AT4G40090 (AGP3)

arabidopsis thaliana

AGP3

Filter your results

Arabidopsis thaliana
Organism part
Showing 35 experiments:
image/svg+xml leaf root flower fruit
Created with Highcharts 6.2.0adult vascular leafcarpelcauline leafcotyledonflowerflower pedicelfruitfruit septumfruit valvehypocotylleafmixed shoot apical meristem, cotyledon and first leavespetalpetioleplant calluspollenrootroot tiprosette leafseedsepalsiliquestamenstem internodestem node
P
Proteomics
T
Transcriptomics
High
Medium
Low
Below cutoff
No data available

Filter your results

Kingdom
Species
Experiment type
Experimental variables
Regulation
Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
2.3334 × 10-30-10.2
AT4G40090'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.9398 × 10-21-10.2
AT4G40090'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.4143 × 10-29-9.9
AT4G40090'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.7378 × 10-19-7.4
AT4G40090'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
5.6019 × 10-19-7.2
AT4G40090'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
2.6034 × 10-26-6.2
AT4G40090'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
1.7365 × 10-105.2
AT4G40090'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
8.3566 × 10-7-4.4
AT4G40090'salicylic acid' vs 'none' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid
Adjusted p-valueLog2-fold change
8.8444 × 10-4-4.4
AT4G40090'rhd6 WER::GFP' vs 'wild type genotype'genotypeDiversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset
Adjusted p-valueLog2-fold change
9.2793 × 10-10-4
AT4G40090'salicylic acid' vs 'none' in 'sdh1 mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid
Adjusted p-valueLog2-fold change
8.6797 × 10-4-3.5
AT4G40090'5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
9.3177 × 10-4-3.5
AT4G40090'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
6.8713 × 10-83.4
AT4G40090'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
8.4723 × 10-8-3.3
AT4G40090'axr3-1 mutant' vs 'wild type' in 'no compound'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
7.4873 × 10-5-3.3
AT4G40090'0.125 mM gold for 24 hours' vs 'untreated control'growth conditionTranscription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold
Adjusted p-valueLog2-fold change
1.0291 × 10-40-3.2
AT4G40090'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
2.2391 × 10-133.2
AT4G40090'fug1-3 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
6.5928 × 10-16-3.1
AT4G40090'Phytophthora parasitica' vs 'none' in 'wild type genotype'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
2.4095 × 10-7-3.1
AT4G40090'axr3-1 mutant' vs 'wild type' in 'indole-3-acetic acid'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
3.7162 × 10-7-3
AT4G40090'9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
9.4759 × 10-6-3
AT4G40090'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
4.2887 × 10-3-3
AT4G40090'15 hours' vs '12 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
2.6796 × 10-3-2.9
AT4G40090'treated with 2-(2,4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid; 5 micromolar' vs 'control'compoundActivation of auxin signalling counteracts photorespiratory hydrogen peroxide dependent cell death
Adjusted p-valueLog2-fold change
1.3925 × 10-52.8
AT4G40090'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
1.9943 × 10-52.8
AT4G40090'500 micromolar; phosphate' vs 'none' in 'control'compound, growth conditionTranscription profiling by array of Arabidopsis roots grown with different concentrations of phosphate
Adjusted p-valueLog2-fold change
1.0926 × 10-4-2.8
AT4G40090'protoplasting' vs 'control'treatmentTranscription profiling by array of Arabidopsis protoplasted root cells after iron deprivation
Adjusted p-valueLog2-fold change
9.7584 × 10-3-2.7
AT4G40090'4-thiazolidione appended with derivatized acetic acid' vs 'none'growth conditionTranscription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation
Adjusted p-valueLog2-fold change
1.9649 × 10-2-2.7
AT4G40090'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
2.9046 × 10-52.6
AT4G40090'500 micromolar; phosphate' vs 'none' in 'split root'compound, growth conditionTranscription profiling by array of Arabidopsis roots grown with different concentrations of phosphate
Adjusted p-valueLog2-fold change
2.1532 × 10-4-2.6
AT4G40090'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.3507 × 10-2-2.6
AT4G40090'indole-3-acetic acid and 4-thiazolidione appended with derivatized acetic acid' vs 'none'growth conditionTranscription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation
Adjusted p-valueLog2-fold change
1.1941 × 10-6-2.5
AT4G40090'9 hr hypoxia' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
3.5056 × 10-62.5
AT4G40090'sucrose; 1 percent' vs 'none' in 'RBRcs mutant'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.8008 × 10-32.5
AT4G40090'35S::MIF1; dark' vs 'empty pRR2222 vector; dark'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
8.0804 × 10-21-2.4
AT4G40090'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
3.4911 × 10-62.4
AT4G40090'gun1-103 loss of function mutant' vs 'wild type genotype'genotypeFunctional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis
Adjusted p-valueLog2-fold change
1.1163 × 10-22.4
AT4G40090'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
3.8828 × 10-23-2.3
AT4G40090'fbl17-1 (GK_170-E02)' vs 'wild type genotype'genotypeRNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings
Adjusted p-valueLog2-fold change
2.1583 × 10-9-2.3
AT4G40090'gul2-1 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids
Adjusted p-valueLog2-fold change
3.6173 × 10-4-2.3
AT4G40090'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
8.6183 × 10-15-2.2
AT4G40090'lsm4 mutant' vs 'wild type' in 'Columbia ecotype'ecotype, genotypeTranscription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants
Adjusted p-valueLog2-fold change
4.8288 × 10-14-2.2
AT4G40090'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
6.3806 × 10-7-2.2
AT4G40090'1,4-dithiothreitol; 2 millimolar' vs 'none' in 'wild type genotype'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
6.4235 × 10-7-2.2
AT4G40090'dicamba; 7 millimolar' vs 'none'compoundTranscription profiling by array of Arabidopsis after treatment with dicamba
Adjusted p-valueLog2-fold change
9.3104 × 10-6-2.2
AT4G40090'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.0371 × 10-42.2
AT4G40090'iron; 100 micromolar' vs 'none' in 'bhlh100/101 double mutant; root'compound, genotype, organism partExpression data from Arabidopsis roots and shoots grown with or without iron
Adjusted p-valueLog2-fold change
5.8177 × 10-3-2.2
AT4G40090'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
1.5397 × 10-30-2.1
AT4G40090'tunicamycin; 5 microgram per milliliter' vs 'none' in 'ire1b mutant'compound, genotypeExploring the link between ER stress and autophagy in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.1381 × 10-9-2.1
AT4G40090'arr21c overexpressing line' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing arr21c
Adjusted p-valueLog2-fold change
5.357 × 10-5-2.1
AT4G40090'dehydration stress' vs 'control' in 'srk2dei triple mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
2.9881 × 10-4-2.1
AT4G40090'myb36-1 (pSCR::ER:GFP)' vs 'wild type (pSCR::ER:GFP)' in 'root endodermis'genotype, organism partTranscription profiling by high throughput sequencing of the endodermis of Arabidopsis myb36 mutants
Adjusted p-valueLog2-fold change
4.5431 × 10-3-2.1
AT4G40090'12 hours' vs '9 hours'timeCPIB Lateral Root timecourse
Adjusted p-valueLog2-fold change
1.8048 × 10-24-2
AT4G40090'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
5.0873 × 10-132
AT4G40090'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA'fraction, genotype, protocolDirect RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1939 × 10-11-2
AT4G40090'atprmt5 mutant' vs 'wild type genotype'genotypeAtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq
Adjusted p-valueLog2-fold change
2.0478 × 10-5-2
AT4G40090'met1 mutant' vs 'wild type' at '6 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
7.0899 × 10-5-2
AT4G40090'dehydration stress' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
5.0243 × 10-4-2
AT4G40090'spch' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
1.4254 × 10-2-2
AT4G40090'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root epidermis and lateral root cap'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
1.4844 × 10-11-1.9
AT4G40090'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
9.0901 × 10-10-1.9
AT4G40090'arr22-ox' vs 'wild type' in 't-zeatin'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.1915 × 10-5-1.9
AT4G40090'T-DNA knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
2.0241 × 10-5-1.9
AT4G40090's1p -/-; s2p -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
2.4477 × 10-5-1.9
AT4G40090'estradiol; 2 micromolar' vs 'DMSO' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol
Adjusted p-valueLog2-fold change
2.8715 × 10-51.9
AT4G40090'4.5 micromolar Naphtalenacetic acid' vs 'none'treatmentExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Adjusted p-valueLog2-fold change
