AT4G16990 (RLM3)

arabidopsis thaliana

disease resistance protein (TIR-NBS class), putative

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Arabidopsis thaliana
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Showing 47 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
3.5102 × 10-9-7
AT4G16990'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.0436 × 10-8-6.8
AT4G16990'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3693 × 10-105.5
AT4G16990'12 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
00
Log2-fold change
4.9
AT4G16990'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
2.0853 × 10-94.8
AT4G16990'10 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.041 × 10-29-4.6
AT4G16990'DCC1 mutant' vs 'wild type genotype'genotypeThioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
Adjusted p-valueLog2-fold change
1.5379 × 10-4-4.6
AT4G16990'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
1.9513 × 10-74.5
AT4G16990'Cal-0' vs 'Col-4'ecotypeTranscription profiling by array of Arabidopsis Col-4 and Cal-0 ecotypes
Adjusted p-valueLog2-fold change
7.3504 × 10-54.4
AT4G16990'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
6.0783 × 10-9-4.1
AT4G16990'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.7042 × 10-1473.8
AT4G16990'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
8.9526 × 10-29-3.7
AT4G16990'ANAC017 OEa' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
4.7918 × 10-15-3.6
AT4G16990'ANAC017 OEb' vs 'wild type genotype' at '3 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
1.3287 × 10-33.3
AT4G16990'tcx2; WOX5:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
3.2975 × 10-73.2
AT4G16990'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Tsu-1' ecotypeecotype, organism part, growth condition, timeTranscription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium
Adjusted p-valueLog2-fold change
1.6613 × 10-3-3.2
AT4G16990'mbd11 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.5421 × 10-7-3
AT4G16990'RBRcs mutant' vs 'wild type' in 'sucrose; 1 percent'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.0679 × 10-3-2.9
AT4G16990'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
7.3174 × 10-6-2.8
AT4G16990'sucrose; 1 percent' vs 'none' in 'RBRcs mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
8.794 × 10-3-2.8
AT4G16990'pao-1 mutant' vs 'wild type genotype' in 'continuous dark (no light) regimen' at '2 day'environmental stress, genotype, timeTranscriptome profiling of Arabidopsis mutants of the chlorophyll degradation PAO/Phyllobilin pathway
Adjusted p-valueLog2-fold change
4.3049 × 10-72.7
AT4G16990'rice OsTOP6A1 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing rice OsTOP6A1
Adjusted p-valueLog2-fold change
1.1498 × 10-29-2.6
AT4G16990'atprmt5 mutant' vs 'wild type genotype'genotypeAtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq
Adjusted p-valueLog2-fold change
2.4551 × 10-32.6
AT4G16990'rps2 mutant' vs 'wild type genotype' in 'Pseudomonas syringae pv. maculicola carrying AvrRpt2' at '10 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
8.8239 × 10-3-2.5
AT4G16990'100 micromolar; fenclorim' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
3.5333 × 10-3-2.4
AT4G16990'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.5025 × 10-22.4
AT4G16990'pvip1; pvip2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for pvip1 and pvip2
Adjusted p-valueLog2-fold change
4.5294 × 10-4-2.3
AT4G16990'brm-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
1.9548 × 10-6-2.2
AT4G16990'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.1068 × 10-3-2.2
AT4G16990'low water potential stress' vs 'control' in 'wild type'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
1.1082 × 10-2-2.2
AT4G16990'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.5097 × 10-2-2.2
AT4G16990'arr22-ox' vs 'wild type' in 'none'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
2.1779 × 10-7-2.1
AT4G16990'auxin' vs 'none' in '7 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
1.0278 × 10-6-2.1
AT4G16990'auxin' vs 'none' in '35 day'age, growth conditionTranscription profiling by array of young and old hypocotyls from Arabidopsis after treatment with auxin
Adjusted p-valueLog2-fold change
2.7071 × 10-62.1
AT4G16990'oxt6:AtCPSF30' vs 'wild type'genotypeA polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3078 × 10-5-2.1
AT4G16990'low water potential stress' vs 'control' in 'hai1-2 mutant'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
7.75 × 10-5-2.1
AT4G16990'ga1-3, brm-1 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ga1-3 mutants, brm-1 mutants and ga1-3, brm-1 double mutants
Adjusted p-valueLog2-fold change
4.5195 × 10-2-2.1
AT4G16990'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
6.5945 × 10-902
AT4G16990'mechanical stimulus - water from spray bottle; 25 minute' vs 'none; 0 minute' in 'wild type genotype'genotype, stimulus, timeRNAseq analysis of early touch responses in myc234 mutants in Arabidopsis
Adjusted p-valueLog2-fold change
2.5282 × 10-432
AT4G16990'mechanical stimulus - water from spray bottle; 25 minute' vs 'none; 0 minute' in 'myc324'genotype, stimulus, timeRNAseq analysis of early touch responses in myc234 mutants in Arabidopsis
Adjusted p-valueLog2-fold change
6.2161 × 10-9-2
AT4G16990'Mir-0 x Se-0' vs 'Se-0'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
2.6363 × 10-7-2
AT4G16990''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
3.0407 × 10-4-2
AT4G16990'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
2.8521 × 10-3-2
AT4G16990'35S::MIF1; dark' vs '35S::MIF1; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.019 × 10-24-1.9
AT4G16990'ANAC017 OEb' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
8.0917 × 10-651.8
AT4G16990'5 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
4.1831 × 10-15-1.8
AT4G16990'ANAC017 OEa' vs 'wild type genotype' at '1 day'genotype, timeDark-induced senescence time course of ANAC017 mutant lines in Arabidopsis
Adjusted p-valueLog2-fold change
4.061 × 10-9-1.8
AT4G16990'arr21c overexpressing line' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing arr21c
Adjusted p-valueLog2-fold change
3.7355 × 10-4-1.8
AT4G16990'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
2.3662 × 10-2-1.8
AT4G16990'wounding; 3 hour' vs 'none; 0 hour' in 'DMSO'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
1.4659 × 10-8-1.7
AT4G16990'ethanol' at '4 hour' vs 'control' at '0 hour'compound, timeTranscription profiling by array of Arabidopsis XW119 seedlings after induction with ethanol
Adjusted p-valueLog2-fold change
3.9001 × 10-7-1.7
AT4G16990'3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
1.0683 × 10-61.7
AT4G16990'Mir-0 x Se-0' vs 'Mir-0'ecotypeTranscription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents
Adjusted p-valueLog2-fold change
3.0106 × 10-61.7
AT4G16990'1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
1.098 × 10-3-1.7
AT4G16990'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
2.6917 × 10-2-1.7
AT4G16990'Botrytis cinerea' vs 'none' at '48 hour'infect, timeTranscription profiling by array of Arabidopsis after infection with Botrytis cinerea
Adjusted p-valueLog2-fold change
1.0873 × 10-90-1.6
AT4G16990'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
3.9658 × 10-71.6
AT4G16990'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant'genotype, infectTranscription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2
Adjusted p-valueLog2-fold change
2.7965 × 10-4-1.6
AT4G16990'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '60 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
3.7539 × 10-3-1.6
AT4G16990'water deprivation' vs 'control'growth conditionTranscription profiling by array of Arabidopsis after water deprivation
Adjusted p-valueLog2-fold change
1.9993 × 10-811.5
AT4G16990'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.1312 × 10-491.5
AT4G16990'10 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
5.1693 × 10-35-1.5
AT4G16990'brm-1 ref6-1' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis
Adjusted p-valueLog2-fold change
3.5022 × 10-6-1.5
AT4G16990'Tsu-1' vs 'Col-0'ecotypeTranscription profiling by array of Arabidopsis ecotypes Col-0, Ts-1, Tsu-1 and Ts-1 and Tsu-1 crossed with Col-0
Adjusted p-valueLog2-fold change
4.5035 × 10-61.5
AT4G16990'vtc1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for vtc1 or abi4
Adjusted p-valueLog2-fold change
7.4891 × 10-51.5
AT4G16990'OsSAP11 transgenic' vs 'wild type'genotypeRice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants
Adjusted p-valueLog2-fold change
1.6735 × 10-4-1.5
AT4G16990'essp3 and brm mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis seedlings mutant for essp3 and brm
Adjusted p-valueLog2-fold change
4.9326 × 10-4-1.5
AT4G16990'AP1::AtIPT4 transgenic plant' vs 'wild type'genotypeTranscription profiling by array of young inflorescences of AP1∷AtIPT4 Arabidopsis thaliana transgenic plants to identify the candidate genes responsive to cytokinin
Adjusted p-valueLog2-fold change
1.1799 × 10-3-1.5
AT4G16990'agl15-4; agl18-1 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis
Adjusted p-valueLog2-fold change
3.7574 × 10-31.5
AT4G16990'4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type'genotype, growth conditionGene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
Adjusted p-valueLog2-fold change
1.5989 × 10-2-1.5
AT4G16990'dexamethasone' vs 'no compound' in 'GVGdvl4'compound, genotypeTranscription profiling by array of Arabidopsis overexpressing dvl4 after treatment with dexamethasone
Adjusted p-valueLog2-fold change
2.1281 × 10-2-1.5
