-10.2 | | AT4G40090 | 'drought environment' vs 'normal watering' in 'vtc2.5 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-10.2 | | AT4G40090 | 'drought environment' vs 'normal watering' in 'vtc2 mutant' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-9.9 | | AT4G40090 | 'drought environment' vs 'normal watering' in 'wild type genotype' | environmental stress, genotype | Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana |
-7.4 | | AT4G40090 | '42 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-7.2 | | AT4G40090 | '57 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
-6.2 | | AT4G40090 | '35 day' vs '29 day' | age | RNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence |
5.2 | | AT4G40090 | 'seed germinating in continuous light 48 h SL' vs 'seed germinating in continuous light 24 h SL' | growth condition | Transcription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination |
-4.4 | | AT4G40090 | 'salicylic acid' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-4.4 | | AT4G40090 | 'rhd6 WER::GFP' vs 'wild type genotype' | genotype | Diversification of Root Hair Development Genes in Vascular Plants - arabidopsis thaliana dataset |
-4 | | AT4G40090 | 'salicylic acid' vs 'none' in 'sdh1 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid |
-3.5 | | AT4G40090 | '5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for ddm1 |
-3.5 | | AT4G40090 | '480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
3.4 | | AT4G40090 | 'gun1-103; fug1-3 double loss of function mutant' vs 'wild type genotype' | genotype | Functional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis |
-3.3 | | AT4G40090 | 'axr3-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-3.3 | | AT4G40090 | '0.125 mM gold for 24 hours' vs 'untreated control' | growth condition | Transcription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold |
-3.2 | | AT4G40090 | 'epcr1-/-; epcr2-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
3.2 | | AT4G40090 | 'fug1-3 loss of function mutant' vs 'wild type genotype' | genotype | Functional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis |
-3.1 | | AT4G40090 | 'Phytophthora parasitica' vs 'none' in 'wild type genotype' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-3.1 | | AT4G40090 | 'axr3-1 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-3 | | AT4G40090 | '9 hr hypoxia + 1hr recovery' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-3 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-3 | | AT4G40090 | '15 hours' vs '12 hours' | time | CPIB Lateral Root timecourse |
-2.9 | | AT4G40090 | 'treated with 2-(2,4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid; 5 micromolar' vs 'control' | compound | Activation of auxin signalling counteracts photorespiratory hydrogen peroxide dependent cell death |
2.8 | | AT4G40090 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'spx1,spx2 double mutant' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
2.8 | | AT4G40090 | '500 micromolar; phosphate' vs 'none' in 'control' | compound, growth condition | Transcription profiling by array of Arabidopsis roots grown with different concentrations of phosphate |
-2.8 | | AT4G40090 | 'protoplasting' vs 'control' | treatment | Transcription profiling by array of Arabidopsis protoplasted root cells after iron deprivation |
-2.7 | | AT4G40090 | '4-thiazolidione appended with derivatized acetic acid' vs 'none' | growth condition | Transcription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation |
-2.7 | | AT4G40090 | 'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
2.6 | | AT4G40090 | '500 micromolar; phosphate' vs 'none' in 'split root' | compound, growth condition | Transcription profiling by array of Arabidopsis roots grown with different concentrations of phosphate |
-2.6 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-2.6 | | AT4G40090 | 'indole-3-acetic acid and 4-thiazolidione appended with derivatized acetic acid' vs 'none' | growth condition | Transcription profiling by array of Arabidopsis after treatment with inhibitors of auxin transcriptional activation |
-2.5 | | AT4G40090 | '9 hr hypoxia' vs '9 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
2.5 | | AT4G40090 | 'sucrose; 1 percent' vs 'none' in 'RBRcs mutant' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
2.5 | | AT4G40090 | '35S::MIF1; dark' vs 'empty pRR2222 vector; dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-2.4 | | AT4G40090 | 'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