9.0317 × 10-5-1.9
AT4G40090'csn3-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.3886 × 10-4-1.9
AT4G40090'rhd2 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for rhd2/ArtbohC
Adjusted p-valueLog2-fold change
7.9187 × 10-3-1.9
AT4G40090'SCO3-1 point mutation' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for sco3
Adjusted p-valueLog2-fold change
9.3749 × 10-31.9
AT4G40090'120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
1.8525 × 10-71.8
AT4G40090'nano-ceria; 500 milligram per liter' vs 'water'compoundExpression data from 12-day old Arabidopsis germinants
Adjusted p-valueLog2-fold change
3.2097 × 10-5-1.8
AT4G40090'csn4-1 mutant' vs 'wild type' in 'dark'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.5939 × 10-4-1.8
AT4G40090'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '1 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.9036 × 10-3-1.8
AT4G40090'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '1 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
4.7157 × 10-3-1.8
AT4G40090'tcx2; TMO5:3xGFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
3.8941 × 10-2-1.8
AT4G40090'100 micromolar; fenclorim' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
2.4634 × 10-19-1.7
AT4G40090'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
7.9553 × 10-9-1.7
AT4G40090'tcx2; WOX5:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
4.4383 × 10-3-1.7
AT4G40090'arf2-6 mutant' vs 'wild type' in 'indole-3-acetic acid'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for arf2 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
5.9342 × 10-3-1.7
AT4G40090'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light'genotype, growth conditionTranscription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions
Adjusted p-valueLog2-fold change
1.9071 × 10-2-1.7
AT4G40090'NaCl' vs 'control' in 'columella root cap cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
3.9584 × 10-19-1.6
AT4G40090'tunicamycin; 5 microgram per milliliter' vs 'none' in 'ire1a; ire1b double mutant'compound, genotypeExploring the link between ER stress and autophagy in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.5713 × 10-11-1.6
AT4G40090'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
9.0662 × 10-101.6
AT4G40090'prmt5 mutant' vs 'wild type'genotypeGenome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes
Adjusted p-valueLog2-fold change
2.3782 × 10-81.6
AT4G40090'gsnor1' vs 'wild type genotype' in 'Phytophthora parasitica'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
2.0438 × 10-6-1.6
AT4G40090'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'indole-3-butyric acid; 10 micromolar; wild type'compound, genotypeExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
Adjusted p-valueLog2-fold change
1.0264 × 10-5-1.6
AT4G40090'tcx2; CYCD6:GFP' vs 'wild type genotype'genotypeTranscriptional profile of TCX2 mutant
Adjusted p-valueLog2-fold change
1.1369 × 10-51.6
AT4G40090'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
1.6493 × 10-5-1.6
AT4G40090'hypoxia' vs 'normoxia' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions
Adjusted p-valueLog2-fold change
2.7858 × 10-5-1.6
AT4G40090'cys-c1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for cys-c1
Adjusted p-valueLog2-fold change
1.3009 × 10-4-1.6
AT4G40090'arf2-6 mutant' vs 'wild type' in 'indole-3-acetic acid'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid
Adjusted p-valueLog2-fold change
3.9364 × 10-4-1.6
AT4G40090'pkl mutant; uniconazole' vs 'pkl mutant; no compound'compound, genotypeTranscription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole
Adjusted p-valueLog2-fold change
2.7886 × 10-3-1.6
AT4G40090'met1 mutant' vs 'wild type' at '4 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
1.3313 × 10-2-1.6
AT4G40090'AtRsgA-i homozygous knockout' vs 'wild type genotype'genotypeRNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
Adjusted p-valueLog2-fold change
3.0036 × 10-21.6
AT4G40090'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius'genotype, temperaturePFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis
Adjusted p-valueLog2-fold change
1.6547 × 10-23-1.5
AT4G40090'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
4.9306 × 10-91.5
AT4G40090'prmt4a;4b double mutant' vs 'wild type'genotypeGenome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes
Adjusted p-valueLog2-fold change
6.3497 × 10-7-1.5
AT4G40090'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
3.496 × 10-5-1.5
