AT5G52570 (BETA-OHASE 2)

arabidopsis thaliana

Beta-carotene 3-hydroxylase 2, chloroplastic

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Arabidopsis thaliana
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Showing 35 experiments:
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Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
3.3791 × 10-578.6
AT5G52570'15 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
6.9973 × 10-127-8
AT5G52570'Ler/Kas-2 hybrid' vs 'Kas-2' in 'wild type genotype'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
Adjusted p-valueLog2-fold change
1.5694 × 10-1527.6
AT5G52570'sulki1-8 mutant' vs 'wild type genotype' in 'Ler/Kas-2 hybrid'ecotype, genotypeRNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
00
Log2-fold change
6.4
AT5G52570'drought environment' vs 'normal watering' in 'vtc2.5 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
00
Log2-fold change
6.1
AT5G52570'drought environment' vs 'normal watering' in 'vtc2 mutant'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.3117 × 10-73-5.3
AT5G52570'Sei-0 x Col F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.488 × 10-2224.9
AT5G52570'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.2658 × 10-1244.9
AT5G52570'light pulse at ZT18' vs 'control'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis exposed to a pulse of white light at ZT18 to study the effect of light on alternative splicing
Adjusted p-valueLog2-fold change
2.4048 × 10-94-4.9
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.0818 × 10-104.9
AT5G52570'drought environment' vs 'normal watering' in 'wild type genotype'environmental stress, genotypeGene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
00
Log2-fold change
4.6
AT5G52570'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
7.1423 × 10-2044.6
AT5G52570'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.5192 × 10-284.6
AT5G52570'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'none' at '0 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
2.0232 × 10-64.4
AT5G52570'13 day' vs '7 day' in 'wild type'genotype, sampling time pointTranscription profiling by high throughput sequencing of Arabidopsis developing wild type and val1 embryos
Adjusted p-valueLog2-fold change
1.7608 × 10-5-4.3
AT5G52570'sid2-2; Alternaria brassicicola' at '24 hours post infection' vs 'wild type; mock' at '24 hours post infection'genotype, infect, sampling time pointResponses of Arabidopsis immune signaling mutants to Alternaria brassicicola infection
Adjusted p-valueLog2-fold change
1.4603 × 10-424.2
AT5G52570'heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
5.3681 × 10-324
AT5G52570'salt and heat stress' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis plants in response to a combination of salt and heat stress
Adjusted p-valueLog2-fold change
2.3951 × 10-29-3.9
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
5.2041 × 10-153.9
AT5G52570'24 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.4703 × 10-103.9
AT5G52570''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 10 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
2.392 × 10-303.7
AT5G52570'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '6 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
4.1264 × 10-8-3.7
AT5G52570'abi3-6 mutant' vs 'wild type' in '16 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
3.0799 × 10-6-3.6
AT5G52570'16 hour (dark)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
7.6945 × 10-243.4
AT5G52570'abscisic acid; 0.1 millimolar' vs 'none' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
9.6613 × 10-12-3.4
AT5G52570'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.925 × 10-6-3.4
AT5G52570'12 hour (dark)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
1.9737 × 10-93.3
AT5G52570'T-DNA knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
2.1599 × 10-6-3.3
AT5G52570'8 hour (light)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
4.5964 × 10-103.2
AT5G52570''Pseudomonas syringae pv. maculicola carrying AvrRpt2; 6 hour' vs 'none; 0 hour' in 'wild type genotype'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.6052 × 10-73.1
AT5G52570'after cold treatment at 4 degrees Celsius' vs 'before cold treatment'growth conditionTranscription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level
Adjusted p-valueLog2-fold change
1.4935 × 10-6-3.1
AT5G52570'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'gh3.5-1D heterozygous mutant'genotype, infectTranscription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls
Adjusted p-valueLog2-fold change
1.2463 × 10-53.1
AT5G52570'Pseudomonas syringae pv. tomato' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
5.4889 × 10-343
AT5G52570'AtRsgA-i homozygous knockout' vs 'wild type genotype'genotypeRNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
Adjusted p-valueLog2-fold change
8.6678 × 10-203
AT5G52570'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.1885 × 10-43
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
8.7819 × 10-222.9
AT5G52570'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '1 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
7.6865 × 10-112.9
AT5G52570'Piereis brassicae; larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.9155 × 10-92.9
AT5G52570'sodium sulfide; wild type' vs 'water; wild type'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
1.2386 × 10-82.9
AT5G52570'RNAi knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
8.8619 × 10-82.9
AT5G52570"leaf 8 wounded" vs "unwounded"growth conditionTranscription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls
Adjusted p-valueLog2-fold change
9.3319 × 10-10-2.8
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.5822 × 10-92.8
AT5G52570'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light
Adjusted p-valueLog2-fold change
2.4257 × 10-52.8
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
2.4296 × 10-32.8
AT5G52570'NaCl' vs 'control' in 'stele cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
6.1276 × 10-34-2.7
AT5G52570'mechanical stimulation' at '180 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
4.4823 × 10-22-2.7
AT5G52570'Sei-0 x Col-0 F1 hybrid' vs 'Col-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
4.2613 × 10-172.7
AT5G52570'gamma-butyrolactone; 25 micromolar' vs 'DMSO' in 'wounding' at '3 hour'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
1.0872 × 10-162.7
AT5G52570'Phytophthora parasitica' vs 'none' in 'gsnor1'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
1.8821 × 10-92.7
AT5G52570'ambient carbon dioxide 24h' vs 'ambient carbon dioxide 12h'growth condition, organism part, timeTranscription profiling by array of Arabidopsis grown in ambient or elevated carbon dioxide at low light levels
Adjusted p-valueLog2-fold change
2.5462 × 10-7-2.7
AT5G52570'vtc2' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
Adjusted p-valueLog2-fold change
7.2451 × 10-542.6
AT5G52570'1 hour of blue light exposure' vs 'none'environmental stressTranscription profiling by high throughput sequencing of Arabidopsis wild type plants during the shift from dark to blue light
Adjusted p-valueLog2-fold change
8.0086 × 10-24-2.6
AT5G52570'35 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
1.0522 × 10-92.6
AT5G52570'24h' vs '12h'organism part, timeTranscription profiling by array of Arabidopsis grown in elevated carbon dioxide levels in ambient light
Adjusted p-valueLog2-fold change
3.891 × 10-92.6
AT5G52570'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'whole plant flowering stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.5754 × 10-42.6
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
3.1058 × 10-132.5
AT5G52570'clf28 mutant' vs 'wild type' in 'root'genotype, organism partTranscription profiling by high throughput sequencing of Arabidopsis roots, shoots, inflorescences, and siliques of wild type and clf-28 mutant plants
Adjusted p-valueLog2-fold change
3.1702 × 10-13-2.5
AT5G52570'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.5536 × 10-8-2.5
AT5G52570'abi4 vtc2' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
Adjusted p-valueLog2-fold change
2.1615 × 10-72.5
AT5G52570'double mutant at3g03940/at518190 knockdown' vs 'wild type'genotypeOsmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [expression]
Adjusted p-valueLog2-fold change
8.6497 × 10-72.5
AT5G52570'At1G60900 homozygous knockout' vs 'wild type genotype'genotypeRNA-Seq analysis of Arabidopsis splicing factor U2AF65 against the wild type (Col).