AT4G16990'100 micromolar; fenclorim' vs 'control' at '4 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
5.4457 × 10-931.4
AT4G16990'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.1495 × 10-691.4
AT4G16990'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1219 × 10-8-1.4
AT4G16990'excess light; none; 2 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
5.8407 × 10-8-1.4
AT4G16990'drought stress' vs 'none' in 'control' at '2 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
2.7719 × 10-6-1.4
AT4G16990'3 percent glucose' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
6.1987 × 10-4-1.4
AT4G16990'3% glucose' at '4 hour' vs 'control' at '0 hour'growth condition, timeTranscription profiling by array of Arabidopsis after treatment with glucose, mannose and abcissic acid
Adjusted p-valueLog2-fold change
1.8219 × 10-3-1.4
AT4G16990'fug1-3 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
1.9847 × 10-3-1.4
AT4G16990'Agrobacterium tumefaciens C58' vs 'none'infectTranscription profiling by array of Arabidopsis after infection with Agrobacterium tumefaciens and tumour development
Adjusted p-valueLog2-fold change
2.1401 × 10-31.4
AT4G16990'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type'genotypeTranscriptome profiling of LecRKVI.2 over-expressor plants.
Adjusted p-valueLog2-fold change
9.068 × 10-3-1.4
AT4G16990'AGL15 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis
Adjusted p-valueLog2-fold change
1.8455 × 10-841.3
AT4G16990'trichostatin; 1 micromolar' vs 'none' in 'pUBI10::mCherry-GR-linker-WUS'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
7.0814 × 10-661.3
AT4G16990'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.507 × 10-57-1.3
AT4G16990'salt and heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
7.4583 × 10-441.3
AT4G16990'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.0987 × 10-401.3
AT4G16990'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.3709 × 10-40-1.3
AT4G16990'mannitol; 300 millimolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.043 × 10-7-1.3
AT4G16990'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day'genotype, timeTranscription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture.
Adjusted p-valueLog2-fold change
2.5639 × 10-7-1.3
AT4G16990'30% inhibition from optimum photosynthesis temperature' vs 'baseline growth temperature'growth conditionTranscription profiling by array of Arabidopsis after growth at different temperatures
Adjusted p-valueLog2-fold change
1.2374 × 10-51.3
AT4G16990'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
5.0589 × 10-4-1.3
AT4G16990'drought stress' vs 'none' in 'ABF3 overexpression' at '24 hour'environmental stress, genotype, timeTranscription profiling by array of Arabidopsis thaliana transgenic plants overexpressing ABF3 under drought stress
Adjusted p-valueLog2-fold change
1.0549 × 10-3-1.3
AT4G16990'letm1-2 heterozygous, letm2-1 homozygous double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
1.5581 × 10-31.3
AT4G16990'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
1.5822 × 10-3-1.3
AT4G16990'Pseudomonas syringae pv. tomato expressing HopZ1a:C216A' vs 'MgCl2' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
1.9774 × 10-2-1.3
AT4G16990'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '24 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
2.4949 × 10-951.2
AT4G16990'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.3906 × 10-611.2
AT4G16990'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1513 × 10-24-1.2
AT4G16990'brm-1' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis
Adjusted p-valueLog2-fold change
2.1354 × 10-21-1.2
AT4G16990'ozone; 350 nanoliter' vs 'none' in 'Cvi-0'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
4.4579 × 10-61.2
AT4G16990'siz1-3' vs 'wild type' in 'drought'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for siz1 after exposure to drought
Adjusted p-valueLog2-fold change
9.519 × 10-6-1.2
AT4G16990'3% glucose; 0.1% epibrassinolide' vs 'none'growth conditionGenome wide analysis of glucose brassinosteroid interaction in Arabidopsis
Adjusted p-valueLog2-fold change
9.531 × 10-61.2
AT4G16990'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wild type'genotype, infectTranscription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2
Adjusted p-valueLog2-fold change
7.7298 × 10-51.2
AT4G16990'gir1 mutant; none' vs 'wild type; none' in 'flower'compound, genotype, organism partGene expression profile in root and flower of gir1 mutant
Adjusted p-valueLog2-fold change
1.9497 × 10-4-1.2
AT4G16990'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
1.5791 × 10-3-1.2
AT4G16990'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium and resupplied with Pi for 4 h'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
3.0761 × 10-3-1.2
AT4G16990'clf28 mutant' vs 'wild type' in 'root'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
4.7656 × 10-3-1.2
AT4G16990'35S:BatIMS knock-in' vs 'empty vector'genotypeTranscription profiling by array of Arabidopsis seedlings overexpressing an IPMS gene from Brassica (BatIMS)
Adjusted p-valueLog2-fold change
2.3007 × 10-2-1.2
AT4G16990'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
3.7961 × 10-311.1
AT4G16990'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1279 × 10-30-1.1
AT4G16990'heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
2.8278 × 10-271.1
AT4G16990'7 day' vs '0 day'timeTranscription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
Adjusted p-valueLog2-fold change
5.241 × 10-18-1.1
AT4G16990'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
2.85 × 10-13-1.1
AT4G16990'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
8.0778 × 10-6-1.1
AT4G16990'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
1.3303 × 10-41.1
AT4G16990'rps2 mutant' vs 'wild type genotype' in 'none' at '0 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
2.6456 × 10-31.1
AT4G16990'far-red light pulse followed by darkness' vs 'constant white light' in 'leaf without petiole'growth condition, organism partTranscription profiling by array of Arabidopsis subjected to far-red light pulse treatment
Adjusted p-valueLog2-fold change
1.0844 × 10-21.1
AT4G16990'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
1.1995 × 10-2-1.1
AT4G16990'from low light to high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
1.393 × 10-2-1.1
AT4G16990'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
1.7632 × 10-2-1.1
AT4G16990'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T8”)'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation
Adjusted p-valueLog2-fold change
2.403 × 10-2-1.1
AT4G16990'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
3.353 × 10-21.1
AT4G16990'8 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
8.6588 × 10-371
AT4G16990'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.6634 × 10-291
AT4G16990'12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
9.3041 × 10-19-1
AT4G16990'drought environment' vs 'none' in 'wild type genotype'environmental stress, genotypeTranscriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment)
Adjusted p-valueLog2-fold change
2.8222 × 10-61
AT4G16990'double mutant at3g03940/at518190 knockdown' vs 'wild type'genotypeOsmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression]
Adjusted p-valueLog2-fold change
1.6897 × 10-5-1
AT4G16990'20% inhibition from optimum photosynthesis temperature' vs 'baseline growth temperature'growth conditionTranscription profiling by array of Arabidopsis after growth at different temperatures
Adjusted p-valueLog2-fold change
3.5126 × 10-51
AT4G16990'Ler x C24 F1 hybrid' vs 'C24'genotypeTranscription profiling by high throughput sequencing of Arabidopsis F1 hybrids from crosses between C24, Landsberg erecta (Ler) and Columbia (Col)
Adjusted p-valueLog2-fold change
3.8706 × 10-5-1
AT4G16990'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
1.6544 × 10-41
AT4G16990'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
1.852 × 10-4-1
AT4G16990'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
2.1713 × 10-41
AT4G16990'met1 mutant' vs 'wild type' at '4 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
1.2804 × 10-31
AT4G16990'OsRLCK253 transgenic' vs 'wild type'genotypeRice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants
Adjusted p-valueLog2-fold change
3.0152 × 10-31
AT4G16990'salicylic acid' vs 'control' in 'npr1 sni1 brca2a mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for npr1, sni1, ssn2 and/or brca2a after treatment with salicylic acid
Adjusted p-valueLog2-fold change
9.4854 × 10-3-1
AT4G16990'osmotic stress (3h with 0.3 molar mannitol)' vs 'control' in 'leaf'growth condition, organism partTranscriptome Profiling of Roots and leaves Under High Osmotic Stress in Arabidopsis
Adjusted p-valueLog2-fold change
1.1188 × 10-2-1
AT4G16990'sodium nitroprusside' vs 'none'compoundExpression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO
Adjusted p-valueLog2-fold change
1.4998 × 10-21
AT4G16990'gapcp mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for gapcp
Adjusted p-valueLog2-fold change
1.8621 × 10-2-1
AT4G16990'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none'time, treatmentExpression profiling of Col-0 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
2.0024 × 10-21
AT4G16990'Cax1/Cax3 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis cax1/cax3 double mutants
Adjusted p-valueLog2-fold change
2.8327 × 10-2-1
AT4G16990'flg22' vs 'water' at '3 hour'compound, timeTranscription profiling by array of Arabidopsis after treatment with oligogalacturonides
Adjusted p-valueLog2-fold change
3.9463 × 10-2-1
AT4G16990'gun1-103 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis