-8.3 | | CRK7 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
7.5 | | CRK7 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
7.3 | | CRK7 | ''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype' | genotype, infect, time | Expression profiling of Col-0 and rps2 treated with Psm:AvrRpt2 |
-6.9 | | CRK7 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
6.9 | | CRK7 | 'Blumeria graminis f. sp. hordei K1; avirulent; 18 hour' vs 'none; wild type phenotype; 18 hour' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
6.7 | | CRK7 | 'KZ-10 x Mrk-0' vs 'Mrk-0' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
6.6 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'control' in 'coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
6.2 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
6.1 | | CRK7 | 'KZ-10 x Mrk-0' vs 'KZ-10' | ecotype | Transcription profiling of Arabidopsis KZ-10/Mrk-0 hybrids and their parents |
6 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
6 | | CRK7 | 'Mir-0 x Se-0' vs 'Mir-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
6 | | CRK7 | 'Mir-0 x Se-0' vs 'Se-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
5.9 | | CRK7 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wrky33 mutant; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
-5.9 | | CRK7 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
5.9 | | CRK7 | 'Blumeria graminis f. sp. hordei A6; virulent; 18 hour' vs 'none; wild type phenotype; 18 hour' | infect, phenotype, time | Time course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant. |
5.9 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
5.9 | | CRK7 | 'GST-NPP1 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
5.8 | | CRK7 | 'siz1-3' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
5.8 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'pen2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
5.7 | | CRK7 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-5.7 | | CRK7 | 'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour' | phenotype, time | Transcription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response |
5.7 | | CRK7 | 'powdery mildew infected' vs 'uninfected' in 'none' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
5.6 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp1 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
5.5 | | CRK7 | 'mkk1;mkk2 knockout; none' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
5.5 | | CRK7 | 'HrpZ 10uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
5.4 | | CRK7 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-5.4 | | CRK7 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
5.3 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky75 mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
5.3 | | CRK7 | 'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
5.2 | | CRK7 | 'Bla-1 x Hh-0' vs 'Bla-1' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
4.9 | | CRK7 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-4.9 | | CRK7 | 'chr11-1, chr17-1 double mutant' vs 'wild type' at '0 day' | genotype, time | Transcription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture. |
4.9 | | CRK7 | 'wild type; Golovinomyces orontii infection' vs 'wild type; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
4.8 | | CRK7 | 'Te; 350 ppb ozone exposure for 2hr' vs 'Te; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-4.8 | | CRK7 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-4.8 | | CRK7 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
4.8 | | CRK7 | 'Pseudomonas syringae pv. Maculicola with effector AvrRpt2' at '6 hour' vs 'none' | time, treatment | Expression profiling of Col-0 treated with Psm:AvrRpt2 |
4.7 | | CRK7 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'agb1-1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
4.6 | | CRK7 | 'nlp20; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
4.6 | | CRK7 | 'dexamethasone' vs 'none' in 'MKK9DD mutant; control' | compound, genotype, growth condition | Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes |
4.5 | | CRK7 | 'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-4.5 | | CRK7 | 'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
4.5 | | CRK7 | 'siz1-3' vs 'wild type' in 'drought' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for siz1 after exposure to drought |
4.5 | | CRK7 | 'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type' | genotype | Transcriptome profiling of LecRKVI.2 over-expressor plants. |
4.4 | | CRK7 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
4.4 | | CRK7 | 'ozone; 350 nanoliter' vs 'none' in 'Shahdara' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
4.4 | | CRK7 | 'wild type; Pseudomonas syringae pv. maculicola str. ES4326' vs 'wild type; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
4.4 | | CRK7 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
4.4 | | CRK7 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
4.3 | | CRK7 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