Adjusted p-valueLog2-fold change
1.4528 × 10-62.5
AT5G52570'OsRLCK253 transgenic' vs 'wild type'genotypeRice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants
Adjusted p-valueLog2-fold change
2.0551 × 10-5-2.5
AT5G52570'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wild type'genotype, infect, timeTranscription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii
Adjusted p-valueLog2-fold change
2.2231 × 10-52.5
AT5G52570'light pulse in the middle of the day' vs 'day time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
2.3056 × 10-42.5
AT5G52570'light pulse in the middle of the night' vs 'night time control'growth conditionRNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock
Adjusted p-valueLog2-fold change
3.0385 × 10-32.5
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; guard cells'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
2.6001 × 10-2-2.5
AT5G52570'total RNA; turnip mosaic virus inoculated' vs 'total RNA; mock'RNA, infectThe effect of TuMV on translation initiation in Arabidopsis
Adjusted p-valueLog2-fold change
1.4291 × 10-14-2.4
AT5G52570'57 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
1.1406 × 10-62.4
AT5G52570'wounding' at '3 hour' vs 'none' at '0 hour'injury, timeTranscriptional response to wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
1.56 × 10-62.4
AT5G52570'wounding; 3 hour' vs 'none; 0 hour' in 'DMSO'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
4.9837 × 10-6-2.4
AT5G52570'24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei A6; virulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
6.9 × 10-62.4
AT5G52570'21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 avrRpm1'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.8529 × 10-52.4
AT5G52570'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '24 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
2.3671 × 10-52.4
AT5G52570'21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000 hrpA mutant'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
7.7903 × 10-52.4
AT5G52570'npr1-3' vs 'wild type' in '3,5-dichloroanthranilic acid' at '2 day'compound, genotype, timeTranscription profiling by array of Arabidopsis mutant for npr1 after treatment with 3,5-dichloroanthranilic acid or 2,6-dichloroisonicotinic acid
Adjusted p-valueLog2-fold change
5.0717 × 10-4-2.4
AT5G52570'20 hour (light)' vs '0 hour (light)'growth condition, timeTranscription profiling of diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
Adjusted p-valueLog2-fold change
5.2257 × 10-42.4
AT5G52570'catalase2 mutant' vs 'wild type; transferred to air for 2 days in short day length regime'genotype, growth conditionTranscription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod
Adjusted p-valueLog2-fold change
5.4912 × 10-42.4
AT5G52570'21 hour' vs '12 hour' in 'Pseudomonas syringae pv. tomato DC3000'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.0271 × 10-3-2.4
AT5G52570'Pseudomonas syringae pv tomato DC3000(avrRpt2)' vs 'none' in 'wild type genotype'genotype, infectTranscription profiling by array of Arabidopsis heterozygous mutant for gh3.5 after inoculation with Pseudomonas syringae pv tomato DC3000(avrRpt2) against wild type counterparts and uninfected controls
Adjusted p-valueLog2-fold change
5.9743 × 10-32.4
AT5G52570'Golovinomyces orontii; 8 hour' vs 'none; 0 hour' in 'wrky18, wrky40 double mutant'genotype, infect, timeTranscription profiling by array of Arabidopsis thaliana WRKY18/40 double knock out infected with Golovinomyces orontii
Adjusted p-valueLog2-fold change
1.0074 × 10-522.3
AT5G52570'det1-1 mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
1.2424 × 10-292.3
AT5G52570'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei K1; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.9117 × 10-192.3
AT5G52570'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'wild type'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
5.6957 × 10-102.3
AT5G52570'water; des1' vs 'water; wild type'compound, genotypeExogenous Sulfide Reverses the Alteration of Transcriptional Profiling of the des1-1 Mutant (Arabidopsis thaliana)
Adjusted p-valueLog2-fold change
7.0093 × 10-10-2.3
AT5G52570'Spt4 knock down' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis RNAi knock-down plants of SPT4-1 and SPT4-2
Adjusted p-valueLog2-fold change
3.0592 × 10-8-2.3
AT5G52570'RPS4 over-expression on eds1 mutant background' vs 'RPS4 over-expression' at '8 hour'phenotype, timeTranscription profiling by array of temperature-inducible transgenic Arabidopsis over-expressing RPS4 in EDS1 wild-type, eds1 or rrs1 mutant backgrounds 0, 2, 8, and 24 hours after induction to study RPS4-mediated innate immune response
Adjusted p-valueLog2-fold change
1.7267 × 10-72.3
AT5G52570'Piereis brassicae; larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
1.9836 × 10-7-2.3
AT5G52570'dexamethasone-induced STM overexpression' vs 'dexamethasone-induced STM knock down by RNAi' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
3.1379 × 10-72.3
AT5G52570'T-DNA knock out line 2' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
1.4604 × 10-62.3
AT5G52570'rps2 mutant' vs 'wild type genotype' in 'none' at '0 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
5.0922 × 10-42.3
AT5G52570'ozone 500 parts per billion' vs 'control'growth conditionArabidopsis thaliana response to ozone
Adjusted p-valueLog2-fold change
5.0922 × 10-42.3
AT5G52570'ozone 500 parts per billion' vs 'control'growth conditionFunctional Genomics of Ozone Stress in Arabidopsis.
Adjusted p-valueLog2-fold change
2.6831 × 10-3-2.3
AT5G52570'transgenics over expressing LecRKVI.2 (OH1)' vs 'wild type'genotypeTranscriptome profiling of LecRKVI.2 over-expressor plants.