AT4G40090'50 micromolar antimycin A' vs 'none'treatmentExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Adjusted p-valueLog2-fold change
4.3967 × 10-5-1.5
AT4G40090'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.4197 × 10-4-1.5
AT4G40090'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
1.983 × 10-4-1.5
AT4G40090'DCC1 mutant' vs 'wild type genotype'genotypeThioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
Adjusted p-valueLog2-fold change
8.2403 × 10-3-1.5
AT4G40090'tor mutant' vs 'wild type' in 'glucose; 15 micromolar'compound, genotypeTranscription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose
Adjusted p-valueLog2-fold change
3.5289 × 10-2-1.5
AT4G40090'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root stele'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
2.349 × 10-111.4
AT4G40090'drought environment' vs 'none' in 'ahl10-1'environmental stress, genotypeTranscriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment)
Adjusted p-valueLog2-fold change
3.8619 × 10-51.4
AT4G40090'se-2; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
4.025 × 10-5-1.4
AT4G40090'2 hr hypoxia' vs '2 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
8.8529 × 10-5-1.4
AT4G40090'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.1077 × 10-4-1.4
AT4G40090'estradiol; 2 micromolar' vs 'DMSO' at '12 hour'compound, timeTranscription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol
Adjusted p-valueLog2-fold change
1.9221 × 10-3-1.4
AT4G40090'ref8-1 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants
Adjusted p-valueLog2-fold change
5.3385 × 10-3-1.4
AT4G40090'act2-3' vs 'wild type genotype' in 'ground'genotype, growth conditionTranscription profiling by array of etiolated Arabidopsis thaliana seedlings in response to microgravity
Adjusted p-valueLog2-fold change
9.2223 × 10-31.4
AT4G40090'arf7 arf19 double mutant' vs 'wild type' in 'Root Lateral Root Emergence Zone'genotype, organism partTranscription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19
Adjusted p-valueLog2-fold change
9.7306 × 10-31.4
AT4G40090'low water potential stress' vs 'control' in 'wild type'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
4.7177 × 10-2-1.4
AT4G40090'2,4,6-trinitrotoluene 60 micromolar' vs 'none'compound, doseTranscription profiling by array of Arabidopsis treated with 2,4,6-trinitrotoluene (TNT)
Adjusted p-valueLog2-fold change
1.0865 × 10-24-1.3
AT4G40090'wounding; 3 hour' vs 'none; 0 hour' in 'DMSO'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
4.6448 × 10-5-1.3
AT4G40090'wounding; 3 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
5.7214 × 10-51.3
AT4G40090'se-2 loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
1.8637 × 10-4-1.3
AT4G40090'atphb3 anac017' vs 'wild type'age, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins
Adjusted p-valueLog2-fold change
2.9146 × 10-4-1.3
AT4G40090'RNAi knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
3.1985 × 10-4-1.3
AT4G40090'RNAi knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
3.2907 × 10-4-1.3
AT4G40090'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.4 mutant'compound, genotypeRNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment.
Adjusted p-valueLog2-fold change
3.9952 × 10-4-1.3
AT4G40090'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant'compound, genotypeRNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment.
Adjusted p-valueLog2-fold change
4.7831 × 10-4-1.3
AT4G40090'hypoxia' vs 'normoxia' in 'HRE1-RNAi20'genotype, growth conditionTranscription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions
Adjusted p-valueLog2-fold change
1.5703 × 10-31.3
AT4G40090'iron; 100 micromolar' vs 'none' in 'wild type; root'compound, genotype, organism partExpression data from Arabidopsis roots and shoots grown with or without iron
Adjusted p-valueLog2-fold change
2.0621 × 10-31.3
AT4G40090'strigolactone GR24; 10 micromolar' vs 'DMSO' in 'hy1-102 mutant'compound, genotypeTranscription profiling by array of Arabidopsis hy1 mutants treated with the germination stimulant GR24
Adjusted p-valueLog2-fold change
2.9531 × 10-3-1.3
AT4G40090'sodium nitroprusside' vs 'none'compoundExpression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO
Adjusted p-valueLog2-fold change
6.4568 × 10-3-1.3
AT4G40090'srk2dei triple mutant' vs 'wild type' in 'dehydration stress'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
1.4984 × 10-2-1.3
AT4G40090'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '0 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