4.3 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wrky25, wrky33 double mutant' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
4.3 | | CRK7 | 'CT101; 350 ppb ozone exposure for 2hr' vs 'CT101; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-4.3 | | CRK7 | 'microRNA targeting Umkirch-3 allele of At5g41750' vs 'control' | genotype | Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants compared to siblings carrying a microRNA targeting the Umkirch-3 allele of At5g41750 |
4.2 | | CRK7 | 'wild type; Botrytis cinerea 2100' vs 'wild type; mock' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
4.2 | | CRK7 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
4.2 | | CRK7 | 'mkk2 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk2 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
4.2 | | CRK7 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-4.2 | | CRK7 | '0.1 mM nitrate' vs '10 mM nitrate' in 'wild type genotype' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
4.1 | | CRK7 | 'pipecolic acid; 10 micromolar' vs 'none' in 'wild type genotype' | block, compound, genotype | Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid |
4.1 | | CRK7 | 'Piereis brassicae; eggs only' vs 'none; none' in 'mid rosette growth stage; leaf' | developmental stage, infect, organism part, stimulus | RNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive) |
4.1 | | CRK7 | 'Blumeria graminis f.sp. hordei' vs 'none' in 'ataf1-1' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei |
4.1 | | CRK7 | 'Erysiphe orontii' vs 'none' at '120 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
3.9 | | CRK7 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3.9 | | CRK7 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
3.9 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for tga2 tga5 tga6' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
3.9 | | CRK7 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
3.9 | | CRK7 | 'sid2-1 mutant; Pseudomonas syringae pv. maculicola str. ES4326' vs 'sid2-1 mutant; mock' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance |
3.9 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'none' in 'wild type' | environmental stress, genotype | Transcription profiling by high throughput sequencing of Arabidopsis wrky75 mutant and wrky25, wrky33 double mutant in response to ozone treatment |
3.9 | | CRK7 | 'Plectosphaerella cucumerina inoculation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina |
3.9 | | CRK7 | 'powdery mildew infected' vs 'uninfected' in 'syringolin; 20 micromolar' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
-3.8 | | CRK7 | 'fmo1 mutant' vs 'wild type genotype' in 'pipecolic acid; 10 micromolar' | block, compound, genotype | Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid |
3.8 | | CRK7 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
3.6 | | CRK7 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3.6 | | CRK7 | 'S-nitrosocysteine; 1 millimolar' vs 'buffer' | compound | Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO) |
3.6 | | CRK7 | 'exposed to 10 degree Celsius; gemin2 mutant; 24 hour' vs 'control; gemin2 mutant' | environmental stress, genotype, time | Genome-wide analysis of wild type and gemin2 mutant plants [cold exposure] |
3.6 | | CRK7 | 'csn4-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3.6 | | CRK7 | 'wild type; Pseudomonas syringae pv. tomato DC3000' vs 'wild type; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
3.5 | | CRK7 | '24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3.5 | | CRK7 | 'mannitol; 300 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
3.5 | | CRK7 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
3.5 | | CRK7 | 'pvip1;pvip2' vs 'none' | rnai, RNA interference | Transcription profiling by array of Arabidopsis after RNAi-mediated knock-down of pvip1 and pvip2 |
-3.5 | | CRK7 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 5 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
3.5 | | CRK7 | 'ozone' vs 'control' in 'G-protein knockout mutant' at '48 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis G-protein knockout plants in response to ozone |
3.5 | | CRK7 | 'Pseudomonas syringae ES4326' vs 'none' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
3.4 | | CRK7 | 'pdx3-3 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
3.4 | | CRK7 | 'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
3.4 | | CRK7 | 'Turnip mosaic virus' vs 'mock' in 'zone 0' | infect, sampling site | Transcription profiling by of Arabidopsis leaves after infection with Potyvirus turnip mosaic virus |
3.3 | | CRK7 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3.3 | | CRK7 | 'cs26 mutant' vs 'wild type' in 'long day photoperiod' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods |
3.3 | | CRK7 | 'mkk1 knockout; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'mkk1 knockout; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
3.3 | | CRK7 | 'eds16 mutant; Golovinomyces orontii infection' vs 'eds16 mutant; no infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
3.3 | | CRK7 | 'camta2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
3.3 | | CRK7 | 'cabbage leaf curl virus infected' vs 'mock infected' | infect | Transcription profiling by array of Arabidopsis infected with geminivirus Cabbage leaf curl virus |
3.3 | | CRK7 | 'flg22' vs 'none' in '35S::miR393' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
3.3 | | CRK7 | 'dde2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3.2 | | CRK7 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
3.2 | | CRK7 | 'powdery mildew' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
3.2 | | CRK7 | 'bak1-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
3.2 | | CRK7 | 'Phytophthera infestans' vs 'none' at '12 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
3.1 | | CRK7 | 'C24; 350 ppb ozone exposure for 2hr' vs 'C24; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
3.1 | | CRK7 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
3.1 | | CRK7 | "rps10 RNAi; late onset of silencing (P3)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
3.1 | | CRK7 | 'camta1/2/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
3.1 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp140 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
3.1 | | CRK7 | 'MtNPF1.7 expression' vs 'wild type genotype' in '0.1 mM nitrate' | genotype, growth condition | Transcriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7 |
3.1 | | CRK7 | 'wild_type; benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester' vs 'wild_type; none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH |
3.1 | | CRK7 | 'nudt7-1' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
3.1 | | CRK7 | 'sni-1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for sni1 |
3.1 | | CRK7 | 'Erysiphe orontii' vs 'none' at '96 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
-3.1 | | CRK7 | 'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
3.1 | | CRK7 | '4 degree celsius' vs '20 degree celsius' in 'Columbia-0' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
3.1 | | CRK7 | 'ein2-1; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection' | genotype, infect, sampling time point | Responses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection |
3 | | CRK7 | 'benzothiadiazole' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis overexpressing mil4 after treatment with benzothiadiazole |
3 | | CRK7 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
3 | | CRK7 | 'MYB96 overexpression' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants |
3 | | CRK7 | 'primisulfuron' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with primisulfuron herbicide |
3 | | CRK7 | '4 degree celsius' vs '20 degree celsius' in 'Coimbra' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
3 | | CRK7 | 'ozone' vs 'control' in 'wild type' at '48 hour' | environmental stress, genotype, time | Transcription profiling by array of Arabidopsis G-protein knockout plants in response to ozone |
3 | | CRK7 | '5 day; naphthaleneacetic acid' vs '2 day; naphthaleneacetic acid' in 'stem tissue' | growth condition, organism part, time | Transcription profiling by array of Arabidopsis stem tissues after treatment with naphthaleneacetic acid |
2.9 | | CRK7 | 'low phosphate' vs 'control' in 'none; wild type' | compound, genotype, growth condition | Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes |
2.9 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'wild type' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2.9 | | CRK7 | 'Bla-1 x Hh-0' vs 'Hh-0' | ecotype | Transcription profiling of Arabidopsis Bla-1/Hh-0 hybrids, Mir-0/Se-0 hybrids and their corresponding parents |
2.9 | | CRK7 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
2.9 | | CRK7 | 'AFB1 overexpression; Pseudomonas syringae pv. tomato DC3000' vs 'AFB1 overexpression; none' | genotype, infect | Transcription profiling by array of Arabidopsis overexpressing miR393 or AFB1 under the control of the 35S promoter after infection with Pseudomonas syringae pv. tomato DC3000 |
2.9 | | CRK7 | 'Cax1/Cax3 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cax1/cax3 double mutants |
2.8 | | CRK7 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.8 | | CRK7 | 'Phytophthora parasitica' vs 'none' in 'wild type genotype' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-2.8 | | CRK7 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.8 | | CRK7 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
-2.8 | | CRK7 | 'pepr1-1 Pepr2-3; Pep2' at '2 hour' vs 'wild type; Pep2' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
2.8 | | CRK7 | 'powdery mildew' vs 'none' in 'pmr4-1' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
2.8 | | CRK7 | 'vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
2.8 | | CRK7 | '350 ppb ozone exposure for 2hr' vs 'control' in 'Col-0 control genotype for coi1-16 ein2 sid2' | genotype, growth condition | RNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling |
2.8 | | CRK7 | 'Col-0; 350 ppb ozone exposure for 2hr' vs 'Col-0; control' | genotype, treatment | Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana |
-2.7 | | CRK7 | 'sd1-29' vs 'wild type genotype' in '3-OH-FA; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.7 | | CRK7 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutant ref4-3 and suppressors thereof |
-2.7 | | CRK7 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.7 | | CRK7 | 'Pseudomonas syringae pv. tomato expressing HopZ1a' vs 'MgCl2' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.7 | | CRK7 | 'abi4 vtc2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2 |
2.7 | | CRK7 | 'camta1/3 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2.6 | | CRK7 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.6 | | CRK7 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
2.6 | | CRK7 | 'DEWAX2 overexpression' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems |
2.6 | | CRK7 | 'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Salicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants. |
-2.6 | | CRK7 | 'efr-1' vs 'wild type genotype' in 'elf18; 1 millimolar' at '30 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.6 | | CRK7 | 'Phytophthera infestans' vs 'none' at '6 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
2.6 | | CRK7 | 'pmr5 pmr6 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
-2.6 | | CRK7 | 'water deprivation' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
2.6 | | CRK7 | 'ceh1 mutant' vs 'wild type' | genotype | Transcriptome of Arabidopsis thaliana ceh1 mutant |
2.6 | | CRK7 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
2.6 | | CRK7 | 'polysomal RNA; turnip mosaic virus inoculated' vs 'polysomal RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
2.6 | | CRK7 | 'Turnip mosaic virus' vs 'mock' in 'zone 1' | infect, sampling site | Transcription profiling by of Arabidopsis leaves after infection with Potyvirus turnip mosaic virus |
-2.5 | | CRK7 | 'dja6; dja5 double mutant' vs 'wild type genotype' | genotype | RNA-seq of WT and dja6 dja5 mutant in Arabidopsis thaliana |
2.5 | | CRK7 | 'vtc1' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
2.5 | | CRK7 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
2.5 | | CRK7 | 'Phytophthora parasitica' vs 'none' in 'gsnor1' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
2.5 | | CRK7 | 'AtPep1' vs 'none' | stimulus | RNA-seq of Arabidopsis thaliana seedlings treated with Flg22 or Pep1 |
-2.5 | | CRK7 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 7 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
2.5 | | CRK7 | 'Phytophthera infestans' vs 'none' at '24 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Phytophthera infestans |
2.5 | | CRK7 | 'triazolopyrimidine' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with triazolopyrimidine |
2.5 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp2D mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2.5 | | CRK7 | 'total RNA; turnip mosaic virus inoculated' vs 'total RNA; mock' | RNA, infect | The effect of TuMV on translation initiation in Arabidopsis |
2.5 | | CRK7 | '4 degree celsius' vs '20 degree celsius' in 'Rschew' | ecotype, temperature | Transcription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation |
2.5 | | CRK7 | 'CAP-D3 mutant line SAIL_826_B06' vs 'wild type genotype' | genotype | Influence of CAP-D3 in Arabidopsis thaliana transcription |
2.5 | | CRK7 | 'iron deprivation' vs 'control' in 'wild type; rosette leaf' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for nas4x after iron deprivation |
2.4 | | CRK7 | '12 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
-2.4 | | CRK7 | 'salt and heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
2.4 | | CRK7 | 'water; des1' vs 'water; wild type' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
2.4 | | CRK7 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
2.4 | | CRK7 | 'camta1/2/3 mutant; grown at 22 C and treated at 4 C for 24 hours' vs 'wild type; grown at 22 C and treated at 4 C for 24 hours' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2.4 | | CRK7 | 'C3H15 overexpressor' vs 'wild type' | genotype | Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type |
2.4 | | CRK7 | 'nudt7-1 sid2-1' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
2.4 | | CRK7 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
2.4 | | CRK7 | 'flg22' vs 'none' in '35S::AFB1' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
-2.3 | | CRK7 | 'heat stress' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress |
2.3 | | CRK7 | 'pdx3-4 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pdx3 mutant plants |
2.3 | | CRK7 | 'ozone; 350 nanoliter' vs 'none' in 'Cvi-0' | compound, ecotype | Transcriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity. |
-2.3 | | CRK7 | 'brm-1 ref6-1' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis |
2.3 | | CRK7 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2.3 | | CRK7 | 'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
2.2 | | CRK7 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.2 | | CRK7 | 'lsd1-1' vs 'wild type genotype' in 'none' | compound, genotype | RNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana |
2.2 | | CRK7 | 'camta1/2 mutant; grown at 22 C' vs 'wild type; grown at 22 C' | genotype, growth condition | Expression data from WT, camta1/2, camta1/3, camta2/3, camta1/2/3 mutants |
2.2 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'wild type' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2.1 | | CRK7 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2.1 | | CRK7 | 'swp73b-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis swp73b-1 mutant |
2.1 | | CRK7 | 'iron deprivation' vs. 'control' at '24 hours' in 'shoot' of 'Tsu-1' ecotype | ecotype, organism part, growth condition, time | Transcription profiling by array of Arabidopsis Kas-1 and Tsu-1 grown in iron-deficient medium |
-2.1 | | CRK7 | 'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-2.1 | | CRK7 | 'oxt6:AtCPSF30' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
2.1 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '6 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
2.1 | | CRK7 | 'ANAC017 OEa' vs 'wild type genotype' at '1 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-2.1 | | CRK7 | 'oxt6 mutant' vs 'wild type' | genotype | A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana |
2.1 | | CRK7 | 'pho1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis phosphate deficient mutant pho1 |
2 | | CRK7 | '18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent' | genotype, infect, phenotype, time | Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
2 | | CRK7 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
2 | | CRK7 | 'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
2 | | CRK7 | 'ref4-3' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
2 | | CRK7 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
-2 | | CRK7 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
2 | | CRK7 | 'double mutant APK1/APK2' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for apk1 and apk2 |
-2 | | CRK7 | 'cs26 mutant' vs 'wild type' in 'short day photoperiod' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana leaves after long or short photoperiods |
2 | | CRK7 | 'sulfometuron methyl' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with sulfometuron methyl herbicide |
-2 | | CRK7 | 'rlp23-1' vs 'wild type genotype' in 'nlp20; 1 millimolar' at '30 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
2 | | CRK7 | 'Flg-22 1uM' vs 'water' at '4 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
2 | | CRK7 | 'edr1 mutant' vs 'wild type' in 'Golovinomyces cichoracearum' at '36 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
2 | | CRK7 | 'antimycin A; 50 micromolar' vs 'water' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
2 | | CRK7 | '1-naphthylacetic acid and flg22' vs 'none' in 'wild type' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
-2 | | CRK7 | '37 degrees celsius' vs '20 degrees celsius' | compound, temperature | Transcription profiling by array of Arabidopsis after heat shock or treatment with tunicamycin or L-azetidine-2-carboxylic acid |
2 | | CRK7 | 'flg22' vs 'none' in 'wild type' | genotype, treatment | Transcription profiling by array of Arabidopsis expressing miR393 or AFB1 under the control of the 35S promoter after treatment with auxin and/or flg22 |
2 | | CRK7 | 'flg22' vs 'water' at '1 hour' | compound, time | Transcription profiling by array of Arabidopsis after treatment with oligogalacturonides |
1.9 | | CRK7 | 'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.9 | | CRK7 | 'sd1-29' vs 'wild type genotype' in '3-OH-FA; 1 millimolar' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.9 | | CRK7 | 'rlt1-1 rlt2-1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis rlt1-1 rlt2-1 mutants |
1.9 | | CRK7 | 'low light; DBMIB; 24 micromolar; 0.5 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.9 | | CRK7 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
1.9 | | CRK7 | 'edr1 mutant' vs 'wild type' in 'Golovinomyces cichoracearum' at '18 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
-1.9 | | CRK7 | 'c3h14c3h15 double mutant' vs 'wild type' | genotype | Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type |
-1.9 | | CRK7 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
1.8 | | CRK7 | 'ref4-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.8 | | CRK7 | 'wrky33 mutant; Botrytis cinerea 2100' vs 'wild type; Botrytis cinerea 2100' | genotype, infect | WRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation |
1.8 | | CRK7 | 'rbm25-1 mutant' vs 'wild type' in 'abscisic acid; 0.1 millimolar' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1.8 | | CRK7 | 'sodium sulfide; des1' vs 'water; des1' | compound, genotype | Exogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana) |
1.8 | | CRK7 | 'elf18; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.8 | | CRK7 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
1.8 | | CRK7 | 'ANAC017 OEa' vs 'wild type genotype' at '0 day' | genotype, time | Dark-induced senescence time course of ANAC017 mutant lines in Arabidopsis |
-1.8 | | CRK7 | 'LBD37 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
1.8 | | CRK7 | 'Erysiphe orontii' vs 'none' at '72 hour' | infect, time | Transcription profiling by array of Arabidopsis after inoculation with Erysiphe orontii |
1.8 | | CRK7 | 'chitin' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
1.8 | | CRK7 | 'chitin' vs 'none' in 'rre2 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rre1 or rre2 after treatment with chitin |
-1.8 | | CRK7 | '2 hour; excess light' vs '0 hour; low light' in 'hsfa1dhsfa2hsfa3 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.8 | | CRK7 | 'Sclerotinia sclerotiorum' vs 'none' in 'wild type genotype' at '48 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
1.8 | | CRK7 | "rps10 RNAi; early onset of silencing (P2)" vs "none; wild type" | RNA interference, phenotype | Microarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein |
-1.7 | | CRK7 | 'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
-1.7 | | CRK7 | 'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.7 | | CRK7 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.7 | | CRK7 | 'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1.7 | | CRK7 | 'AT4G01050 knock out' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis TROL knock-out plants |
1.7 | | CRK7 | 'Pep1; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.7 | | CRK7 | '96h' vs '48h' | organism part, time | Transcription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light |
1.7 | | CRK7 | '1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '3 hour' | time, treatment | Transcription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening) |
1.7 | | CRK7 | 'flg22' vs 'none' | stimulus | RNA-seq of Arabidopsis thaliana seedlings treated with Flg22 or Pep1 |
1.7 | | CRK7 | 'rao1-1 mutant' vs 'wild type' in 'water' | compound, genotype | Transcription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A |
1.7 | | CRK7 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
-1.6 | | CRK7 | '5 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
-1.6 | | CRK7 | 'cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
1.6 | | CRK7 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
-1.6 | | CRK7 | 'pepr1-1 Pepr2-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
1.6 | | CRK7 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
1.6 | | CRK7 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.6 | | CRK7 | 'arp6-1' vs 'wild type genotype' | genotype | Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq] |
-1.6 | | CRK7 | 'SWP73A overexpression' vs 'wild type genotype' | genotype | Microarray analysis of gene expression level in wild type and SWP73A overexpression Arabidopsis |
1.6 | | CRK7 | 'pmr5 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
1.6 | | CRK7 | 'Rhizoctonia solani AG8' vs 'mock' | infect | Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1 |
1.6 | | CRK7 | 'Pseudomonas syringae DC3000' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
-1.6 | | CRK7 | 'LBD38 overexpression' vs 'wild type' in 'nitrogen depletion' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for or overexpressing LBD37 and LBD38 after nitrogen deprivation |
1.6 | | CRK7 | 'syringolin; 20 micromolar' vs 'none' in 'uninfected' at '8 to 12 hour' | compound, growth condition, time | Transcription profiling of by array of Arabidopsis plants infected with powdery mildew and treated with Syringolin A |
1.6 | | CRK7 | '96h' vs '48h' | organism part, time | Transcription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light |
-1.6 | | CRK7 | 'hda6 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants |
1.6 | | CRK7 | 'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
-1.5 | | CRK7 | '7 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
1.5 | | CRK7 | 'Ler x C24 F1 hybrid' vs 'Landsberg erecta ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.5 | | CRK7 | 'C24 x Ler F1 hybrid' vs 'C24 ecotype' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids |
-1.5 | | CRK7 | 'lyk4/5' vs 'wild type genotype' in 'CO8; 1 millimolar' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.5 | | CRK7 | 'imidazolinone' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis after treatment with imidazolinone |
1.5 | | CRK7 | 'spx1,spx2 double mutant' vs 'wild type' in 'complete medium' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
1.5 | | CRK7 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.5 | | CRK7 | '2,6-dichloroisonicotinic acid' vs 'none' in 'wild type' at '2 day' | compound, genotype, time | Transcription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid |
-1.5 | | CRK7 | 'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '30 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
