mefenpyr and isoxadifen |
1.3 | | AT4G12500 | 'mkk1 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.3 | | AT4G12500 | 'HRE1-RNAi20' vs 'wild type' in 'normoxia' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
1.3 | | AT4G12500 | 'hypoxia' vs 'normoxia' in 'HRE1-RNAi20' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
1.3 | | AT4G12500 | 'Agrobacterium tumefaciens GV3101' vs 'none' | infect | Transcription profiling by array of injured Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
-1.3 | | AT4G12500 | 'safener' vs 'none' in 'tga2tga3tga5tga6 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2 or tga2, tga3, tga5 and tga6 after treatment with mefenpyr and isoxadifen |
-1.3 | | AT4G12500 | 'ethanol; 2.5 percent' vs 'control' in 'wild type; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1.3 | | AT4G12500 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
1.3 | | AT4G12500 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
-1.3 | | AT4G12500 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.2 | | AT4G12500 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.2 | | AT4G12500 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.2 | | AT4G12500 | 'iron deprivation' vs 'normal iron condition' in 'ubc13-/-mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ubc13A or expressing cucumber CsUBC13 under the control of the 35S promoter after iron deprivation |
1.2 | | AT4G12500 | 'benzothiadiazole' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis overexpressing mil4 after treatment with benzothiadiazole |
1.2 | | AT4G12500 | 'Rhizoctonia solani AG2-1' vs 'mock' | infect | Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1 |
-1.2 | | AT4G12500 | 'ire1a/ire1b' vs 'wild type' in 'tunicamycin 5 milligram per liter' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ire1 after treatment with tunicamycin |
1.2 | | AT4G12500 | 'GVGdvl4' vs 'control' in 'dexamethasone' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone |
-1.2 | | AT4G12500 | 'dexamethasone; 10 micromolar' vs 'none' | compound | Genome-wide analysis of genes regulated by ARR22 overexpression. |
1.2 | | AT4G12500 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1.2 | | AT4G12500 | 'mbs1-1 mutant' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
-1.2 | | AT4G12500 | 'dexamethasone; 10 micromolar' vs 'dimethyl sulfoxide; 0.01 percent' in 'mCherry-RAX1-GR' | compound, genotype | RNA-seq of Arabidopsis 14 day-old seedlings expressing either mCherry-RAX1-GR or mCherry-GR with 4h mock vs. dexamethasone treatment |
-1.2 | | AT4G12500 | 'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
1.2 | | AT4G12500 | 'catalase2 mutant' vs 'wild type' in 'transferred to air for 2 days in long day length regime' | genotype, growth condition | Transcription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod |
1.2 | | AT4G12500 | '2 day; naphthaleneacetic acid' vs '0 day; no treatment' in 'stem tissue' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid |
-1.2 | | AT4G12500 | 'ein2-1; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-1.2 | | AT4G12500 | '9 hr hypoxia' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.1 | | AT4G12500 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.1 | | AT4G12500 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.1 | | AT4G12500 | 'powdery mildew' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
-1.1 | | AT4G12500 | 'ethanol; 2.5 percent' vs 'control' in 'ethanol-inducible TOC1 transgenic line; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
1.1 | | AT4G12500 | '3-OH-FA; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.1 | | AT4G12500 | 'CO8; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.1 | | AT4G12500 | 'chitin' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
-1.1 | | AT4G12500 | 'pft1 mutant' vs 'wild type' in 'control' at '0 hour' | genotype, growth condition, time | pft1 glucose responses |
-1.1 | | AT4G12500 | 'dexamethasone; 5 micromolar' vs 'none' in 'inducible 35S:LOB-GR line' | compound, genotype | Transcriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana |
1.1 | | AT4G12500 | 'sdg8-5' vs 'wild type genotype' in '0% sucrose, 70 uE light' | genotype, growth condition | Transcription profiling by array of sdg8-5 mutant Arabidopsis plant with or without carbon and/or light treatment against wild-type counterparts to study SDG8's role of histone methylation in energy metabolism |
-1.1 | | AT4G12500 | 'trichostatin; 1 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
-1.1 | | AT4G12500 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
1.1 | | AT4G12500 | 'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type' | genotype | Transcriptome profiling of LecRKVI.2 over-expressor plants. |
-1.1 | | AT4G12500 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
-1.1 | | AT4G12500 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'control; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
1.1 | | AT4G12500 | 'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1 | | AT4G12500 | 'atnusg mutant' vs 'wild type genotype' | genotype | RNA-sequence to compare the transcriptional profiles of nuclear and plastidic genes in the atnusg and the wild-type |
-1 | | AT4G12500 | '35S::HA::RAP2.12' vs 'wild type' in 'hypoxia' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing RAP2.12 or with RAP2.12 and RAP2.2 silenced after growth in hypoxic conditions |
-1 | | AT4G12500 | 'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1 | | AT4G12500 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'none' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
1 | | AT4G12500 | 'nano-ceria; 500 milligram per liter' vs 'water' | compound | Expression data from 12-day old Arabidopsis germinants |
1 | | AT4G12500 | 'pkl-1' vs 'wild type' | genotype | Identify differentially expressed genes in 14-day-old pkl seedlings |
1 | | AT4G12500 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of injured Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
-1 | | AT4G12500 | 'sd1-29' vs 'wild type genotype' in '3-OH-FA; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1 | | AT4G12500 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'ethanol; 2.5 percent; 12 days in LD + 1 day in constant light (LL)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
1 | | AT4G12500 | 'Sphingomonas melonis Fr1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
1 | | AT4G12500 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1 | | AT4G12500 | 'pmr4-1' vs 'wild type genotype' in 'powdery mildew' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
1 | | AT4G12500 | 'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress |
1 | | AT4G12500 | 'LBD37 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
1 | | AT4G12500 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
1 | | AT4G12500 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
-1 | | AT4G12500 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1 | | AT4G12500 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1 | | AT4G12500 | 'fip37-4 LEC1:FIP37' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings |
-1 | | AT4G12500 | 'hydrogen peroxide; 20 millimolar; anac017-1' vs 'water; anac017-1' | compound, genotype | Transcription profiling by array of Arabidopsis to investogate reactive oxygen signals and specific mitochondrial retrograde stress signals |
-1 | | AT4G12500 | 'antimycin A; 50 micromolar' vs 'water' in 'rao1-1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1 | | AT4G12500 | 'edr1 mutant' vs 'wild type' in 'none' at '0 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
1 | | AT4G12500 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |
1 | | AT4G12500 | 'wild type; Verticillium longisporum isolate VL1 (CBS110220)' vs 'wild type; mock' | genotype, infect | Expression data roots of Arabidopsis plants inoculated with Verticillium longisporum |
-1 | | AT4G12500 | 'mbs1-1 mutant' vs 'wild type genotype' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1 | | AT4G12500 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
1 | | AT4G12500 | 'pkr2 pkl' vs 'wild type' | genotype | Transcription profiling of Arabidopsis pickle mutants |