-7.5 | | AT4G14560 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-7.2 | | AT4G14560 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-6.8 | | AT4G14560 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
6.3 | | AT4G14560 | 'COBL9::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
6.2 | | AT4G14560 | 'rhd6 WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
6.2 | | AT4G14560 | 'WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
5.4 | | AT4G14560 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
5.3 | | AT4G14560 | '30 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
5.3 | | AT4G14560 | '60 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
5.1 | | AT4G14560 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
4.9 | | AT4G14560 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
4.7 | | AT4G14560 | '15 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
4.7 | | AT4G14560 | 'pMON999_mRFP control vector; indole-3-acetic acid' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-4.3 | | AT4G14560 | 'dexamethasone; 15 micromolar' vs 'none' | compound | RNA-seq to investigate Auxin responsive genes in the Arabidopsis stem |
4.3 | | AT4G14560 | '4 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
4.3 | | AT4G14560 | '1-naphthylacetic acid' vs 'none' in 'wild type' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
4.1 | | AT4G14560 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'whole root' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
-3.9 | | AT4G14560 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-3.8 | | AT4G14560 | '10 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-3.7 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
3.7 | | AT4G14560 | 'PAP, 100 micromolar; lithium chloride, 100 millimolar; ATP, 1 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
3.6 | | AT4G14560 | 'lithium chloride, 100 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
3.6 | | AT4G14560 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'stele' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
3.4 | | AT4G14560 | 'PAP, 100 micromolar; lithium chloride, 100 millimolar' vs 'none' | stimulus | RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling |
3.4 | | AT4G14560 | 'indole-3-acetic acid' vs 'none' in 'arf19-1' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
3.4 | | AT4G14560 | 'fus3-3 mutant' vs 'wild type' in '12 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-3.4 | | AT4G14560 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-3.4 | | AT4G14560 | 'ANAC017 OEb' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-3.3 | | AT4G14560 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
3.3 | | AT4G14560 | 'auxin' vs 'none' in '35 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
3.3 | | AT4G14560 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'columella' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
3.2 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Sha' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
3.2 | | AT4G14560 | '14 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
3.2 | | AT4G14560 | 'indole-3-acetic acid' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
-3.1 | | AT4G14560 | 'Spt4 knock down' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2 |
3.1 | | AT4G14560 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
-3 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-3 | | AT4G14560 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-3 | | AT4G14560 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-3 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-3 | | AT4G14560 | 'Col-0; 350 ppb ozone exposure for 2hr' vs 'Col-0; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-3 | | AT4G14560 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3 | | AT4G14560 | '1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
3 | | AT4G14560 | 'cycloheximide, dexamethasone' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
3 | | AT4G14560 | '1-naphthylacetic acid and flg22' vs 'none' in 'wild type' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
-2.9 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wild type' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
2.9 | | AT4G14560 | 'indole-3-acetic acid and 4-thiazolidione appended with derivatized acetic acid' vs 'none' | growth condition | Transcription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation |
-2.9 | | AT4G14560 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.9 | | AT4G14560 | 'dexamethasone and cycloheximide' vs 'control' | treatment | Transcription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts |
2.9 | | AT4G14560 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'pericycle' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
2.9 | | AT4G14560 | 'pBeaconRFP_IAA7mll overexpressor; indole-3-acetic acid' vs 'pBeaconRFP_IAA7mll overexpressor; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-2.9 | | AT4G14560 | '5 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