2.4 | | AT4G40090 | 'gun1-103 loss of function mutant' vs 'wild type genotype' | genotype | Functional relationship of Arabidopsis thaliana GUN1 and FUG1 in plastid proteostasis |
2.4 | | AT4G40090 | 'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid' | ecotype, genotype | RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL) |
-2.3 | | AT4G40090 | 'fbl17-1 (GK_170-E02)' vs 'wild type genotype' | genotype | RNAseq analysis of Arabidopsis Col-0 wild-type and fbl17 mutant seedlings |
-2.3 | | AT4G40090 | 'gul2-1 mutant' vs 'wild type genotype' | genotype | Transcription profiling by array of Arabidopsis wild type, brassinosteroid insensitive1 mutant (bri1-5), long-hypocotyl mutant phytochrome B (gul2-1/phyB-77), and bri1-5 gul2-1 double mutant to study gene expression controlled by light and brassinosteroids |
-2.3 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-2.2 | | AT4G40090 | 'lsm4 mutant' vs 'wild type' in 'Columbia ecotype' | ecotype, genotype | Transcription profiling by high throughput sequencing of Arabidopsis lsm4-1 mutants and sad1/lsm5 double mutants |
-2.2 | | AT4G40090 | 'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-2.2 | | AT4G40090 | '1,4-dithiothreitol; 2 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
-2.2 | | AT4G40090 | 'dicamba; 7 millimolar' vs 'none' | compound | Transcription profiling by array of Arabidopsis after treatment with dicamba |
-2.2 | | AT4G40090 | 'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
2.2 | | AT4G40090 | 'iron; 100 micromolar' vs 'none' in 'bhlh100/101 double mutant; root' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
-2.2 | | AT4G40090 | '100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-2.1 | | AT4G40090 | 'tunicamycin; 5 microgram per milliliter' vs 'none' in 'ire1b mutant' | compound, genotype | Exploring the link between ER stress and autophagy in Arabidopsis thaliana |
-2.1 | | AT4G40090 | 'arr21c overexpressing line' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis overexpressing arr21c |
-2.1 | | AT4G40090 | 'dehydration stress' vs 'control' in 'srk2dei triple mutant' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-2.1 | | AT4G40090 | 'myb36-1 (pSCR::ER:GFP)' vs 'wild type (pSCR::ER:GFP)' in 'root endodermis' | genotype, organism part | Transcription profiling by high throughput sequencing of the endodermis of Arabidopsis myb36 mutants |
-2.1 | | AT4G40090 | '12 hours' vs '9 hours' | time | CPIB Lateral Root timecourse |
-2 | | AT4G40090 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
2 | | AT4G40090 | 'xrn3-8 mutant' vs 'wild type genotype' in 'total RNA depleted for ribosomal RNA' | fraction, genotype, protocol | Direct RNA Sequencing of polyadenylated RNA & high-depth Illumina strand-specific, short read RNA-seq of a stably RNAi-silenced nuclear 5'-3' exonuclease XRN3 mutant line in Arabidopsis thaliana |
-2 | | AT4G40090 | 'atprmt5 mutant' vs 'wild type genotype' | genotype | AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq |
-2 | | AT4G40090 | 'met1 mutant' vs 'wild type' at '6 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-2 | | AT4G40090 | 'dehydration stress' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-2 | | AT4G40090 | 'spch' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings |
-2 | | AT4G40090 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root epidermis and lateral root cap' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
-1.9 | | AT4G40090 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.9 | | AT4G40090 | 'arr22-ox' vs 'wild type' in 't-zeatin' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-1.9 | | AT4G40090 | 'T-DNA knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1.9 | | AT4G40090 | 's1p -/-; s2p -/-' vs 'wild type genotype' in 'tunicamycin; 5 microgram per milliliter' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
-1.9 | | AT4G40090 | 'estradiol; 2 micromolar' vs 'DMSO' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
1.9 | | AT4G40090 | '4.5 micromolar Naphtalenacetic acid' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-1.9 | | AT4G40090 | 'csn3-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.9 | | AT4G40090 | 'rhd2 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for rhd2/ArtbohC |
-1.9 | | AT4G40090 | 'SCO3-1 point mutation' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for sco3 |