2.7654 × 10-2-1.3
AT4G40090'vte1 mutant' vs 'wild type' in '1 day'age, genotypeTranscription profiling by array of Arabidopsis mutant for vte1 or vte2
Adjusted p-valueLog2-fold change
4.4731 × 10-21.3
AT4G40090'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark'genotype, lightTranscription profiling by array of Arabidopsis early seedling development
Adjusted p-valueLog2-fold change
3.4022 × 10-13-1.2
AT4G40090'wounding' at '3 hour' vs 'none' at '0 hour'injury, timeTranscriptional response to wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
8.7199 × 10-9-1.2
AT4G40090'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
3.1007 × 10-61.2
AT4G40090'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium and resupplied with Pi for 4 h'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
5.9975 × 10-6-1.2
AT4G40090'50 micromolar abscisic acid' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
8.3913 × 10-6-1.2
AT4G40090'ga1 muant and SCL3 overexpression' vs 'ga1 mutant'genotypeArabidopsis thaliana roots at 7DAG; ga1, ga1 scl3 (LOF) and ga1 SCL3 OE (GOF)
Adjusted p-valueLog2-fold change
1.2312 × 10-51.2
AT4G40090'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.8963 × 10-51.2
AT4G40090'ahk2ahk3' vs 'wild type' in '23 degree celsius'genotype, temperatureTranscription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
8.6263 × 10-51.2
AT4G40090'wild type; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'wild type; UV-B light regimen (305 nm); control'genotype, light, time, treatmentTranscription profiling of Arabodpsis seedings exposed to UV-B irradiation
Adjusted p-valueLog2-fold change
9.7346 × 10-5-1.2
AT4G40090'arr22-ox' vs 'wild type' in 'none'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
2.4864 × 10-4-1.2
AT4G40090'cdkf,1-2 T-DNA insertion mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis cdkf;1-2 mutant
Adjusted p-valueLog2-fold change
3.2475 × 10-41.2
AT4G40090'phosphate-lacking medium' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
5.2592 × 10-4-1.2
AT4G40090'Rhizoctonia solani AG8' vs 'mock'infectExpression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
Adjusted p-valueLog2-fold change
2.5186 × 10-3-1.2
AT4G40090'RBRcs mutant' vs 'wild type' in 'none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
2.8224 × 10-3-1.2
AT4G40090'azetidine-2-carboxylic acid; 5 millimolar' vs 'none' in 'wild type genotype'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
2.8991 × 10-3-1.2
AT4G40090'srk2dei triple mutant' vs 'wild type' in 'control'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
9.0001 × 10-3-1.2
AT4G40090'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
1.8133 × 10-2-1.2
AT4G40090'T-DNA knock out line 2' vs 'wild type' in 'Col-0'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
1.9064 × 10-2-1.2
AT4G40090'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '120 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
2.9189 × 10-21.2
AT4G40090'agl15-4; agl18-1 double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis
Adjusted p-valueLog2-fold change
3.57 × 10-21.2
AT4G40090'arf7 arf19 double mutant' vs 'wild type' in 'Root Decelerating Elongation Zone'genotype, organism partTranscription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19
Adjusted p-valueLog2-fold change
4.5282 × 10-2-1.2
AT4G40090'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
1.0585 × 10-131.1
AT4G40090'atnusg mutant' vs 'wild type genotype'genotypeRNA-sequence to compare the transcriptional profiles of nuclear and plastidic genes in the atnusg and the wild-type
Adjusted p-valueLog2-fold change
9.3617 × 10-9-1.1
AT4G40090'tunicamycin; 5 microgram per milliliter' vs 'none' in 'wild type genotype'compound, genotypeExploring the link between ER stress and autophagy in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
5.4561 × 10-6-1.1
AT4G40090'wounding; 6 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
1.7701 × 10-5-1.1
AT4G40090'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none'stimulusTranscription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes
Adjusted p-valueLog2-fold change
3.178 × 10-5-1.1
AT4G40090'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
5.2183 × 10-5-1.1
AT4G40090'bleomycin' vs 'none'stimulusTranscription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes
Adjusted p-valueLog2-fold change
2.0601 × 10-4-1.1
AT4G40090'abscisic acid; 50 micromolar' vs 'mock' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
2.8052 × 10-31.1
AT4G40090'ahk2ahk3' vs 'wild type' in '1 degree celsius'genotype, temperatureTranscription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
6.2032 × 10-3-1.1
AT4G40090'estradiol; 2 micromolar' vs 'DMSO' at '6 hour'compound, timeTranscription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol
Adjusted p-valueLog2-fold change
6.6228 × 10-31.1
AT4G40090'phosphate deprivation' vs 'control' in 'wild type genotype; root'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
7.0578 × 10-3-1.1
AT4G40090'crab shell chitin' vs 'water'compoundTranscription profiling by array of Arabidopsis after treatment with crab shell chitin or chitin octamer
Adjusted p-valueLog2-fold change
7.7097 × 10-3-1.1
AT4G40090'bhlh100/101 double mutant' vs 'wild type' in 'none; root'compound, genotype, organism partExpression data from Arabidopsis roots and shoots grown with or without iron
Adjusted p-valueLog2-fold change
4.9858 × 10-21.1
AT4G40090'uvr-8; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'uvr-8; UV-B light regimen (305 nm); control'genotype, light, time, treatmentTranscription profiling of Arabodpsis seedings exposed to UV-B irradiation
Adjusted p-valueLog2-fold change
5.3655 × 10-191
AT4G40090'limited phosphate treatment' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis roots upon exposure of phosphate starvation
Adjusted p-valueLog2-fold change
7.0424 × 10-9-1
AT4G40090'wounding' at '1 hour' vs 'none' at '0 hour'injury, timeTranscriptional response to wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
3.8967 × 10-8-1
AT4G40090'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
1.0219 × 10-6-1
AT4G40090'rlk1 mutant' vs 'wild type' in 'water'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for rlk1 after treatment with chitooctaose
Adjusted p-valueLog2-fold change
9.2634 × 10-6-1
AT4G40090'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.087 × 10-5-1
AT4G40090'35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar'compound, genotypeMicroarray designed to find PIN polarity regulators downstream of TIR1/AFB
Adjusted p-valueLog2-fold change
9.6192 × 10-51
AT4G40090'gun4-1 mutant' vs 'wild type' in 'no compound'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin
Adjusted p-valueLog2-fold change
2.9286 × 10-4-1
AT4G40090'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '30 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
3.0973 × 10-41
AT4G40090'top3A-2' vs 'wild type genotype'genotypeTranscriptome analysis of top3A-2 complementation lines in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.4015 × 10-4-1
AT4G40090'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'DMSO; ibr1ibr3ibr10'compound, genotypeExpression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA)
Adjusted p-valueLog2-fold change
4.1304 × 10-4-1
AT4G40090'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '0 minute'block, genotype, timeExpression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings
Adjusted p-valueLog2-fold change
5.148 × 10-4-1
AT4G40090'tunicamycin; 5 microgram per milliliter' vs 'none' in 'bzip17 -/- ; bzip28 -/-'compound, genotypemRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
Adjusted p-valueLog2-fold change
5.1993 × 10-41
AT4G40090'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
8.1323 × 10-41
AT4G40090'fip37-4 LEC1:FIP37' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings
Adjusted p-valueLog2-fold change
1.8705 × 10-3-1
AT4G40090'MKK9DD mutant' vs 'wild type' in 'none; control'compound, genotype, growth conditionTranscription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes
Adjusted p-valueLog2-fold change
3.6773 × 10-31
AT4G40090'cbp80; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
8.1496 × 10-31
AT4G40090'sucrose; 1 percent' vs 'none' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose
Adjusted p-valueLog2-fold change
1.0628 × 10-2-1
AT4G40090'100 micromolar ATP' vs 'control' in 'wild type'genotype, growth conditionATP effect on Arabidopsis roots
Adjusted p-valueLog2-fold change
1.1322 × 10-21
AT4G40090'overexpressing ERF115' vs 'wild-type'genotypeTranscription profiling by array of root tips from Arabidopsis overexpressing ERF115, with mutated erf115 and wild-type controls
Adjusted p-valueLog2-fold change
3.168 × 10-2-1
AT4G40090'nutrient solution without potassium; root' vs 'control; root'growth condition, organism partTranscription profiling by array of Arabidopsis after potassium starvation or treatment with caesium
Synonym
T5J17.1, At4g40090
Gene ontology
Plant ontology
Ensembl gene
Ensembl transcript
Ensembl protein
Entrez
UniProt
Gene biotype
Design element
252833_at