-1.5 | | CRK7 | 'eds16 mutant; Golovinomyces orontii infection' vs 'wild type; Golovinomyces orontii infection' at 0.25 day | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
1.5 | | CRK7 | 'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a |
-1.4 | | CRK7 | '4 day' vs '0 day' | time | Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development |
1.4 | | CRK7 | 'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wild type' | genotype, infect | Transcription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2 |
1.4 | | CRK7 | 'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.4 | | CRK7 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'upf1-5 mutant' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
1.4 | | CRK7 | 'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.4 | | CRK7 | 'salicylic acid' vs 'control' in 'npr1 sni1 mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for npr1, sni1, ssn2 and/or brca2a after treatment with salicylic acid |
1.4 | | CRK7 | 'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '72 hour' | phenotype, sampling time point | Transcription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls |
1.4 | | CRK7 | 'fdh-3940 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis mutant for bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) against wild-type controls |
1.4 | | CRK7 | 'Pseudomonas syringae DC3000hrpA' vs 'control' in '12 hour' | age, growth condition | Transcription profiling by array of Arabidopsis after inoculation with Pseudomonas syringae |
1.4 | | CRK7 | 'auxin resistant pIAA26::IAA26-P108H-GFP transgenic' vs 'control' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis pIAA26::IAA26-P108H-GFP transgenic plants |
1.4 | | CRK7 | 'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'wild type genotype' | genotype, infect | Transcription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls |
1.4 | | CRK7 | '100 micromolar; fenclorim' vs 'control' at '4 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
1.4 | | CRK7 | 'clf28 mutant' vs 'wild type' in 'silique' | genotype, organism part | Transcription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants |
1.4 | | CRK7 | 'Botrytis cinerea' vs 'none' at '48 hour' | infect, time | Transcription profiling by array of Arabidopsis after infection with Botrytis cinerea |
1.3 | | CRK7 | 'dexamethasone; 15 micromolar' vs 'none' | compound | RNA-seq to investigate Auxin responsive genes in the Arabidopsis stem |
1.3 | | CRK7 | 'ahk2/ahk3/ahk4 triple mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis ahk mutants |
1.3 | | CRK7 | '3-OH-FA; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.3 | | CRK7 | 'indole-3-acetic acid; 1 hour' vs 'indole-3-acetic acid; 0.5 hour' in 'C24' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
-1.3 | | CRK7 | '2 hour; excess light' vs '0 hour; low light' in 'wild type' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.3 | | CRK7 | 'ddm1 mutant' vs 'wild type genotype' | genotype | Gene expression in Arabidopsis ddm1 mutants with high levels of Transposable Element activity |
1.3 | | CRK7 | 'ozone 500 parts per billion' vs 'control' | growth condition | Arabidopsis thaliana response to ozone |
1.3 | | CRK7 | 'ozone 500 parts per billion' vs 'control' | growth condition | Functional Genomics of Ozone Stress in Arabidopsis. |
1.3 | | CRK7 | 'GST-NPP1 1uM' vs 'water' at '1 hour' | growth condition, time | Transcription profiling by array of Arabidopsis after treatment with LPS, HrpZ, Flg-22 and NPP1 |
1.3 | | CRK7 | 'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'wild type' | genotype, infect | Transcription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains |
1.3 | | CRK7 | 'anac090 loss of function mutant' vs 'wild type genotype' | genotype | Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq] |
-1.3 | | CRK7 | 'mbs1-1 mutant' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
-1.3 | | CRK7 | 'water deprivation' vs 'control' in 'pKYL71-35S::InsP5-ptase (line “T8”)' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing mammalian type I inositol polyphosphate 5-phosphatase under the control of the 35S promoter after water deprivation |
-1.2 | | CRK7 | 'hae-3 hsl2-3 mutant' vs 'wild type' | genotype | Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq |
1.2 | | CRK7 | 'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.2 | | CRK7 | 'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day' | genotype, infect | Transcription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000 |
1.2 | | CRK7 | 'swi3d mutant' vs 'wild type genotype' | genotype | Transcript profiling of Arabidopsis thaliana swi3d mutant with inactivated SWI3D subunit of SWI/SNF complex |
-1.2 | | CRK7 | 'excess light; none; 2 hour' vs 'low light; none; 0 hour' | compound, growth condition, time | Transcription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB |
1.2 | | CRK7 | 'mil4 mutant' vs 'wild type' in 'water' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for mil4 and/or sid2 after treatment with benzothiadiazole |
-1.2 | | CRK7 | '2 hour; excess light' vs '0 hour; low light' in 'tnr4 mutant' | genotype, growth condition, time | Transcription profiling by array of Arabidopsis after exposure to excess light |
1.2 | | CRK7 | 'CO8; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute' | compound, genotype, time | RNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course |
1.2 | | CRK7 | 'pmr4-1' vs 'wild type genotype' in 'none' | genotype, infect | Transcription profiling of Arabidopsis callose synthase deficient (pmr4-1) mutant and wild type plants infected with powdery mildew |
-1.2 | | CRK7 | 'eds16 mutant; no infection' vs 'wild type; no infection' at 0 hour | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for eds16 after infection with Golovinomyces orontii |
-1.2 | | CRK7 | 'nudt7-1 sid2-1 eds1-2' vs 'wild type' | genotype | Transcription profiling of EDS1- and SA-dependent genes in Arabidopsis nudt7-1 |
1.2 | | CRK7 | 'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '24 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum |
-1.2 | | CRK7 | 'RNAi-MBS2/mbs1-1 knockdown' vs 'fluorescent (flu) mutant' in 'high light' | genotype, growth condition | Transcription profiling by array of Arabidopsis plants overexpressing or mutant for MBS genes against wild type controls or flu mutants (which produce lots of singlet oxygen when exposed to light) to study NBS as a mediator of singlet oxygen response |
1.1 | | CRK7 | 'abi4-102' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4 |
1.1 | | CRK7 | 'Sphingomonas melonis Fr1 colonization; Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day' | growth condition, infect, sampling time point | Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000 |
-1.1 | | CRK7 | 'ref4-3; cdk8-1' vs 'wild type genotype' | genotype | Gene expression profiling of the Arabidopsis Mediator MED5 mutants ref4-1 and ref4-3, CDK8 mutant cdk8-1 and ref4-3 cdk8-1 |
-1.1 | | CRK7 | 'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'none; ; atpao5-3 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride |
-1.1 | | CRK7 | 'nor1-1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
-1.1 | | CRK7 | 'sub-zero acclimation' vs 'cold acclimation' in 'Te-0' at '72 hour' | ecotype, environmental stress, time | Transcription profiling by array of three Arabidopsis accessions under acclimation to sub-zero temperature at -3 degree Celsius after cold acclimation |
1.1 | | CRK7 | 'Constans mutant' vs 'wild type' | genotype | HAP5 Triple Mutant vs. Constans Mutant |
-1.1 | | CRK7 | 'catalase2 mutant' vs 'wild type' in 'transferred to air for 2 days in long day length regime' | genotype, growth condition | Transcription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod |
-1.1 | | CRK7 | 'Atwrky12-1' vs 'wild type' | genotype | Gene expression profiling of Arabidopsis Atwrky12 mutants stems |
-1.1 | | CRK7 | 'pad2 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326 |
1.1 | | CRK7 | 'edr1 mutant' vs 'wild type' in 'none' at '0 hour' | genotype, infect, time | Transcription profiling by array of Arabidopsis mutant for edr1 after infection with Golovinomyces cichoracearum |
-1.1 | | CRK7 | 'shoot; phosphate starvation 10 days' vs 'shoot; mock' | organism part, treatment | The response and recovery of Arabidopsis thaliana transcriptome to phosphate starvation [ATH1-121501] |
1.1 | | CRK7 | 'Phytophthora infestans' vs 'none' in 'erp2 mutant' at '12 hour' | genotype, infect, time | Metabolic and transcriptional response of Arabidopsis thaliana wildtype and mutants to Phytophtora infestans |
1 | | CRK7 | 'indole-3-acetic acid; 0.5 hour' vs 'no compound; 0 hour' in 'Bay-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1 | | CRK7 | 'indole-3-acetic acid; 3 hour' vs 'indole-3-acetic acid; 1 hour' in 'Col-0' | compound, ecotype, time | Transcription profiling by array of Arabidopsis Col-0, Fei-0, Bur-0, C24, Sha, Bay-0 and Bl-1 after treatment with indole-3-acetic acid |
1 | | CRK7 | 'Laccaria bicolor' vs 'none' | infect | Transcription profiling of Arabidopsis thaliana leaves as reaction to fungi (Laccaria bicolor) infection of the roots |
1 | | CRK7 | 'anac017 loss of function mutant' vs 'wild type genotype' | genotype | Regulatory inversion in NAC networks steers the timing of age-dependent cell death in plants [RNA-Seq] |
1 | | CRK7 | 'pmr6 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for pmr5 and/or pmr6 |
1 | | CRK7 | 'ein2-1; elf18' at '2 hour' vs 'wild type; elf18' at '2 hour' | genotype, time, treatment | Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. |
-1 | | CRK7 | 'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'sodium chloride; 50 millimolar; wild type genotype' | compound, genotype | Transcription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride |
1 | | CRK7 | 'C3H14 overexpressor' vs 'wild type' | genotype | Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type |
1 | | CRK7 | 'fumonisin B1' vs 'control' | growth condition | Transcription profiling by array of Arabidopsis cell cultures after treatment with fumonisin B1 |
-1 | | CRK7 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |