ENSRNOG00000015189 (Bbs9)

rattus norvegicus

Bardet-Biedl syndrome 9

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Rattus norvegicus
Organism part
Showing 70 experiments:
image/svg+xml human body features 2009-05-27 Sjef text : Kevin (tsaitgaist) REDON http://commons.wikimedia.org/wiki/File:Human_body_features.svg cerebral cortex pleura brain heart breast thyroid gland adrenal gland lymph node bone marrow adipose tissue skeletal muscle leukocyte frontal cortex temporal lobe prefrontal cortex pituitary gland atrial appendage aorta coronary artery gastroesophageal junction left ventricle hippocampus hippocampus caecum ileum rectum nose tongue left atrium pulmonary valve mitral valve penis vas deferens seminal vesicle testis epididymis eye nasal septum oral cavity tonsil nasal pharynx lung spinal cord amygdala trachea throat bronchus tricuspid valve diaphragm liver stomach spleen duodenum gall bladder pancreas colon small intestine appendix smooth muscle urinary bladder prostate gland nerve cerebellum cerebellar hemisphere kidney renal cortex bone cartilage esophagus salivary gland parotid gland submandibular gland skin
Created with Highcharts 6.2.0adiposediaphragmhypothalamusolfactory apparatussigmoid colonurinary bladderaortabasal ganglionbreastcerebral cortexdura materesophagusfrontal cortexheart left ventricleleft kidneylower leg skinmiddle frontal gyrusmuscle of legparotid glandponspulmonary veinright cardiac atriumsmooth muscle tissuesubmandibular glandtestistibial nervevisual cortex
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68 FANTOM5 project - adult
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GTEX - organism part
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32 Uhlen's Lab
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Hallstrom et al., 2014 - Organism part
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68 FANTOM5 project - fetal
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19 NIH Epigenomics Roadmap
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Illumina Body Map
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HDBR developing brain - 9 post …
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HDBR developing brain - 12 post …
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HDBR developing brain - Carnegie Stage …
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ENCODE (M. Snyder lab)
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HDBR developing brain - 16 post …
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HDBR developing brain - Carnegie Stage …
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HDBR developing brain - 13 post …
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HDBR developing brain - Late 8 post …
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Mammalian Kaessmann
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HDBR developing brain - 17 post …
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HDBR developing brain - Carnegie Stage …
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Zhu et al., 2018 - Organism part
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HDBR developing brain - Carnegie Stage …
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HDBR developing brain - 15 post …
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HDBR developing brain - 19 post …
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Human Protein Atlas
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Human2021_Tissues - Wang et al. 2019
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Human Proteome Map - adult
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Doll et al., 2017 - Organism part
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McKetney et al., 2019 – organism part …
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McKetney et al., 2019 – organism part …
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brain regions
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Human Proteome Map - fetus
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ovary, pancreas, liver, subst. nigra
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Linscheid et al., 2020 – Tissues - …
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cerebellum and occipital lobe
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McKetney J et.al., 2019 - Individual - …
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Proteomics
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Transcriptomics
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Kingdom
Species
Experiment type
Experimental variables
Regulation
Log2-fold changeSpeciesGene nameComparisonExperimental variablesExperiment name
Adjusted p-valueLog2-fold change
4.5373 × 10-5-2.5
Bbs9'96 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
1.4271 × 10-4-2.4
Bbs9'72 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
3.3236 × 10-4-2.3
Bbs9'48 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
7.848 × 10-5-2.2
Bbs9'36 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
6.2343 × 10-10-1.8
Bbs9'azoxymethane; 5 milligram per kilogram' vs 'saline' in 'distal colon'compound, organism partGlobal gene expression of the colonic epithelium from proximal and distal sections of azoxymethane and saline-treated Sprague Dawley rats
Adjusted p-valueLog2-fold change
1.876 × 10-4-1.8
Bbs9'18 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
2.2364 × 10-4-1.7
Bbs9'24 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
1.4145 × 10-8-1.6
Bbs9'24 hour culture at sarcomere length = 2.2 microns' vs 'control'stimulusRNA-Seq of rat myocardial slices cultured with biomimetic electromechanical stimulation
Adjusted p-valueLog2-fold change
7.5937 × 10-4-1.5
Bbs9'13 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
3.9281 × 10-13-1.4
Bbs9'ajmaline; 300 milligram per kilogram' vs 'none' in 'ajmaline; liver' at '3 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with A.
Adjusted p-valueLog2-fold change
1.1185 × 10-7-1.4
Bbs9'4 hour' vs '0 hour' in 'hepatocyte'cell type, timeAssessing concordance of drug-induced transcriptional response in rodent liver and cultured hepatocytes
Adjusted p-valueLog2-fold change
5.847 × 10-3-1.4
Bbs9'ajmaline; 300 milligram per kilogram' vs 'none' in 'ajmaline; liver' at '29 day'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from repeat dosing studies: compounds starting with A.
Adjusted p-valueLog2-fold change
2.2981 × 10-6-1.3
Bbs9'cisplatin; 3 milligram per kilogram' vs 'none' in 'cisplatin; liver' at '3 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with C.
Adjusted p-valueLog2-fold change
3.4084 × 10-4-1.3
Bbs9'monocrotaline; 30 milligram per kilogram' vs 'none' in 'monocrotaline; liver' at '9 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with J to M.
Adjusted p-valueLog2-fold change
3.3325 × 10-9-1.2
Bbs9'acetamidofluorene; 300 milligram per kilogram' vs 'none' in 'acetamidofluorene; liver' at '3 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with A.
Adjusted p-valueLog2-fold change
5.632 × 10-7-1.1
Bbs9'acetamidofluorene; 100 milligram per kilogram' vs 'none' in 'acetamidofluorene; liver' at '3 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with A.
Adjusted p-valueLog2-fold change
9.9033 × 10-6-1.1
Bbs9'24 hour culture at sarcomere length = 1.8 microns' vs 'control'stimulusRNA-Seq of rat myocardial slices cultured with biomimetic electromechanical stimulation
Adjusted p-valueLog2-fold change
7.9153 × 10-3-1.1
Bbs9'6 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
1.1529 × 10-2-1.1
Bbs9'bisphenol A; 10^-9 molar' at '7 day' vs 'control; 10^-9 molar' at '7 day'compound, timeAssessment of low-dose bisphenol A (BPA) toxicity in rat thyroid follicular cells by gene expression microarray
Adjusted p-valueLog2-fold change
5.1065 × 10-6-1
Bbs9'azoxymethane; 5 milligram per kilogram' vs 'saline' in 'proximal colon'compound, organism partGlobal gene expression of the colonic epithelium from proximal and distal sections of azoxymethane and saline-treated Sprague Dawley rats
Adjusted p-valueLog2-fold change
9.2321 × 10-5-1
Bbs9'lipopolysaccharide; 0.1 microgram per milliliter' vs 'none'compoundTranscription profiling by array of rat microglia treated with C6 glioma-conditioned medium or lipopolysaccharide
Adjusted p-valueLog2-fold change
1.6967 × 10-41
Bbs9"yellow onion extract vs saline digest control"treatmentEffects of digested onion extracts on intestinal gene expression using rat intestine slices
Adjusted p-valueLog2-fold change
2.7095 × 10-4-1
Bbs9'nitrosodiethylamine; 30 milligram per kilogram' vs 'none' in 'nitrosodiethylamine; liver' at '4 day'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from repeat dosing studies: compounds starting with N to O.
Adjusted p-valueLog2-fold change
9.5397 × 10-4-1
Bbs9'nitrosodiethylamine; 10 milligram per kilogram' vs 'none' in 'nitrosodiethylamine; liver' at '29 day'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from repeat dosing studies: compounds starting with N to O.
Adjusted p-valueLog2-fold change
1.8764 × 10-3-1
Bbs9'10 hour' vs '0 hour'timeTranscription profiling by array of Rattus norvegicus muscle samples in response to chronic dose of corticosteroids
Adjusted p-valueLog2-fold change
3.4968 × 10-3-1
Bbs9'neuromuscular junction' vs 'non-neuromuscular junction' in 'rectus extraocular muscle'organism part, sampling siteTranscription profiling by array of fiber and neuromuscular junctions in Rattus norvegicus extraocular and tibialis anterior muscles
Adjusted p-valueLog2-fold change
4.3689 × 10-3-1
Bbs9'cisplatin; 3 milligram per kilogram' vs 'none' in 'cisplatin; liver' at '24 hour'cohort, compound, organism part, timeTranscription profiling by array of rat liver and kidney after exposure to approximately 130 chemicals collected from single dose studies: compounds starting with C.
Synonym
LOC315484, RGD1308472
Ortholog
Gene ontology
InterPro
Ensembl gene
Ensembl transcript
Ensembl protein
Entrez
UniProt
Gene biotype
Design element
6711874, 6113996, 6698078, 5736146, 5909716, 6133772, A_44_P324034, 5705310, 6288148, 5871657, 5879506, 6022669, 6358432, 6527547, 5967236, 6502099, 6580501, rc_AI235250_at, 5990923, 1389434_at, 6348036, 10908617, A_42_P526728
Reactome pathway ID