S
IPR019824

Leghaemoglobin, iron-binding site

InterPro entry
Short nameLeghaemoglobin_Fe_BS

Description

This entry represents a conserved site found in leghaemoglobins from leguminous and non-leguminous plants, and also non-symbiotic haemoglobins from other plants. It is centred on a histidine that acts as the haem iron distal ligand.

Leghaemoglobins were first identified in the root nodules of leguminous plants, where they are crucial for supplying sufficient oxygen to root nodule bacteria for nitrogen fixation to occur
[15]
. Although leghaemoglobin and myoglobin both share a common fold, and both regulate the facilitated diffusion of oxygen, leghemoglobins regulate oxygen affinity through a mechanism different from that of myoglobin using a novel combination of haem pocket amino acids that lower the oxygen affinity
[16, 17]
. In non-leguminous plants, leghaemoglobins play a role in the respiratory metabolism of root cells. The structure of leghaemoglobins is similar to that of haemoglobins and myoglobins, although there is little sequence conservation. The proteins are largely α-helical, eight helices providing the scaffold for a well-defined haem-binding pocket. By contrast with the tetrameric mammalian globin assembly, the plant form is monomeric.

Non-symbiotic haemoglobins (NsHb) play important roles in a variety of cellular processes. A class I NsHb from cotton plants can be induced in plant roots as a defence mechanism against pathogen invasion, possibly by modulating nitric oxide (NO) levels
[18]
. Several NsHbs appear to play a role NO scavenging in plants, indicating that the primordial function of haemoglobins may well be to protect against nitrosative stress and to modulate NO signalling functions
[19]
.

Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms
[3]
. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors
[4]
. Several functionally different haemoglobins can coexist in the same species. The major types of globins include:


 * Haemoglobin (Hb): tetramer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates
[5]
. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors
[6]
.
 * Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle
[7]
.
 * Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia
[8]
. Neuroglobin belongs to a branch of the globin family that diverged early in evolution.
 * Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin
[9]
.
 * Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers
[10]
.
 * Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation.
 * Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants
[1]
.
 * Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin
[11]
.
 * Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression
[12, 13]
.
 * Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors
[14]
.
 * Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 α-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features
[2]
.
 * Anaerobic nitrite reductase: phytoglobin that reduces nitrite to nitric oxide (NO) under anoxic conditions
[20]
.

References

1.Plant hemoglobins: what we know six decades after their discovery. Garrocho-Villegas V, Gopalasubramaniam SK, Arredondo-Peter R. Gene 398, 78-85, (2007). View articlePMID: 17540516

2.Protein structure in the truncated (2/2) hemoglobin family. Pesce A, Nardini M, Milani M, Bolognesi M. IUBMB Life 59, 535-41, (2007). View articlePMID: 17701548

3.A model of globin evolution. Vinogradov SN, Hoogewijs D, Bailly X, Mizuguchi K, Dewilde S, Moens L, Vanfleteren JR. Gene 398, 132-42, (2007). View articlePMID: 17540514

4.A phylogenomic profile of globins. Vinogradov SN, Hoogewijs D, Bailly X, Arredondo-Peter R, Gough J, Dewilde S, Moens L, Vanfleteren JR. BMC Evol. Biol. 6, 31, (2006). View articlePMID: 16600051

5.Sequential analysis of alpha- and beta-globin gene expression during erythropoietic differentiation from primate embryonic stem cells. Umeda K, Heike T, Nakata-Hizume M, Niwa A, Arai M, Shinoda G, Ma F, Suemori H, Luo HY, Chui DH, Torii R, Shibuya M, Nakatsuji N, Nakahata T. Stem Cells 24, 2627-36, (2006). View articlePMID: 16888280

6.Structural and functional properties of hemoglobins from unicellular organisms as revealed by resonance Raman spectroscopy. Egawa T, Yeh SR. J. Inorg. Biochem. 99, 72-96, (2005). View articlePMID: 15598493

7.Myoglobin: an essential hemoprotein in striated muscle. Ordway GA, Garry DJ. J. Exp. Biol. 207, 3441-6, (2004). View articlePMID: 15339940

8.Human brain neuroglobin structure reveals a distinct mode of controlling oxygen affinity. Pesce A, Dewilde S, Nardini M, Moens L, Ascenzi P, Hankeln T, Burmester T, Bolognesi M. Structure 11, 1087-95, (2003). View articlePMID: 12962627

9.Functional properties of neuroglobin and cytoglobin. Insights into the ancestral physiological roles of globins. Fago A, Hundahl C, Malte H, Weber RE. IUBMB Life 56, 689-96, (2004). PMID: 15804833

10.Low resolution crystal structure of Arenicola erythrocruorin: influence of coiled coils on the architecture of a megadalton respiratory protein. Royer WE Jr, Omartian MN, Knapp JE. J. Mol. Biol. 365, 226-36, (2007). View articlePMID: 17084861

11.Flavohemoglobin, a globin with a peroxidase-like catalytic site. Mukai M, Mills CE, Poole RK, Yeh SR. J. Biol. Chem. 276, 7272-7, (2001). View articlePMID: 11092893

12.Globin-coupled sensors: a class of heme-containing sensors in Archaea and Bacteria. Hou S, Freitas T, Larsen RW, Piatibratov M, Sivozhelezov V, Yamamoto A, Meleshkevitch EA, Zimmer M, Ordal GW, Alam M. Proc. Natl. Acad. Sci. U.S.A. 98, 9353-8, (2001). View articlePMID: 11481493

13.Globin-coupled sensors, protoglobins, and the last universal common ancestor. Freitas TA, Saito JA, Hou S, Alam M. J. Inorg. Biochem. 99, 23-33, (2005). View articlePMID: 15598488

14.Ancestral hemoglobins in Archaea. Freitas TA, Hou S, Dioum EM, Saito JA, Newhouse J, Gonzalez G, Gilles-Gonzalez MA, Alam M. Proc. Natl. Acad. Sci. U.S.A. 101, 6675-80, (2004). View articlePMID: 15096613

15.Legume haemoglobins: symbiotic nitrogen fixation needs bloody nodules. Downie JA. Curr. Biol. 15, R196-8, (2005). View articlePMID: 15797009

16.Plants, humans and hemoglobins. Kundu S, Trent JT 3rd, Hargrove MS. Trends Plant Sci. 8, 387-93, (2003). View articlePMID: 12927972

17.The leghemoglobin proximal heme pocket directs oxygen dissociation and stabilizes bound heme. Kundu S, Snyder B, Das K, Chowdhury P, Park J, Petrich JW, Hargrove MS. Proteins 46, 268-77, (2002). View articlePMID: 11835502

18.[Study on the serum concentrations of gentamicin after intravenous drip infusion] Shiramatsu K, Ishida K, Takahashi K, Kunimoto M, Denno R, Akiyama M, Hirata K, Hayasaka H. 36, 293-8, (1983). PMID: 6854938

19.Modulation of nitric oxide bioactivity by plant haemoglobins. Perazzolli M, Romero-Puertas MC, Delledonne M. J. Exp. Bot. 57, 479-88, (2006). View articlePMID: 16377734

20.Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions. Sturms R, DiSpirito AA, Hargrove MS. Biochemistry 50, 3873-8, (2011). View articlePMID: 21495624

GO terms

biological process

  • None

cellular component

  • None

Cross References

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