Adjusted p-valueLog2-fold change
2.0292 × 10-2-2.3
AT5G52570'polysomal RNA; turnip mosaic virus inoculated' vs 'polysomal RNA; mock'RNA, infectThe effect of TuMV on translation initiation in Arabidopsis
Adjusted p-valueLog2-fold change
3.6104 × 10-46-2.2
AT5G52570'hos1-3 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis hos1-3 seedlings
Adjusted p-valueLog2-fold change
9.1484 × 10-172.2
AT5G52570'abscisic acid; 0.1 millimolar' vs 'none' in 'rbm25-1 mutant'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis rbm25-1 mutant seedlings before and after abscisic acid treatment
Adjusted p-valueLog2-fold change
3.0347 × 10-9-2.2
AT5G52570'seed after 48 h of stratification (48 h S)' vs 'seed after 12 h of stratification (12 h S)'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
7.4692 × 10-72.2
AT5G52570'wounding' at '1 hour' vs 'none' at '0 hour'injury, timeTranscriptional response to wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
1.2584 × 10-6-2.2
AT5G52570'phosphate-lacking medium' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
6.1292 × 10-6-2.2
AT5G52570'abi4-102' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for abi4 and/or vtc2
Adjusted p-valueLog2-fold change
1.9208 × 10-5-2.2
AT5G52570'24 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
7.4905 × 10-52.2
AT5G52570'coi1-2 mutant' vs 'wild type genotype' in 'Sclerotinia sclerotiorum' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
1.7102 × 10-42.2
AT5G52570'100 micromolar; fenclorim' vs 'control' at '4 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
7.8389 × 10-42.2
AT5G52570'dehydration stress' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
2.5739 × 10-332.1
AT5G52570'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant expressing MLA1-HA; Blumeria graminis f. sp. hordei K1; avirulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.6456 × 10-16-2.1
AT5G52570'42 day' vs '29 day'ageRNA-seq of Arabidopsis rosette leaves at four time points (29, 35, 42, and 57 day) during developmental senescence
Adjusted p-valueLog2-fold change
1.5795 × 10-72.1
AT5G52570'Phytophthora parasitica' vs 'none' in 'wild type genotype'genotype, infectRNA-sequence of Arabidopsis thaliana lines gsnor1 and Col-0 post infection of Phytophthora parasitica against controls
Adjusted p-valueLog2-fold change
4.7211 × 10-52.1
AT5G52570'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-3'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
5.8505 × 10-52.1
AT5G52570'18 hour' vs '6 hour' in 'pen2-1; pad4-1; sag101-2 triple loss of function mutant; Blumeria graminis f. sp. hordei A6; virulent'genotype, infect, phenotype, timeTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.1636 × 10-42.1
AT5G52570'100 micromolar; fenclorim' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
5.2271 × 10-9-2
AT5G52570'letm1-2 homozygous, letm2-1 heterozygous double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
1.0168 × 10-72
AT5G52570'RNAi knock out line 1' vs 'wild type' in 'Nd-1'ecotype, genotypeTranscription profiling by array of Arabidopsis mutant for At2g19270
Adjusted p-valueLog2-fold change
4.735 × 10-72
AT5G52570'3 percent glucose and 1 micromolar indole-3-acetic acid' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
6.4343 × 10-72
AT5G52570'met1 mutant' vs 'wild type' at '0 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
7.915 × 10-6-2
AT5G52570'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
2.9329 × 10-52
AT5G52570'Sclerotinia sclerotiorum' vs 'none' in 'coi1-2 mutant' at '48 hour'genotype, infect, timeTranscription profiling by array of Arabidopsis mutant for coi1 after infection with Sclerotinia sclerotiorum
Adjusted p-valueLog2-fold change
2.9795 × 10-52
AT5G52570'4 days in darkness and 18 hour in red continuous light' vs '4 days in darkness and 1 hour in red continuous light' in 'wild type'genotype, growth conditionGene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
Adjusted p-valueLog2-fold change
9.8675 × 10-42
AT5G52570'MgCl2' vs 'none' in 'ulp1c/ulp1d double mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ulp1c and ulp1d after inoculation with Pseudomonas syringae pv. tomato expressing mutant HopZ1a
Adjusted p-valueLog2-fold change
3.0671 × 10-32
AT5G52570'gpt2 T-DNA mutant' vs 'wild type genotype' in 'low light intensity' at '1 day'genotype, growth condition, timeAcclimation of photosynthesis to changes in the environment results decreases oxidative stress in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.8371 × 10-281.9
AT5G52570'pif quadruple mutant' vs 'wild type' in 'continuous dark (no light) regimen'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
7.6632 × 10-171.9
AT5G52570'link1link2 double mutant' vs 'wild type genotype' at '14 hour'genotype, timeRNA-seq of coding RNA from 9-day old Arabidopsis seedlings of link1link2 double mutants against wild-type controls grown under continuuous light or long day conditions and sampled across a 24-hour time-course
Adjusted p-valueLog2-fold change
7.0172 × 10-9-1.9
AT5G52570'pepr1/2' vs 'wild type genotype' in 'Pep1; 1 millimolar' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
3.5157 × 10-7-1.9
AT5G52570'letm1-2 heterozygous, letm2-1 homozygous double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
3.5626 × 10-6-1.9
AT5G52570'phosphate-lacking medium and resupplied with Pi for 4 h' vs 'complete medium' in 'wild type'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
2.8119 × 10-51.9
AT5G52570'abscisic acid; 50 micromolar' vs 'mock' in 'wild type'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
8.8265 × 10-51.9
AT5G52570'sid2-1 mutant; mock' vs 'wild type; mock'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis mutants in response to Pseudomonas syringae infection to study plant systemic acquired resistance
Adjusted p-valueLog2-fold change
2.6264 × 10-41.9
AT5G52570'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '4 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
1.6277 × 10-21.9
AT5G52570'phosphate deprivation' vs 'control' in 'wild type genotype; shoot'genotype, growth condition, organism partTranscription profiling by array of Arabidopsis mutant for phr1 and phl1 or phr1 only after phosphate deprivation
Adjusted p-valueLog2-fold change
5.2672 × 10-521.8
AT5G52570'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'none'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
5.2283 × 10-11-1.8
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '2 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
5.9427 × 10-101.8
AT5G52570'Pseudomonas syringae DC3000 COR-avrPphB strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
6.736 × 10-71.8
AT5G52570'DEWAX2 overexpression' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems
Adjusted p-valueLog2-fold change
7.2004 × 10-71.8
AT5G52570'OsSAP11 transgenic' vs 'wild type'genotypeRice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants
Adjusted p-valueLog2-fold change
4.3294 × 10-61.8
AT5G52570'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
1.8262 × 10-51.8
AT5G52570'essp3 and brm mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis seedlings mutant for essp3 and brm
Adjusted p-valueLog2-fold change
4.9367 × 10-5-1.8
AT5G52570'dexamethasone-induced STM overexpression' vs 'wild type' at '216 hour'phenotype, sampling time pointTranscription profiling by array time course of Arabidopsis thaliana Ler-1 plants with STM RNAi knock down or overexpression compared to controls
Adjusted p-valueLog2-fold change
5.9896 × 10-41.8
AT5G52570'18 hour' vs '12 hour' in 'Blumeria graminis f. sp. hordei K1; avirulent'infect, phenotype, timeTime course RNA-seq analysis of barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in defense phytohormone signaling-depleted Arabidopsis thaliana mutant.
Adjusted p-valueLog2-fold change
9.8667 × 10-41.8
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Cape Verde Islands'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
2.2558 × 10-3-1.8
AT5G52570'pkl-1' vs 'wild type'genotypeIdentify differentially expressed genes in 14-day-old pkl seedlings
Adjusted p-valueLog2-fold change
4.3914 × 10-31.8
AT5G52570'12 hour' vs '8 hour' in 'Pseudomonas syringae pv. tomato DC3000'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
4.8953 × 10-31.8
AT5G52570'NaCl' vs 'control' in 'endodermal and quiescent center cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
7.1725 × 10-31.8
AT5G52570'pad4 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
1.16 × 10-16-1.7
AT5G52570'exposed to 10 degree Celsius; wild type; 24 hour' vs 'control; wild type'environmental stress, genotype, timeGenome-wide analysis of wild type and gemin2 mutant plants [cold exposure]
Adjusted p-valueLog2-fold change
5.183 × 10-15-1.7
AT5G52570'mechanical stimulation' at '60 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
2.4976 × 10-9-1.7
AT5G52570'letm1-1 homozygous, letm2-1 heterozygous double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
1.1584 × 10-7-1.7
AT5G52570'letm1-1 heterozygous, letm2-1 homozygous double mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
2.4449 × 10-51.7
AT5G52570'arsenic; 200 micromolar' vs 'none' in 'Col-0'compound, ecotypeTranscriptome profiling identified genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis
Adjusted p-valueLog2-fold change
4.1918 × 10-5-1.7
AT5G52570'efr-1; elf18' at '10 hour' vs 'wild type; elf18' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
5.0119 × 10-5-1.7
AT5G52570'ahk2/ahk3/ahk4 triple mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ahk mutants
Adjusted p-valueLog2-fold change
2.3045 × 10-41.7
AT5G52570'catalase2 mutant' vs 'wild type; transferred to air for 4 days in short day length regime'genotype, growth conditionTranscription profiling by array of Arabidopsis catalase 2 mutant in response to CO2 level and photoperiod
Adjusted p-valueLog2-fold change
2.4148 × 10-41.7
AT5G52570'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root cortex'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
1.2087 × 10-31.7
AT5G52570'abscisic acid; 50 micromolar' vs 'mock' in 'ros1-4'compound, genotypeTranscription profiling by high throughput sequencing of Arabidopsis mutants ros1-3 and ros1-4 treated with ABA
Adjusted p-valueLog2-fold change
2.5783 × 10-31.7
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Tenela'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
6.5466 × 10-21-1.6
AT5G52570'Ler x C24 F1 hybrid' vs 'Landsberg erecta ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
1.7486 × 10-19-1.6
AT5G52570'Ler x C24 F1 hybrid' vs 'C24 ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
1.394 × 10-16-1.6
AT5G52570'bli-1 -/-; ire1b -/-' vs 'wild type genotype'genotypeBLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.8377 × 10-10-1.6
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
6.4394 × 10-9-1.6
AT5G52570'arr21c overexpressing line' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing arr21c
Adjusted p-valueLog2-fold change
2.7779 × 10-81.6
AT5G52570'excess light; none; 2 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
4.8062 × 10-6-1.6
AT5G52570'fls2c' vs 'wild type genotype' in 'flg22; 1 millimolar' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
4.9861 × 10-61.6
AT5G52570'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '12 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
2.8625 × 10-51.6
AT5G52570'polysome-bound RNA; 4 hour; white light' vs'polysome-bound RNA; dark'RNA, time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with white light
Adjusted p-valueLog2-fold change
9.0256 × 10-51.6
AT5G52570'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.3592 × 10-4-1.6
AT5G52570'csn5 (csn5a-2 csn5b) mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.4675 × 10-41.6
AT5G52570'Blumeria graminis f.sp. hordei' vs 'none' in 'wild type'genotype, infectTranscription profiling by array of Arabidopsis mutant for ataf1 after infection with Blumeria graminis f.sp. hordei
Adjusted p-valueLog2-fold change
2.6916 × 10-41.6
AT5G52570'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '180 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
8.9995 × 10-41.6
AT5G52570'wounding; 1 hour' vs 'none; 0 hour' in 'DMSO'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
3.1155 × 10-2-1.6
AT5G52570'gai mutant' vs 'wild type' in 'methyl jasmonate' at '1 hour'genotype, time, treatmentTranscription profiling by array of Arabidopsis DELLA mutants after treatment with flg22, methyl jasmonate, Alternaria brassicicola or Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
1.0154 × 10-231.5
AT5G52570'fip37-4 LEC1:FIP37' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fip37-4 LEC1:FIP37 seedlings
Adjusted p-valueLog2-fold change
2.2478 × 10-171.5
AT5G52570'warm/hot temperature regimen' vs 'none' in 'wild type genotype'environmental stress, genotypeGenome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq]
Adjusted p-valueLog2-fold change
7.9246 × 10-8-1.5
AT5G52570'ozone; 350 nanoliter' vs 'none' in 'Shahdara'compound, ecotypeTranscriptome analysis of apoplastic reactive oxygen species signalling in Arabidopsis thaliana accessions with varying ozone sensitivity.
Adjusted p-valueLog2-fold change
2.3112 × 10-7-1.5
AT5G52570'seed germinating in continuous light 6 h SL' vs 'seed germinating in continuous light 1 h SL'growth conditionTranscription profiling by array of Arabidopsis seeds during the germination ripening, stratification and germination
Adjusted p-valueLog2-fold change
3.1738 × 10-71.5
AT5G52570'chr11-1, chr17-1 double mutant' vs 'wild type' at '8 day'genotype, timeTranscription profiling by array of Arabidopsis leaf explants cultured in CIM from chr11-1, chr17-1 double mutant at 0 and 8 days after culture.
Adjusted p-valueLog2-fold change
2.0032 × 10-6-1.5
AT5G52570'apum23 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis apum23-1 mutants
Adjusted p-valueLog2-fold change
3.1156 × 10-5-1.5
AT5G52570'AT4G01050 knock out' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis TROL knock-out plants
Adjusted p-valueLog2-fold change
3.7316 × 10-51.5
AT5G52570'high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
2.9668 × 10-4-1.5
AT5G52570'arr22-ox' vs 'wild type' in 'none'genotype, growth conditionTranscription profiling by array of Arabidopsis overexpressing arr22 after treatment with t-zeatin
Adjusted p-valueLog2-fold change
1.0773 × 10-31.5
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 mutant; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
3.1316 × 10-31.5
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Coimbra'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
3.3798 × 10-3-1.5
AT5G52570'PAP, 100 micromolar; lithium chloride, 100 millimolar; ATP, 1 millimolar' vs 'none'stimulusRNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
Adjusted p-valueLog2-fold change
3.7408 × 10-31.5
AT5G52570"40 microampere of electric current for 10 second" vs "no electric current injection"growth conditionTranscription profiling by array of Arabidopsis leaves either under electric current injection or with distal wound against untreated controls
Adjusted p-valueLog2-fold change
5.0631 × 10-31.5
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Columbia-0'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
3.3921 × 10-13-1.4
AT5G52570'mechanical stimulation' at '10 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
5.3002 × 10-81.4
AT5G52570'low light; DBMIB; 24 micromolar; 2 hour' vs 'low light; none; 0 hour'compound, growth condition, timeTranscription profiling by array of Arabidopsis leaves exposed to excess light and DBMIB
Adjusted p-valueLog2-fold change
6.9811 × 10-81.4
AT5G52570'mannitol; 300 millimolar' vs 'none' in 'pyl duodecuple loss of function mutant'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
1.3107 × 10-61.4
AT5G52570'pif1pif3pif4pif5 (pifq) mutant' vs 'wild type' in 'seedling; darkness'developmental stage, genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for pif1, pif3, pif4 and pif5 after growth in darkness or red light
Adjusted p-valueLog2-fold change
1.1753 × 10-51.4
AT5G52570'paclobutrazol; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
6.2645 × 10-51.4
AT5G52570'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'bzip1, bzip53 double knockout' at '6 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
9.8201 × 10-51.4
AT5G52570'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'wild type'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
1.1057 × 10-41.4
AT5G52570'flg22; 1 millimolar' vs 'none' in 'wild type genotype' at '90 minute'compound, genotype, timeRNAseq of wt and receptor mutant lines in response to 7 elicitor treatments over a 6-point time course
Adjusted p-valueLog2-fold change
1.1989 × 10-41.4
AT5G52570'steady-state RNA; 4 hour; white light' vs'steady-state RNA; dark'RNA, time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with white light
Adjusted p-valueLog2-fold change
1.9548 × 10-4-1.4
AT5G52570'abi3-6 mutant' vs 'wild type' in '12 day'age, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 2]
Adjusted p-valueLog2-fold change
2.8609 × 10-4-1.4
AT5G52570'cycloheximide' vs 'control'treatmentTranscription profiling by array of Arabidopsis transcription factor ABI3 in root protoplasts
Adjusted p-valueLog2-fold change
4.7166 × 10-41.4
AT5G52570'1 micromolar salicylic acid at ZT36' vs 'water at ZT36' at '3 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
1.3781 × 10-3-1.4
AT5G52570'sodium chloride; 50 millimolar; wild type genotype' vs 'none; ; wild type genotype'compound, genotypeTranscription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride
Adjusted p-valueLog2-fold change
1.9773 × 10-21.4
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'wild type genotype; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
4.0731 × 10-2-1.4
AT5G52570'ndufa1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis ndufa1 mutants
Adjusted p-valueLog2-fold change
6.301 × 10-261.3
AT5G52570'35S:LSD1-GFP' vs 'wild type genotype' in 'none'compound, genotypeRNA-seq to investigate dual role of lesion simulating disease 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
4.1155 × 10-141.3
AT5G52570'long Poly(A)-tail; paps1-1' vs 'long Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.152 × 10-9-1.3
AT5G52570'Sei-0 x Col-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '1 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
1.2127 × 10-61.3
AT5G52570'tmk1-1' vs 'wild type genotype'genotypeTMK1-mediated transcriptional auxin signaling guides differential growth in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.4083 × 10-6-1.3
AT5G52570'hda5 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
7.8492 × 10-61.3
AT5G52570'met1 mutant' vs 'wild type' at '4 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
1.9987 × 10-5-1.3
AT5G52570'hda9 mutant' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of Arabidopsis fve, fld, and hda6 mutant plants
Adjusted p-valueLog2-fold change
8.966 × 10-5-1.3
AT5G52570'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-2 mutant'genotype, infectTranscription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2
Adjusted p-valueLog2-fold change
1.2687 × 10-41.3
AT5G52570'100 micromolar; 4-chloro-6-methyl-2-phenylpyrimidine' vs 'control' at '24 hour'compound, timeTranscription profiling by array of Arabidopsis treatment with fenclorim or 4-chloro-6-methyl-2-phenylpyrimidine
Adjusted p-valueLog2-fold change
1.2743 × 10-4-1.3
AT5G52570"rps10 RNAi; late onset of silencing (P3)" vs "none; wild type"RNA interference, phenotypeMicroarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein
Adjusted p-valueLog2-fold change
1.2807 × 10-4-1.3
AT5G52570'spl13 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for or overexpressing spl13
Adjusted p-valueLog2-fold change
1.378 × 10-4-1.3
AT5G52570'sodium chloride; 50 millimolar; atpao5-3 mutant' vs 'none; ; atpao5-3 mutant'compound, genotypeTranscription profiling by array of Arabidopsis wild type and polyamine oxidase 5 loss-of-function mutant exposed to sodium chloride
Adjusted p-valueLog2-fold change
6.1604 × 10-41.3
AT5G52570'sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
6.4598 × 10-41.3
AT5G52570'antimycin A; 50 micromolar' vs 'water' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis Col:LUC and rao1 mutants under 3 hour stress treatment with antimycin A
Adjusted p-valueLog2-fold change
3.4491 × 10-31.3
AT5G52570'spch' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis speechless, scrm-D and scrm-D;mute mutant seedlings
Adjusted p-valueLog2-fold change
6.0458 × 10-31.3
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'agb1-2 gpa1-4 double mutant; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
8.4948 × 10-3-1.3
AT5G52570'0.1 mM nitrate' vs '10 mM nitrate' in 'wild type genotype'genotype, growth conditionTranscriptional profiling of Arabidopsis constitutively expressing Medicago truncatula NRT1 PTR FAMILY 1.7
Adjusted p-valueLog2-fold change
1.0483 × 10-21.3
AT5G52570'0.125 mM gold for 24 hours' vs 'untreated control'growth conditionTranscription profiling by array of roots of hydroponically grown Arabidopsis treated with 0.125 mM gold against untreated control to study the uptake of gold
Adjusted p-valueLog2-fold change
2.9226 × 10-2-1.3
AT5G52570'low water potential stress' vs 'control' in 'wild type'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
3.1506 × 10-111.2
AT5G52570'short Poly(A)-tail; paps1-1' vs 'short Poly(A)-tail; wild type'RNA, genotypeGenome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
2.3342 × 10-10-1.2
AT5G52570'C24 x Ler F1 hybrid' vs 'Landsberg erecta ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
1.7734 × 10-9-1.2
AT5G52570'C24 x Ler F1 hybrid' vs 'C24 ecotype'genotypeTranscription profiling by high throughput sequencing of Arabidopsis Ler and C24 ecotypes and their reciprocal hybrids
Adjusted p-valueLog2-fold change
4.0855 × 10-7-1.2
AT5G52570'letm2-1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis wild-type seedlings and either single or double knock-out mutants of LETM1 or LETM2
Adjusted p-valueLog2-fold change
9.0084 × 10-71.2
AT5G52570'xrn3-8 mutant' vs 'wild type genotype' at 'immediately after cordycepin treatment'genotype, sampling time pointTranscription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin
Adjusted p-valueLog2-fold change
3.3941 × 10-61.2
AT5G52570'S-nitrosocysteine; 1 millimolar' vs 'buffer'compoundTranscription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO)
Adjusted p-valueLog2-fold change
1.2716 × 10-51.2
AT5G52570'high light; RAP2.4a T-DNA Insertion (At1g36060)' vs 'control; RAP2.4a T-DNA Insertion (At1g36060)'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
1.4949 × 10-5-1.2
AT5G52570'mbd6 mutant' vs 'wild type genotype'genotypeTranscription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.2686 × 10-51.2
AT5G52570'met1 mutant' vs 'wild type' at '6 hour'genotype, timeTranscription profiling by array of arabidopsis wild type and met1 mutant calli cultured on shoot induction medium for 0, 4 and 6 hours
Adjusted p-valueLog2-fold change
7.9069 × 10-5-1.2
AT5G52570'9 hr hypoxia' vs '9 hr control' in 'total mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
1.236 × 10-4-1.2
AT5G52570'inducible 35S:LOB-GR line' vs 'wild type' in 'none'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.268 × 10-41.2
AT5G52570'mock inoculation' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
2.141 × 10-41.2
AT5G52570'3 percent glucose' vs 'none'compoundTranscription profiling of Arabidopsis seedlings treated with glucose and indole-3-acetic acid (auxin) to study glucose-auxin interactions
Adjusted p-valueLog2-fold change
3.7948 × 10-4-1.2
AT5G52570'phosphate-lacking medium' vs 'complete medium' in 'spx1,spx2 double mutant'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
5.2894 × 10-4-1.2
AT5G52570'srk2dei triple mutant' vs 'wild type' in '50 micromolar abscisic acid'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
6.163 × 10-41.2
AT5G52570'mock inoculation' vs 'control' in 'agb1-1 mutant'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for agb1 after infection with Plectosphaerella cucumerina
Adjusted p-valueLog2-fold change
6.1871 × 10-41.2
AT5G52570'50 micromolar; abscisic acid' vs 'control (ethanol vehicle)' in 'gpa1-4 mutant; leaf'compound, genotype, organism partTranscription profiling by array of Arabidopsis mutant for agb1 and/or gpa1 after treatment with abscisic acid
Adjusted p-valueLog2-fold change
6.4443 × 10-4-1.2
AT5G52570'hmr-5 null mutant' vs 'wild type genotype'genotypeTranscription profiling by array of Arabidopsis hemera null (hmr-5) and weak-allele (hmr-22) photomorphogenetic mutants against wild-type controls grown under red light
Adjusted p-valueLog2-fold change
1.9735 × 10-3-1.2
AT5G52570'Col-0 x Sei-0 F1 hybrid' vs 'Sei-0' in 'Pseudomonas syringae pv. tomato str. DC3000' at '3 day'genotype, infectTranscription profiling by high throughput sequencing of two Arabidopsis accessions, Col-0 and Sei-0, and their reciprocal hybrids after infiltration with Pst DC3000
Adjusted p-valueLog2-fold change
2.1547 × 10-3-1.2
AT5G52570'low water potential stress' vs 'control' in 'hai1-2 mutant'genotype, growth conditionComparison of low water potential (drought)-regulated gene expression in wild type (Col-0) and the hai1-2 (At5g59220) mutant
Adjusted p-valueLog2-fold change
2.6255 × 10-31.2
AT5G52570'12 hour' vs '8 hour' in 'Pseudomonas syringae pv. tomato DC3000 hrpA mutant'infect, timeTranscription profiling by array of Arabidopsis after infection with different strains of Pseudomonas syringae pv. tomato DC3000
Adjusted p-valueLog2-fold change
3.2335 × 10-3-1.2
AT5G52570'nhx5-1/nhx6-1 knock outs' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis AtNHX5 and AtNHX6 single and double knock out mutants
Adjusted p-valueLog2-fold change
3.3921 × 10-31.2
AT5G52570'Pseudomonas syringae DC3000 COR-deltahrpS strain' vs 'mock' in 'wild type'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
4.458 × 10-3-1.2
AT5G52570'5-aza-2-deoxycytidine 20 milligram per liter' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for ddm1
Adjusted p-valueLog2-fold change
4.4951 × 10-31.2
AT5G52570'Piereis brassicae; eggs and larval feeding' vs 'none; none' in 'mid rosette growth stage; leaf'developmental stage, infect, organism part, stimulusRNA-Seq of Arabidopsis thaliana plants primed by insect eggs from Pieris brassicae and triggered by insect herbivory against untreated controls in two different developmental phases (vegetative vs. reproductive)
Adjusted p-valueLog2-fold change
4.7604 × 10-31.2
AT5G52570'2 hour; excess light' vs '0 hour; low light' in 'wild type'genotype, growth condition, timeTranscription profiling by array of Arabidopsis after exposure to excess light
Adjusted p-valueLog2-fold change
1.484 × 10-2-1.2
AT5G52570'srk2dei triple mutant' vs 'wild type' in 'dehydration stress'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
1.5097 × 10-2-1.2
AT5G52570'rps2 mutant' vs 'wild type genotype' in 'Pseudomonas syringae pv. maculicola carrying AvrRpt2' at '10 hour'genotype, infect, timeExpression profiling of Col-0 and rps2 treated with Psm:AvrRpt2
Adjusted p-valueLog2-fold change
1.6415 × 10-21.2
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Rschew'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
2.1654 × 10-121.1
AT5G52570'pUBI10::mCherry-GR-linker-WUS' vs 'wild type genotype' in 'trichostatin; 1 micromolar'compound, genotypeWUSCHEL acts as a rheostat on the auxin pathway to maintain apical stem cells in Arabidopsis [RNA-seq]
Adjusted p-valueLog2-fold change
1.5214 × 10-71.1
AT5G52570'light regimen for 6 hour' vs 'continuous dark (no light) regimen' in 'wild type'genotype, growth conditionTranscription profiling by high throughput sequencing of Arabidopsis wild type, det1-1 mutant, and pif quadruple mutant seedlings grown in the dark and of wild type seedlings exposed to white light for 6 hours
Adjusted p-valueLog2-fold change
3.9473 × 10-7-1.1
AT5G52570'csn3-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
2.0975 × 10-6-1.1
AT5G52570'Hyaloperonospora parasitica arabidopsis Noco2' vs 'none' in 'wrky72-1 mutant'genotype, infectTranscription profiling by array of Arabidopsis mutant for wrky72 after infection with Hyaloperonospora parasitica arabidopsis Noco2
Adjusted p-valueLog2-fold change
2.2985 × 10-6-1.1
AT5G52570'350 ppb ozone exposure for 2hr' vs 'control' in 'tga2 tga5 tga6'genotype, growth conditionRNA-seq of two arabidopsis triple mutants coi1-16 ein2 sid2 and tga2 tga5 tga6 related to Jasmonic acid, salicylic acid and ethylene signaling under ozone treatment to identify hormone-independant apoplastic reactive oxygen species (ROS) signaling
Adjusted p-valueLog2-fold change
3.3377 × 10-6-1.1
AT5G52570'prmt5 mutant' vs 'wild type'genotypeGenome-wide analysis of the prmt5 and prmt4a;4b mutant transcriptomes
Adjusted p-valueLog2-fold change
7.5197 × 10-6-1.1
AT5G52570'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'none'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
5.3687 × 10-51.1
AT5G52570'abscisic acid; 20 micromolar' vs 'none' in 'embryo'compound, organism partTranscription profiling by array of Arabidopsis whole embryos and endosperm after treatment with abscisic acid or paclobutrazol
Adjusted p-valueLog2-fold change
1.2956 × 10-41.1
AT5G52570'sodium chloride; 150 millimolar' vs 'control; 0 millimolar' in 'wild type' at '3 hour'compound, genotype, timeTranscription profiling by array of Arabidopsis roots treated with salt from bzip1, bzip53 double knockout
Adjusted p-valueLog2-fold change
1.554 × 10-4-1.1
AT5G52570'inducible 35S:LOB-GR line' vs 'wild type' in 'dexamethasone; 5 micromolar'compound, genotypeTranscriptome analysis of genes regulated by overexpression of LATERAL ORGAN BOUNDARIES (LOB) in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
1.5827 × 10-41.1
AT5G52570'psad1-1 stn7-1' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for psae1, psad1 or stn7, or double mutant for psae1 and stn7 or psad1 and stn7
Adjusted p-valueLog2-fold change
1.6774 × 10-4-1.1
AT5G52570'MYB96 overexpression' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis overexpressing MYB96 or myb96 knock out mutants
Adjusted p-valueLog2-fold change
2.3916 × 10-4-1.1
AT5G52570'bru1 mutant' vs 'wild type'genotypeTranscription profiling by array of Arabidopsis mutant for bru1
Adjusted p-valueLog2-fold change
2.5488 × 10-41.1
AT5G52570'dexamethasone' vs 'mock'treatmentTranscription profiling of Arabidopsis WUSCHEL targets
Adjusted p-valueLog2-fold change
2.7586 × 10-41.1
AT5G52570'GID1b over expression in sly1-2 mutant' vs 'wild type genotype' in '2 weeks dry after-ripening' plus '0 hour growth in light'environmental history, genotype, sampling time pointTranscriptome changes associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
Adjusted p-valueLog2-fold change
3.3975 × 10-41.1
AT5G52570'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root columella root cap'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
3.8431 × 10-4-1.1
AT5G52570'480 minute' vs '0 minute' in 'indole-3-acetic acid; wild type; primary root elongation zone'compound, genotype, organism part, timeTranscription profiling by array of Arabidopsis root tips from arf7, arf19 double mutant and wild type plants in response to auxin
Adjusted p-valueLog2-fold change
4.9829 × 10-41.1
AT5G52570'from low light to high light; wild type' vs 'control; wild type'environmental stress, genotypeTranscription profiling by array of Arabidopsis thaliana Col-0 and RAP2.4a mutants under time dependent light stress by transfer to high light
Adjusted p-valueLog2-fold change
5.526 × 10-4-1.1
AT5G52570'1 micromolar salicylic acid at ZT24' vs 'water at ZT24' at '0 hour'time, treatmentTranscription profiling by array of Arabidopsis seedlings treated with salycilic acid at ZT24 (subjective morning) or ZT36 (evening)
Adjusted p-valueLog2-fold change
1.4621 × 10-3-1.1
AT5G52570'9 hr hypoxia' vs '9 hr control' in 'polysomal mRNA'RNA, growth conditionTranscription profiling by array of Arabidopsis after short and prolonged hypoxia treatment
Adjusted p-valueLog2-fold change
3.5963 × 10-3-1.1
AT5G52570"rps10 RNAi; early onset of silencing (P2)" vs "none; wild type"RNA interference, phenotypeMicroarray data sets of Arabidopsis rps10 mutants with RNAi-silenced expression of mitoribosomal S10 protein
Adjusted p-valueLog2-fold change
4.0306 × 10-3-1.1
AT5G52570'tga2;tga5;tga6 mutant; phytoprostane' vs 'Col-0; phytoprostane'compound, genotypeTranscription profiling by array of Arabidopsis mutant for tga2, tga5 and tga6 after treatment with phytoprostane or 12-oxo-phytodienoic acid
Adjusted p-valueLog2-fold change
4.4408 × 10-31.1
AT5G52570'low pH (pH 4.6)' vs 'standard pH (pH 5.7)' in 'root endodermis and quiescent center'growth condition, organism partTranscription profiling by array of Arabidopsis root cells after growth in low pH conditions
Adjusted p-valueLog2-fold change
4.8097 × 10-31.1
AT5G52570'NaCl' vs 'control' in 'cortex cells'cell type, growth conditionTranscription profiling by array of Arabidopsis root cells after treatment with NaCl
Adjusted p-valueLog2-fold change
8.6721 × 10-3-1.1
AT5G52570'mkk1;mkk2 knockout; none' vs 'wild_type; none'compound, genotypeTranscription profiling by array of Arabidopsis mutant for mkk1 and/or mkk2 after treatment with BTH
Adjusted p-valueLog2-fold change
1.9399 × 10-2-1.1
AT5G52570'elf3-7' vs 'wild type' at '16 degree celsius'genotype, temperatureTranscription profiling by array of Arabidopsis mutant for tfl1 or elf2 after growth at different temperatures
Adjusted p-valueLog2-fold change
4.7713 × 10-21.1
AT5G52570'wounding; 6 hour' vs 'none; 0 hour' in 'DMSO'compound, injury, timeThe effect of γ-butyrolactone (MB3) treatment on the transcript response after wounding of Arabidopsis thaliana roots
Adjusted p-valueLog2-fold change
4.9445 × 10-2-1.1
AT5G52570'pnp1-1' vs 'wild type' in 'nutrient medium minus phosphate' at '3 hour'genotype, growth condition, timeTranscription profiling by array of Arabidopsis mutant for pnp after phosphate deprivation
Adjusted p-valueLog2-fold change
4.1699 × 10-91
AT5G52570'silver(1+) nitrate, 10 micromolar; N-benzyladenine, 3 micromolar' vs 'silver(1+) nitrate, 10 micromolar'stimulusEthylene-independent Promotion of Photomorphogenesis by Cytokinin Requires a Functional Cytokinin and Light Signaling Pathway.
Adjusted p-valueLog2-fold change
4.3356 × 10-9-1
AT5G52570'dexamethasone; 10 micromolar' vs 'dimethyl sulfoxide; 0.01 percent' in 'mCherry-RAX1-GR'compound, genotypeRNA-seq of Arabidopsis 14 day-old seedlings expressing either mCherry-RAX1-GR or mCherry-GR with 4h mock vs. dexamethasone treatment
Adjusted p-valueLog2-fold change
1.4692 × 10-7-1
AT5G52570'mechanical stimulation' at '40 minute' vs 'none'stimulus, timeRNAseq on touch-treated Arabidopsis thaliana plants
Adjusted p-valueLog2-fold change
1.1583 × 10-5-1
AT5G52570'4h' vs '2h'organism part, timeTranscription profiling by array of Arabidopsis grown in ambient carbon dioxide and ambient light
Adjusted p-valueLog2-fold change
1.3738 × 10-51
AT5G52570'xrn3-8 mutant' vs 'wild type genotype' at '60 minutes after cordycepin treatment'genotype, sampling time pointTranscription profiling by array of a stably RNAi-silenced nuclear 5’-3’ exonuclease XRN3 mutant line in Arabidopsis thaliana after transcriptional inhibition with cordycepin
Adjusted p-valueLog2-fold change
2.0469 × 10-5-1
AT5G52570'salicylic acid; 0.5 millimolar' vs 'none' in 'wild type genotype'compound, genotypeSalicylic acid-induced gene expression in wild-type Col-0 and mutant upl3-4 Arabidopsis thaliana plants.
Adjusted p-valueLog2-fold change
2.1992 × 10-5-1
AT5G52570'bli-1 -/-' vs 'wild type genotype'genotypeBLISTER safeguards the protein kinase activity of ER stress modulator IRE1A during plant growth and development in Arabidopsis thaliana
Adjusted p-valueLog2-fold change
3.8212 × 10-5-1
AT5G52570'mil4 sid2 double mutant' vs 'wild type' in 'water'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for mil4 and/or sid2 after treatment with benzothiadiazole
Adjusted p-valueLog2-fold change
5.3764 × 10-51
AT5G52570'Pseudomonas syringae DC3000' vs 'axenic plant' at '7 day'growth condition, infect, sampling time pointLeaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
Adjusted p-valueLog2-fold change
6.1217 × 10-5-1
AT5G52570'PIF5 overexpressing; low red/far-red light ratio' vs 'wild type; low red/far-red light ratio'genotype, treatmentPhytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light
Adjusted p-valueLog2-fold change
7.3718 × 10-51
AT5G52570'lec1-1 mutant' vs 'wild type' in '12 day; Ws'age, ecotype, genotypeGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
Adjusted p-valueLog2-fold change
4.9813 × 10-41
AT5G52570'pyl duodecuple loss of function mutant' vs 'wild type genotype' in 'mannitol; 300 millimolar'compound, genotypeGene expression responses to ABA and to osmotic stress in the Arabidopsis thaliana pyl duodecuple mutant
Adjusted p-valueLog2-fold change
8.1605 × 10-41
AT5G52570'50 micromolar abscisic acid' vs 'control' in 'wild type'genotype, growth conditionTranscription profiling by array of Arabidopsis thaliana wild type plants (Col-0) and srk2dei triple knockout mutant to investigate the functions of ABA-activated protein kinases, SRK2D/SnRK2.2, SRK2E/OST1 and SRK2I/SnRK2.3
Adjusted p-valueLog2-fold change
8.8816 × 10-4-1
AT5G52570'csn4-1 mutant' vs 'wild type' in 'light'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for csn after growth in light and dark conditions
Adjusted p-valueLog2-fold change
1.0367 × 10-31
AT5G52570'salicylic acid' vs 'none' in 'wild type'compound, genotypeTranscription profiling by array of Arabidopsis mutant for sdh1 after treatment with salicylic acid
Adjusted p-valueLog2-fold change
1.1425 × 10-31
AT5G52570'Pseudomonas syringae DC3000 COR- strain' vs 'mock' in 'upf1-5 mutant'genotype, infectTranscription profiling by high throughput sequencing of Arabidopsis upf1-5 mutant challenged with pathogenic or non-pathogenic Pseudomonas syringae DC3000 strains
Adjusted p-valueLog2-fold change
1.3508 × 10-3-1
AT5G52570'pepr1-1 Pepr2-3; Pep2' at '10 hour' vs 'wild type; Pep2' at '10 hour'genotype, time, treatmentExpression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2.
Adjusted p-valueLog2-fold change
1.7808 × 10-3-1
AT5G52570'epcr1-/-; epcr2-/-' vs 'wild type genotype'genotypeThe PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq]
Adjusted p-valueLog2-fold change
3.2444 × 10-3-1
AT5G52570'indole-3-acetic acid; 5 micromolar' vs 'none' in 'epidermis'compound, organism partTranscription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls
Adjusted p-valueLog2-fold change
3.6188 × 10-3-1
AT5G52570'brm-1 ref6-1' vs 'wild type'genotypeTranscription profiling by high throughput sequencing of BRAHMA (BRM) and H3K27 demethylase (REF6) mutants in Arabidopsis
Adjusted p-valueLog2-fold change
4.0504 × 10-3-1
AT5G52570'spx1,spx2 double mutant' vs 'wild type' in 'complete medium'genotype, growth conditionExpression data from Col-0 and sp1,spx2 under phosphate starvation stress and recovery after resupplying phosphate
Adjusted p-valueLog2-fold change
4.1961 × 10-31
AT5G52570'dimethylthiourea' vs 'ethanol'compoundTranscription profiling by array of Arabidopsis T87 cells after treatment with abscisic acid and dimethylthiourea
Adjusted p-valueLog2-fold change
4.9886 × 10-31
AT5G52570'stunted msh1' vs 'wild type'RNA interferenceTranscript profiling of Arabidopsis msh1 mutants
Adjusted p-valueLog2-fold change
5.1639 × 10-31
AT5G52570'DCC1 mutant' vs 'wild type genotype'genotypeThioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
Adjusted p-valueLog2-fold change
5.3071 × 10-3-1
AT5G52570'coi1 mutant' vs 'wild type' in 'Pseudomonas syringae ES4326'genotype, growth conditionTranscription profiling by array of Arabidopsis mutant for sid2, pad4, pad2, nor1, ein2 or coi1 after infection with Pseudomonas syringae ES4326
Adjusted p-valueLog2-fold change
6.9015 × 10-31
AT5G52570'4 degree celsius' vs '20 degree celsius' in 'Landsberg erecta'ecotype, temperatureTranscription profiling by array of nine ecotypes of Arabidopsis before and after cold acclimation
Adjusted p-valueLog2-fold change
8.8452 × 10-3-1
AT5G52570'karrikin; 1 micromolar; ga1-3 mutant' vs 'karrikin; 1 micromolar; wild type'compound, genotypeKarrikin responses in Arabidopsis thaliana seed
Adjusted p-valueLog2-fold change
1.1571 × 10-2-1
AT5G52570'indole-3-acetic acid; 5 micromolar' vs 'none' in 'stele'compound, organism partTranscription profiling by array of four distinct tissues of Arabidopsis root and whole root treated with (auxin) indole-3-acetic acid against mock-treated controls
Adjusted p-valueLog2-fold change
2.8387 × 10-2-1
AT5G52570'cbp80; atxr5; atxr6 triple loss of function mutant' vs 'wild type genotype'genotypeArabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
Adjusted p-valueLog2-fold change
4.0685 × 10-21
AT5G52570'wounding' at '6 hour' vs 'none' at '0 hour'injury, timeTranscriptional response to wounding of Arabidopsis thaliana roots
Synonym
F6N7.5, B2, CHY2, At5g52570
Gene ontology
Plant ontology
InterPro
Ensembl gene
Ensembl transcript
Ensembl protein
Entrez
UniProt
Gene biotype
Design element
248311_at