1.9 | | AT4G40090 | '120 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone' | compound, genotype, organism part, time | Transcription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin |
1.8 | | AT4G40090 | 'nano-ceria; 500 milligram per liter' vs 'water' | compound | Expression data from 12-day old Arabidopsis germinants |
-1.8 | | AT4G40090 | 'csn4-1 mutant' vs 'wild type' in 'dark' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.8 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.8 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '1 hour' | compound, genotype, time | Transcription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout |
-1.8 | | AT4G40090 | 'tcx2; TMO5:3xGFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.8 | | AT4G40090 | '100 micromolar; fenclorim' vs 'control' at '24 hour' | compound, time | Transcription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine |
-1.7 | | AT4G40090 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.7 | | AT4G40090 | 'tcx2; WOX5:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
-1.7 | | AT4G40090 | 'arf2-6 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf2 after treatment with indole-3-acetic acid |
-1.7 | | AT4G40090 | 'empty pRR2222 vector; dark' vs 'empty pRR2222 vector; light' | genotype, growth condition | Transcription profiling by array of Arabidopsis expressing MIF1 under the control of the 35S promoter after growth in light or dark conditions |
-1.7 | | AT4G40090 | 'NaCl' vs 'control' in 'columella root cap cells' | cell type, growth condition | Transcription profiling by array of Arabidopsis root cells after treatment with NaCl |
-1.6 | | AT4G40090 | 'tunicamycin; 5 microgram per milliliter' vs 'none' in 'ire1a; ire1b double mutant' | compound, genotype | Exploring the link between ER stress and autophagy in Arabidopsis thaliana |
-1.6 | | AT4G40090 | 'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1.6 | | AT4G40090 | 'prmt5 mutant' vs 'wild type' | genotype | Genome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes |
1.6 | | AT4G40090 | 'gsnor1' vs 'wild type genotype' in 'Phytophthora parasitica' | genotype, infect | RNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls |
-1.6 | | AT4G40090 | 'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'indole-3-butyric acid; 10 micromolar; wild type' | compound, genotype | Expression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA) |
-1.6 | | AT4G40090 | 'tcx2; CYCD6:GFP' vs 'wild type genotype' | genotype | Transcriptional profile of TCX2 mutant |
1.6 | | AT4G40090 | 'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
-1.6 | | AT4G40090 | 'hypoxia' vs 'normoxia' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
-1.6 | | AT4G40090 | 'cys-c1 mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for cys-c1 |
-1.6 | | AT4G40090 | 'arf2-6 mutant' vs 'wild type' in 'indole-3-acetic acid' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for arf19, arf2, axr3, iaa5, iaa6, iaa19, iaa17 or nph4 after treatment with indole-3-acetic acid |
-1.6 | | AT4G40090 | 'pkl mutant; uniconazole' vs 'pkl mutant; no compound' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for pickle after treatment with uniconazole |
-1.6 | | AT4G40090 | 'met1 mutant' vs 'wild type' at '4 hour' | genotype, time | Transcription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours |
-1.6 | | AT4G40090 | 'AtRsgA-i homozygous knockout' vs 'wild type genotype' | genotype | RNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout |
1.6 | | AT4G40090 | 'pft1-1; 16 degree celsius' vs 'pft1-1; 23 degree celsius' | genotype, temperature | PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis |
-1.5 | | AT4G40090 | 'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen' | genotype, growth condition | Transcription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours |
1.5 | | AT4G40090 | 'prmt4a;4b double mutant' vs 'wild type' | genotype | Genome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes |
-1.5 | | AT4G40090 | 'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
-1.5 | | AT4G40090 | '50 micromolar antimycin A' vs 'none' | treatment | Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue |
-1.5 | | AT4G40090 | 'paclobutrazol; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-1.5 | | AT4G40090 | 'arid2-/-; arid3-/-; arid4-/-' vs 'wild type genotype' | genotype | The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
-1.5 | | AT4G40090 | 'DCC1 mutant' vs 'wild type genotype' | genotype | Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis |
-1.5 | | AT4G40090 | 'tor mutant' vs 'wild type' in 'glucose; 15 micromolar' | compound, genotype | Transcription profiling by array of Arabidopsis estradiol inducible RNAi-tor seedlings treated with glucose |
-1.5 | | AT4G40090 | 'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root stele' | growth condition, organism part | Transcription profiling by array of Arabidopsis root cells after growth in low pH conditions |
1.4 | | AT4G40090 | 'drought environment' vs 'none' in 'ahl10-1' | environmental stress, genotype | Transcriptome analysis using RNA sequencing conducted for Arabidopsis thaliana Col-0 wild type and ahl10-1 mutant in response to low water potential (drought environment) |
1.4 | | AT4G40090 | 'se-2; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
-1.4 | | AT4G40090 | '2 hr hypoxia' vs '2 hr control' in 'total mRNA' | RNA, growth condition | Transcription profiling by array of Arabidopsis after short and prolonged hypoxia treatment |
-1.4 | | AT4G40090 | 'abscisic acid; 20 micromolar' vs 'none' in 'embryo' | compound, organism part | Transcription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol |
-1.4 | | AT4G40090 | 'estradiol; 2 micromolar' vs 'DMSO' at '12 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
-1.4 | | AT4G40090 | 'ref8-1 mutant' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants |
-1.4 | | AT4G40090 | 'act2-3' vs 'wild type genotype' in 'ground' | genotype, growth condition | Transcription profiling by array of etiolated Arabidopsis thaliana seedlings in response to microgravity |
1.4 | | AT4G40090 | 'arf7 arf19 double mutant' vs 'wild type' in 'Root Lateral Root Emergence Zone' | genotype, organism part | Transcription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19 |
1.4 | | AT4G40090 | 'low water potential stress' vs 'control' in 'wild type' | genotype, growth condition | Comparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant |
-1.4 | | AT4G40090 | '2,4,6-trinitrotoluene 60 micromolar' vs 'none' | compound, dose | Transcription profiling by array of Arabidopsis treated with 2,4,6-trinitrotoluene (TNT) |
-1.3 | | AT4G40090 | 'wounding; 3 hour' vs 'none; 0 hour' in 'DMSO' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.3 | | AT4G40090 | 'wounding; 3 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
1.3 | | AT4G40090 | 'se-2 loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
-1.3 | | AT4G40090 | 'atphb3 anac017' vs 'wild type' | age, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants that are defective in mitochondrial proteins |
-1.3 | | AT4G40090 | 'RNAi knock out line 2' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1.3 | | AT4G40090 | 'RNAi knock out line 1' vs 'wild type' in 'Nd-1' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1.3 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.4 mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
-1.3 | | AT4G40090 | 'sodium chloride; 150 millimolar' vs 'none' in 'snrk2.1/2.4/2.5/2.9/2.10 quintuple mutant' | compound, genotype | RNA-seq of Arabidopsis Col-0, snrk2.4, double snrk2.4/2.10 and quintuple snrk2.1/2.4/2.5/2.9/2.10 mutants from control (0mM) and salt stress (150mM NaCl for 1hour) treatment. |
-1.3 | | AT4G40090 | 'hypoxia' vs 'normoxia' in 'HRE1-RNAi20' | genotype, growth condition | Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions |
1.3 | | AT4G40090 | 'iron; 100 micromolar' vs 'none' in 'wild type; root' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
1.3 | | AT4G40090 | 'strigolactone GR24; 10 micromolar' vs 'DMSO' in 'hy1-102 mutant' | compound, genotype | Transcription profiling by array of Arabidopsis hy1 mutants treated with the germination stimulant GR24 |
-1.3 | | AT4G40090 | 'sodium nitroprusside' vs 'none' | compound | Expression data from Arabidopsis thaliana treated with NO donor SNP, compared to NO depletion by cPTIO |
-1.3 | | AT4G40090 | 'srk2dei triple mutant' vs 'wild type' in 'dehydration stress' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.3 | | AT4G40090 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1.3 | | AT4G40090 | 'vte1 mutant' vs 'wild type' in '1 day' | age, genotype | Transcription profiling by array of Arabidopsis mutant for vte1 or vte2 |
1.3 | | AT4G40090 | 'wild type; red-light and long-day (0.5 μmole m-2 sec-1)' vs 'wild type; dark' | genotype, light | Transcription profiling by array of Arabidopsis early seedling development |
-1.2 | | AT4G40090 | 'wounding' at '3 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-1.2 | | AT4G40090 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
1.2 | | AT4G40090 | 'spx1,spx2 double mutant' vs 'wild type' in 'phosphate-lacking medium and resupplied with Pi for 4 h' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
-1.2 | | AT4G40090 | '50 micromolar abscisic acid' vs 'control' in 'wild type' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.2 | | AT4G40090 | 'ga1 muant and SCL3 overexpression' vs 'ga1 mutant' | genotype | Arabidopsis thaliana roots at 7DAG; ga1, ga1 scl3 (LOF) and ga1 SCL3 OE (GOF) |
1.2 | | AT4G40090 | 'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type' | RNA, genotype | Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
1.2 | | AT4G40090 | 'ahk2ahk3' vs 'wild type' in '23 degree celsius' | genotype, temperature | Transcription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana |
1.2 | | AT4G40090 | 'wild type; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'wild type; UV-B light regimen (305 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
-1.2 | | AT4G40090 | 'arr22-ox' vs 'wild type' in 'none' | genotype, growth condition | Transcription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin |
-1.2 | | AT4G40090 | 'cdkf,1-2 T-DNA insertion mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis cdkf;1-2 mutant |
1.2 | | AT4G40090 | 'phosphate-lacking medium' vs 'complete medium' in 'wild type' | genotype, growth condition | Expression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate |
-1.2 | | AT4G40090 | 'Rhizoctonia solani AG8' vs 'mock' | infect | Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1 |
-1.2 | | AT4G40090 | 'RBRcs mutant' vs 'wild type' in 'none' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-1.2 | | AT4G40090 | 'azetidine-2-carboxylic acid; 5 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
-1.2 | | AT4G40090 | 'srk2dei triple mutant' vs 'wild type' in 'control' | genotype, growth condition | Transcription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3 |
-1.2 | | AT4G40090 | 'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness' | developmental stage, genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light |
-1.2 | | AT4G40090 | 'T-DNA knock out line 2' vs 'wild type' in 'Col-0' | ecotype, genotype | Transcription profiling by array of Arabidopsis mutant for At2g19270 |
-1.2 | | AT4G40090 | 'trasngenic REVOLUTA fused to GR domain' vs 'wild type genotype' in 'Collection day one' at '120 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1.2 | | AT4G40090 | 'agl15-4; agl18-1 double mutant' vs 'wild type' | genotype | Transcription profiling by array of Arabidopsis mutant for agl15 and agl18 or overexpressing AGL15 during somatic embryogenesis |
1.2 | | AT4G40090 | 'arf7 arf19 double mutant' vs 'wild type' in 'Root Decelerating Elongation Zone' | genotype, organism part | Transcription profiling by array of different organism parts of Arabidopsis mutant for arf7 and arf19 |
-1.2 | | AT4G40090 | 'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype' | compound, genotype | Salicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants. |
1.1 | | AT4G40090 | 'atnusg mutant' vs 'wild type genotype' | genotype | RNA-sequence to compare the transcriptional profiles of nuclear and plastidic genes in the atnusg and the wild-type |
-1.1 | | AT4G40090 | 'tunicamycin; 5 microgram per milliliter' vs 'none' in 'wild type genotype' | compound, genotype | Exploring the link between ER stress and autophagy in Arabidopsis thaliana |
-1.1 | | AT4G40090 | 'wounding; 6 hour' vs 'none; 0 hour' in 'gamma-butyrolactone; 25 micromolar' | compound, injury, time | The effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots |
-1.1 | | AT4G40090 | 'bleomycin and 2, 6-dichloroisonicotinic acid' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
-1.1 | | AT4G40090 | 'csn3-1 mutant' vs 'wild type' in 'light' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions |
-1.1 | | AT4G40090 | 'bleomycin' vs 'none' | stimulus | Transcription profiling by array of Arabidopsis seedlings grown after DNA-damaging agent bleomycin (BLM) and/or immune inducer 2, 6-dichloroisonicotinic acid (INA) treatment to identify synergistically induced defence genes |
-1.1 | | AT4G40090 | 'abscisic acid; 50 micromolar' vs 'mock' in 'wild type' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA |
1.1 | | AT4G40090 | 'ahk2ahk3' vs 'wild type' in '1 degree celsius' | genotype, temperature | Transcription profiling by array of genes regulated by ahk2 ahk3 in response to cold in Arabidopsis thaliana |
-1.1 | | AT4G40090 | 'estradiol; 2 micromolar' vs 'DMSO' at '6 hour' | compound, time | Transcription profiling by array of Arabidopsis expressing DUO1 as a result of induction with estradiol |
1.1 | | AT4G40090 | 'phosphate deprivation' vs 'control' in 'wild type genotype; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
-1.1 | | AT4G40090 | 'crab shell chitin' vs 'water' | compound | Transcription profiling by array of Arabidopsis after treatment with crab shell chitin or chitin octamer |
-1.1 | | AT4G40090 | 'bhlh100/101 double mutant' vs 'wild type' in 'none; root' | compound, genotype, organism part | Expression data from Arabidopsis roots and shoots grown with or without iron |
1.1 | | AT4G40090 | 'uvr-8; UV-B light regimen (345 nm); 1 hour; 305nm' vs 'uvr-8; UV-B light regimen (305 nm); control' | genotype, light, time, treatment | Transcription profiling of Arabodpsis seedings exposed to UV-B irradiation |
1 | | AT4G40090 | 'limited phosphate treatment' vs 'none' | environmental stress | Transcription profiling by high throughput sequencing of Arabidopsis roots upon exposure of phosphate starvation |
-1 | | AT4G40090 | 'wounding' at '1 hour' vs 'none' at '0 hour' | injury, time | Transcriptional response to wounding of Arabidopsis thaliana roots |
-1 | | AT4G40090 | 'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant' | compound, genotype | Transcription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment |
-1 | | AT4G40090 | 'rlk1 mutant' vs 'wild type' in 'water' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for rlk1 after treatment with chitooctaose |
-1 | | AT4G40090 | 'abscisic acids; 100 micromolar' vs 'none' in 'wild type genotype' | compound, genotype | Gene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant |
-1 | | AT4G40090 | '35S::WRKY23-SRDX' vs 'wild type genotype' in 'auxin; 10 micromolar' | compound, genotype | Microarray designed to find PIN polarity regulators downstream of TIR1/AFB |
1 | | AT4G40090 | 'gun4-1 mutant' vs 'wild type' in 'no compound' | genotype, growth condition | Transcription profiling by array of Arabidopsis mutant for gun4 or treated with gabaculin |
-1 | | AT4G40090 | 'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '30 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
1 | | AT4G40090 | 'top3A-2' vs 'wild type genotype' | genotype | Transcriptome analysis of top3A-2 complementation lines in Arabidopsis thaliana |
-1 | | AT4G40090 | 'indole-3-butyric acid; 10 micromolar; ibr1ibr3ibr10' vs 'DMSO; ibr1ibr3ibr10' | compound, genotype | Expression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA) |
-1 | | AT4G40090 | 'transgenic KANADI1 fused to GR domain' vs 'wild type genotype' in 'Collection day two' at '0 minute' | block, genotype, time | Expression data from Arabidopsis GR-REVOLUTA and KANADI1-GR transgenic seedlings |
-1 | | AT4G40090 | 'tunicamycin; 5 microgram per milliliter' vs 'none' in 'bzip17 -/- ; bzip28 -/-' | compound, genotype | mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers |
1 | | AT4G40090 | 'phr1 mutant' vs 'wild type genotype' in 'phosphate deprivation; root' | genotype, growth condition, organism part | Transcription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation |
1 | | AT4G40090 | 'fip37-4 LEC1:FIP37' vs 'wild type' | genotype | Transcription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings |
-1 | | AT4G40090 | 'MKK9DD mutant' vs 'wild type' in 'none; control' | compound, genotype, growth condition | Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes |
1 | | AT4G40090 | 'cbp80; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype' | genotype | Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq] |
1 | | AT4G40090 | 'sucrose; 1 percent' vs 'none' in 'wild type' | compound, genotype | Transcription profiling by array of Arabidopsis mutant for rbr1 after treatment with 1% sucrose |
-1 | | AT4G40090 | '100 micromolar ATP' vs 'control' in 'wild type' | genotype, growth condition | ATP effect on Arabidopsis roots |
1 | | AT4G40090 | 'overexpressing ERF115' vs 'wild-type' | genotype | Transcription profiling by array of root tips from Arabidopsis overexpressing ERF115, with mutated erf115 and wild-type controls |
-1 | | AT4G40090 | 'nutrient solution without potassium; root' vs 'control; root' | growth condition, organism part | Transcription profiling by array of Arabidopsis after potassium starvation or treatment with caesium |