2.8 | | AT4G14560 | 'indole-3-acetic acid and furyl acrylate ester of thiadazole heterocycle' vs 'none' | growth condition | Transcription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation |
2.8 | | AT4G14560 | 'indole-3-acetic acid; 5 micromolar' vs 'none' in 'epidermis' | compound, organism part | Transcription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls |
2.8 | | AT4G14560 | 'cycloheximide' vs 'control' | treatment | Transcription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts |
-2.8 | | AT4G14560 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-2.7 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
-2.7 | | AT4G14560 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-2.7 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
2.7 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.7 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bay-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.7 | | AT4G14560 | '60 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2.7 | | AT4G14560 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
2.6 | | AT4G14560 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
2.6 | | AT4G14560 | 'lec1-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-2.6 | | AT4G14560 | 'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'indole-3-butyric acid; 10 micromolar; wild type' | compound, genotype | Expression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA) |
2.6 | | AT4G14560 | 'indole-3-acetic acid' vs 'none' | growth condition | Transcription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation |
2.6 | | AT4G14560 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.5 | | AT4G14560 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
2.5 | | AT4G14560 | '30 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.5 | | AT4G14560 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2.5 | | AT4G14560 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
2.5 | | AT4G14560 | '60 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.5 | | AT4G14560 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
-2.5 | | AT4G14560 | 'phytoprostane A1 75 micromolar' vs 'methanol 0.5 volume percent' | compound, dose | Response of Arabidopsis cell culture to phytoprostane A1 |
2.4 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Col-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.4 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Fei-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.4 | | AT4G14560 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.4 | | AT4G14560 | 'cycloheximide' vs 'mock' | treatment | Transcription profiling of Arabidopsis WUSCHEL targets |
-2.4 | | AT4G14560 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
-2.4 | | AT4G14560 | '2-hexenal' vs 'mock' at '1 hour' | compound, time | Transcription profiling by array of Arabidopsis rosette leaves in response to aerial E-2-hexenal, one of the green leaf volatiles |
2.4 | | AT4G14560 | 'pBeaconRFP_IAA19mll overexpressor; indole-3-acetic acid' vs 'pBeaconRFP_IAA19mll overexpressor; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-2.3 | | AT4G14560 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
2.3 | | AT4G14560 | 'cycloheximide' vs 'dimethyl sulfoxide' in '60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
2.3 | | AT4G14560 | '30 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.3 | | AT4G14560 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2.3 | | AT4G14560 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bur-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
2.3 | | AT4G14560 | 'indole-3-acetic acid' vs 'none' in 'nph4-1' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
-2.3 | | AT4G14560 | 'sav3-2' vs 'wild type' in 'simulated shade for 1 hour' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sav after an hour of simulated shade. |
-2.3 | | AT4G14560 | 'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none' | time, treatment | Expression profiling of Col-0 treated with Psm:AvrRpt2 |
2.2 | | AT4G14560 | '4.5 micromolar Naphtalenacetic acid and 50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-2.2 | | AT4G14560 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-2.2 | | AT4G14560 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
2.2 | | AT4G14560 | 'treated with 2-(2,4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid; 5 micromolar' vs 'control' | compound | Activation of auxin signalling counteracts photorespiratory hydrogen peroxide dependent cell death |
-2.2 | | AT4G14560 | '2-hexenal' vs 'mock' at '3 hour' | compound, time | Transcription profiling by array of Arabidopsis rosette leaves in response to aerial E-2-hexenal, one of the green leaf volatiles |
2.1 | | AT4G14560 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2.1 | | AT4G14560 | 'myb36-1 (pSCR::ER:GFP)' vs 'wild type (pSCR::ER:GFP)' in 'root endodermis' | genotype, organism part | Transcription profiling by high throughput sequencing of the endodermis of Arabidopsis myb36 mutants |
2.1 | | AT4G14560 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-2 | | AT4G14560 | 'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
2 | | AT4G14560 | '15 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
2 | | AT4G14560 | 'wox5-1 mutant' vs 'wild type genotype' in 'wox5 GFP positive' | genotype, phenotype | From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
-2 | | AT4G14560 | 'PIF5 overexpressing; low red/far-red light ratio' vs 'wild type; low red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
1.9 | | AT4G14560 | '3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none' | compound | Transcription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions |
1.9 | | AT4G14560 | 'tcx2; FEZ:FEZ-GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.9 | | AT4G14560 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.9 | | AT4G14560 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.9 | | AT4G14560 | '15 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.9 | | AT4G14560 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-1.9 | | AT4G14560 | 'methyl jasmonate' vs 'mock' in 'jaz7-1D' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1.9 | | AT4G14560 | 'mkk1 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.8 | | AT4G14560 | 'Ler x C24 F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.8 | | AT4G14560 | 'ANAC017 OEb' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-1.8 | | AT4G14560 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
-1.8 | | AT4G14560 | 'drought' vs 'control' in 'camta1-3 mutant; root' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.8 | | AT4G14560 | 'auxin' vs 'none' in '7 day' | age, growth condition | Transcription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin |
-1.8 | | AT4G14560 | 'ethanol' at '4 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1.8 | | AT4G14560 | 'indole-3-butyric acid; 10 micromolar; wild type' vs 'DMSO; wild type' | compound, genotype | Expression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA) |
-1.8 | | AT4G14560 | 'pBeaconRFP_IAA7mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-1.8 | | AT4G14560 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-1.8 | | AT4G14560 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1.8 | | AT4G14560 | 'tcx2; WOX5:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.7 | | AT4G14560 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.7 | | AT4G14560 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
-1.7 | | AT4G14560 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
1.7 | | AT4G14560 | '9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.7 | | AT4G14560 | '0.1 mM nitrate' vs '10 mM nitrate' in 'MtNPF1.7 expression' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
-1.7 | | AT4G14560 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.7 | | AT4G14560 | '1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
1.7 | | AT4G14560 | '13 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-1.7 | | AT4G14560 | 'ahk2ahk3' vs 'wild type' in '1 degree celsius' | genotype, temperature | Transcription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana |
1.7 | | AT4G14560 | '15 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1.7 | | AT4G14560 | 'abscisic acid and dimethylthiourea' vs 'ethanol' | compound | Transcription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea |
-1.7 | | AT4G14560 | 'NaCl' vs 'control' in 'columella root cap cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
1.6 | | AT4G14560 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-1.6 | | AT4G14560 | 'ethanol' at '2 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
1.6 | | AT4G14560 | 'cycloheximide (60 micromolar) and dexamethasone (60 micromolar)' vs 'dimethyl sulfoxide; 60 micromolar' | compound | Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes |
1.6 | | AT4G14560 | 'eds16 mutant; Golovinomyces orontii infection' vs 'eds16 mutant; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.6 | | AT4G14560 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 avrRpm1' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
1.6 | | AT4G14560 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.6 | | AT4G14560 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.6 | | AT4G14560 | '35S::MIF1; dark' vs 'empty pRR2222 vector; dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
1.6 | | AT4G14560 | 'L-azetidine-2-carboxylic acid' vs 'L-proline' | compound, temperature | Transcription profiling by array of Arabidopsis after heat shock or treatment with tunicamycin or L-azetidine-2-carboxylic acid |
1.6 | | AT4G14560 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development |
1.6 | | AT4G14560 | '18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
-1.5 | | AT4G14560 | 'ANAC017 OEa' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-1.5 | | AT4G14560 | 'bli-1 -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
1.5 | | AT4G14560 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
1.5 | | AT4G14560 | '4.5 micromolar Naphtalenacetic acid' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
1.5 | | AT4G14560 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.5 | | AT4G14560 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.5 | | AT4G14560 | 'agl15-4; agl18-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
-1.5 | | AT4G14560 | 'scrm-D;mute' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
1.5 | | AT4G14560 | 'beta-estradiol 5 micromolar' vs 'water' at 12h | compound, time | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of RBR after treatment with beta estradiol |
-1.5 | | AT4G14560 | 'ahk2/ahk3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
-1.5 | | AT4G14560 | 'ethanol-inducible TOC1 transgenic line' vs 'wild type' in 'control; 13 days in 12 h light/12 h dark (LD)' | compound, genotype, growth condition | Gene expression from Inducible TOC1 expression in Arabidopsis seedlings |
-1.5 | | AT4G14560 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-1.5 | | AT4G14560 | '37 degrees celsius' vs '20 degrees celsius' | compound, temperature | Transcription profiling by array of Arabidopsis after heat shock or treatment with tunicamycin or L-azetidine-2-carboxylic acid |
-1.5 | | AT4G14560 | 'mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.5 | | AT4G14560 | 'myb21-5, myb24-5 double mutant' vs 'wild type' at 'flowering stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-1.4 | | IAA1 | 'dja6; dja5 double mutant' vs 'wild type genotype' | genotype | RNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana |
1.4 | | AT4G14560 | 'light pulse at ZT18' vs 'control' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing |
1.4 | | AT4G14560 | 'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS' | compound, genotype | WUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq] |
-1.4 | | AT4G14560 | 'dms4 mutant' vs 'wild type' at '21 day' | age, genotype | Transcription profiling of Arabidopsis dms4-1, drd1-1 and drd1-6 mutant seedlings against wild-type to identify targets of IWR1-like transcription factor |
1.4 | | AT4G14560 | 'bzr1-1D;bri1-116 double mutant' vs 'bri1-116 null mutant' | genotype | Transcription profiling by array of Arabidopsis mutant for bzr1 and bri1 or bri1 only |
-1.4 | | AT4G14560 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.4 | | AT4G14560 | 'ethanol' at '1 hour' vs 'control' at '0 hour' | compound, time | Transcription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol |
-1.4 | | AT4G14560 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-1.4 | | AT4G14560 | "leaf 8 wounded" vs "unwounded" | growth condition | Transcription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls |
-1.4 | | AT4G14560 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
1.4 | | AT4G14560 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.4 | | AT4G14560 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.4 | | AT4G14560 | '10 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-1.4 | | AT4G14560 | 'methyl jasmonate' vs 'mock' in 'wild type' | compound, genotype | Expression profiling of wild-type Arabidopsis and an activation-tagged jaz7-1D line. |
-1.4 | | AT4G14560 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
-1.4 | | AT4G14560 | 'sid2-1 mutant; mock' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
-1.4 | | AT4G14560 | 'rrd2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis temperature-dependent later root fasciation mutants |
-1.4 | | AT4G14560 | 'scrm-D' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
-1.4 | | AT4G14560 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
-1.3 | | AT4G14560 | 'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
-1.3 | | AT4G14560 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.3 | | AT4G14560 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.3 | | AT4G14560 | 'drought' vs 'control' in 'wild type; root' | genotype, growth condition, organism part | Role of CAMTA1 gene under drought stress |
1.3 | | AT4G14560 | '9 hr hypoxia' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.3 | | AT4G14560 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
1.3 | | AT4G14560 | 'fus3-3 mutant' vs 'wild type' in '8 day; Col-0' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1.3 | | AT4G14560 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-1.3 | | AT4G14560 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1.3 | | AT4G14560 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1.3 | | AT4G14560 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.3 | | AT4G14560 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1.3 | | AT4G14560 | 'Columbia; brassinazole' vs 'Columbia; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for arf2 after treatment with brassinazole |
1.3 | | AT4G14560 | 'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole' | growth condition, organism part | Transcription profiling by array of Arabidopsis subjected to far-red light pulse treatment |
1.3 | | AT4G14560 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.3 | | AT4G14560 | '2 hr hypoxia' vs '2 hr control' in 'polysomal mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
1.3 | | AT4G14560 | '240 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.3 | | AT4G14560 | 'sub-zero acclimation' vs 'cold acclimation' in 'Rschew' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
-1.3 | | AT4G14560 | '35S:BatIMS knock-in' vs 'empty vector' | genotype | Transcription profiling by array of Arabidopsis seedlings overexpressing an IPMS gene from Brassica (BatIMS) |
1.3 | | AT4G14560 | '12 day' vs '7 day' in 'wild type' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
-1.3 | | AT4G14560 | 'pBeaconRFP_IAA19mll overexpressor; none' vs 'pMON999_mRFP control vector; none' | compound, genotype | Transcription profiling by array of Arabidopsis overexpressing IAA7mll or IAA19mll after treatment with indole-3-acetic acid |
-1.3 | | AT4G14560 | '50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf' | compound, genotype, organism part | Transcription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid |
1.3 | | AT4G14560 | 'apl mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis phloem from Altered Phloem Development (APL) mutants and wild type controls |
-1.2 | | AT4G14560 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
-1.2 | | AT4G14560 | 'bli-1 -/-; ire1b -/-' vs 'wild type genotype' | genotype | BLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana |
1.2 | | AT4G14560 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.2 | | AT4G14560 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.2 | | AT4G14560 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1.2 | | AT4G14560 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
-1.2 | | AT4G14560 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.2 | | AT4G14560 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
-1.2 | | AT4G14560 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
1.2 | | AT4G14560 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
-1.2 | | AT4G14560 | 'abscisic acids; 50 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress |
1.2 | | AT4G14560 | 'Erysiphe orontii' vs 'none' at '96 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
-1.2 | | AT4G14560 | 'RNAi-MBS2/mbs1-1 knockdown' vs 'wild type genotype' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.1 | | AT4G14560 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
-1.1 | | AT4G14560 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-1.1 | | AT4G14560 | 'glu1-2 mutant' vs 'wild type' in 'rosette leaf' | genotype, organism part | Transcription profiling by array of Arabidopsis mutant for Fd-GOGAT1/GLU1 |
-1.1 | | AT4G14560 | 'clf28 mutant' vs 'wild type' in 'shoot' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
-1.1 | | AT4G14560 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-1.1 | | AT4G14560 | 'letm1-2 homozygous, letm2-1 heterozygous double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2 |
-1.1 | | AT4G14560 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
-1.1 | | AT4G14560 | 'PIF5 overexpressing; high red/far-red light ratio' vs 'wild type; high red/far-red light ratio' | genotype, treatment | Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light |
-1.1 | | AT4G14560 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
1.1 | | AT4G14560 | 'pif1pif3pif4pif5 (pifq) mutant; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour' vs 'wild type; 2 days in continuous light plus Red/Far-Red ratio 0.006' at '24 hour' | genotype, light, time | Expression data from WT (Columbia) and pifq (pif1pif3pif4pif5) mutant Arabidopsis seedlings |
1.1 | | AT4G14560 | 'arsenic; 200 micromolar' vs 'none' in 'Col-0' | compound, ecotype | Transcriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis |
1.1 | | AT4G14560 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
1.1 | | AT4G14560 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 hrpA mutant' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
-1.1 | | AT4G14560 | 'pBeaconRFP_GR::bZIP1; Treated with cycloheximide, 10 uM dexamethasone in ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' vs 'empty vector; Treated with cycloheximide, ethanol, 20 mM KNO3 and 20 mM NH4NO3 solution' | genotype, treatment | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
-1.1 | | AT4G14560 | 'pvip1;pvip2' vs 'none' | rnai, RNA interference | Transcription profiling by array of Arabidopsis after RNAi-mediated knock-down of pvip1 and pvip2 |
1.1 | | AT4G14560 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of injured Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
-1.1 | | AT4G14560 | 'Columbia-0; alx8' vs 'Columbia-0; wild type' | ecotype, genotype | Transcription profiling of Arabidopsis wild type and SAL1 mutant plants grown under normal conditions |
-1.1 | | AT4G14560 | 'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.1 | | AT4G14560 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.1 | | AT4G14560 | 'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark' | RNA, time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with white light |
1.1 | | AT4G14560 | 'oxt6 mutant' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
1.1 | | AT4G14560 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.1 | | AT4G14560 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1.1 | | AT4G14560 | 'val1 mutant' vs 'wild type' at '13 days after pollination' | genotype, sampling time point | Transcription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos |
1.1 | | AT4G14560 | '60 minute' vs '0 minute' in 'indole-3-acetic acid; arf7, arf19 double knockout; root meristem' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
-1.1 | | AT4G14560 | 'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
-1.1 | | AT4G14560 | 'wild_type; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
-1.1 | | AT4G14560 | '100 micromolar; fenclorim' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1.1 | | AT4G14560 | '21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000' | infect, time | Transcription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000 |
-1.1 | | AT4G14560 | 'light pulse in the middle of the day' vs 'day time control' | growth condition | RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock |
1.1 | | AT4G14560 | 'Erysiphe orontii' vs 'none' at '120 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
1.1 | | AT4G14560 | 'NaCl' vs 'control' in 'cortex cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
1 | | AT4G14560 | 'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar' | stimulus | Ethylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway. |
1 | | AT4G14560 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1 | | AT4G14560 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
1 | | AT4G14560 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
1 | | AT4G14560 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '8 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
-1 | | AT4G14560 | 'benzothiadiazole' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis overexpressing mil4 after treatment with benzothiadiazole |
-1 | | AT4G14560 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
1 | | AT4G14560 | 'lec2-1 mutant' vs 'wild type' in '12 day; Ws' | age, ecotype, genotype | Gene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1] |
-1 | | AT4G14560 | 'wounding' at '1 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-1 | | AT4G14560 | '35 micromolar; N-lauroylethanolamine (NAE(12:0))' vs '0.05 percent; DMSO' | compound | Transcription profiling of Arabidopsis seedlings treated with NAE(12:0) |
-1 | | AT4G14560 | 'locally damaged by leafminer' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis leaves with localised or systemic damage by leafminer Liriomyza huidobrensis |
-1 | | AT4G14560 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1 | | AT4G14560 | '35S::HA::RAP2.12' vs 'wild type' in 'aerobic' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing RAP2.12 or with RAP2.12 and RAP2.2 silenced after growth in hypoxic conditions |
1 | | AT4G14560 | 'indole-3-acetic acid' vs 'none' in 'nph4-1 arf19-1' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for nph4 or arf19 or both after treatment with indole-3-acetic acid |
-1 | | AT4G14560 | 'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
1 | | AT4G14560 | '35S:MBS1 overexpression' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
-1 | | AT4G14560 | 'brm-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants |
-1 | | AT4G14560 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1 | | AT4G14560 | 'wounding; 6 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1 | | AT4G14560 | 'homozygous AtCesA4' vs 'heterozygous AtCesA4' | genotype | Transcription profiling by array of Arabidopsis cellulose synthase mutants |
1 | | AT4G14560 | 'drought; abi1td' at '0 hour' vs 'control; abi1td' at '0 hour' | environmental stress, genotype, time | Transcription profiling of Arabidopsis wild type and abi1td mutant plants stressed by ozone or drought to better understand ABA signalling |
-1 | | AT4G14560 | 'antimycin A; 50 micromolar' vs 'water' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
-1 | | AT4G14560 | 'arf6-2, arf8-3 double mutant' vs 'wild type' at 'petal differentiation and expansion stage' | developmental stage, genotype | Transcription profiling by array of Arabidopsis flowers from arf6-2, arf8-3 double mutant and myb21-5, myb24-5 double mutant |
-1 | | AT4G14560 | 'mbs1-1 mutant' vs 'wild type genotype' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1 | | AT4G14560 | 'pao-1 mutant' vs 'wild type genotype' in 'none' at '0 day' | environmental stress, genotype, time | Transcriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway |
-1 | | AT4G14560 | 'sucrose; 1 percent' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
1 | | AT4G14560 | 'Agrobacterium tumefaciens C58' vs 'none' | infect | Transcription profiling by array of Arabidopsis after infection with different strains of Agrobacterium tumefaciens |
1 | | AT4G14560 | 'AB' vs 'wild type genotype' | genotype | Transcription profiling by array of three Arabidopsis knockouts against wild type controls to study the influence of ubiquitin-like proteases in plant transcriptional modulation |