3j78

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

PDB structure
Accession
3j78
Experiment typeCryo-EM
Resolution6.3 Å
Chains10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, L1, L2, L3, L4, L5, L6, L7, L8, L9, P0, RC, S0, S1, S2, S3, S4, S5, S6, S7, S8, S9
Released6 August 2014

Chain 10 ( Q08745)

Domains in the chain
1105102030405060708090100
50100MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQRPQRRY

Chain 11 ( P0CX47)

Domains in the chain
115620406080100120140
50100150

Chain 12 ( P48589)

Domains in the chain
114320406080100120140
50100
Riboso…Ribosomal_…Ribosomal_eS12Riboso…

Chain 13 ( P05756)

Domains in the chain
115120406080100120140
50100150

Chain 14 ( P06367)

Domains in the chain
1137102030405060708090100110120130
50100

Chain 15 ( Q01855)

Domains in the chain

Chain 16 ( P0CX51)

Domains in the chain
114320406080100120140
50100

Chain 17 ( P02407)

Domains in the chain
1136102030405060708090100110120130
50100

Chain 18 ( P0CX55)

Domains in the chain
114620406080100120140
50100

Chain 19 ( P07280)

Domains in the chain
114420406080100120140
50100

Chain 20 ( P38701)

Domains in the chain

Chain 21 ( P0C0V8)

Domains in the chain
1871020304050607080
20406080MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGESDDSLNRLAQNDGLLKNVWSYSR

Chain 22 ( P0C0W1)

Domains in the chain
1130102030405060708090100110120130
50100

Chain 23 ( P0CX29)

Domains in the chain

Chain 24 ( P0CX31)

Domains in the chain
1135102030405060708090100110120130
50100

Chain 25 ( Q3E792)

Domains in the chain
1108102030405060708090100
50100MPPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRATASE

Chain 26 ( P39938)

Domains in the chain
1119102030405060708090100110
50100

Chain 27 ( P35997)

Domains in the chain
1821020304050607080
20406080MVLVQDLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK

Chain 28 ( Q3E7X9)

Domains in the chain
1675101520253035404550556065
204060MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESEREARRLR

Chain 29 ( P41057)

Domains in the chain
156510152025303540455055
2040MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR

Chain 31 ( P05759)

Domains in the chain

Chain 60 ( P41805)

Domains in the chain
122120406080100120140160180200220
100200

Chain 61 ( P0C0W9)

Domains in the chain
117420406080100120140160
50100150

Chain 62 ( P0CX53)

Domains in the chain
116520406080100120140160
50100150

Chain 63 ( Q12690)

Domains in the chain
119920406080100120140160180
50100150200

Chain 64 ( P36105)

Domains in the chain
1138102030405060708090100110120130
50100
KOW_RPL14
Representative domains
KOW
Ribosomal_eL14_dom

Chain 65 ( P05748)

Domains in the chain
120420406080100120140160180200
50100150200

Chain 66 ( P26784)

Domains in the chain

Chain 67 ( P05740)

Domains in the chain

Chain 68 ( P0CX49)

Domains in the chain
118620406080100120140160180
50100150

Chain 69 ( P0CX82)

Domains in the chain
118920406080100120140160180
50100150
Ribosomal_L19e_E
Representative domains
Ribosomal_eL19_dom

Chain 70 ( P0CX23)

Domains in the chain
117220406080100120140160
50100150

Chain 71 ( Q02753)

Domains in the chain
116020406080100120140160
50100150

Chain 72 ( P05749)

Domains in the chain
1121102030405060708090100110120
50100

Chain 73 ( P0CX41)

Domains in the chain
1137102030405060708090100110120130
50100

Chain 74 ( P04449)

Domains in the chain
115520406080100120140
50100150

Chain 75 ( P04456)

Domains in the chain
1142102030405060708090100110120130140
50100

Chain 76 ( P05743)

Domains in the chain
1127102030405060708090100110120
50100
KOW_RPL26
Representative domains
KOW

Chain 77 ( P0C2H6)

Domains in the chain
1136102030405060708090100110120130
50100

Chain 78 ( P02406)

Domains in the chain
114920406080100120140
50100150

Chain 79 ( P05747)

Domains in the chain
159510152025303540455055
204060MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHALHGTAKALAAAKK

Chain 80 ( P14120)

Domains in the chain
1105102030405060708090100
50100MAPVKSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA

Chain 81 ( P0C2H8)

Domains in the chain
1113102030405060708090100110
50100MAGLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVASAKGLQTVVVEEDA

Chain 82 ( P38061)

Domains in the chain
1130102030405060708090100110120130
50100

Chain 83 ( P05744)

Domains in the chain
1107102030405060708090100
50100MAESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI

Chain 84 ( P87262)

Domains in the chain
1121102030405060708090100110120
50100

Chain 85 ( P0CX84)

Domains in the chain
1120102030405060708090100110120
50100

Chain 86 ( P05745)

Domains in the chain
1100102030405060708090100
50100MTVKTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASRRH

Chain 87 ( P49166)

Domains in the chain
1881020304050607080
20406080MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSASKASA

Chain 88 ( P49167)

Domains in the chain
17810203040506070
204060MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLPPTLKVNRL

Chain 89 ( P04650)

Domains in the chain
1515101520253035404550
2040MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI

Chain 90 ( P0CH08)

Domains in the chain

Chain 92 ( P0CX27)

Domains in the chain
1106102030405060708090100
50100MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF

Chain 93 ( P0CX25)

Domains in the chain
192102030405060708090
20406080MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA

Chain L1 ( P0CX43)

Domains in the chain
121720406080100120140160180200
100200

Chain L2 ( P0CX45)

Domains in the chain
125420406080100120140160180200220240
100200

Chain L3 ( P14126)

Domains in the chain
138750100150200250300350
100200300

Chain L4 ( P10664)

Domains in the chain
136250100150200250300350
100200300

Chain L5 ( P26321)

Domains in the chain
129720406080100120140160180200220240260280
100200
Ribosomal_L18_L5e
Representative domains
Ribosomal_L18_L5e

Chain L6 ( Q02326)

Domains in the chain
117620406080100120140160
50100150

Chain L8 ( P17076)

Domains in the chain
125620406080100120140160180200220240
100200
Ribo…Ribo…Ribos…Ri…Riboso…Ribosom…Riboso…

Chain L9 ( P05738)

Domains in the chain
119120406080100120140160180
50100150

Chain P0 ( P05317)

Domains in the chain
131220406080100120140160180200220240260280300
100200300
Ribosomal_P0_L10e
Representative domains
Ribosomal_P0_L10e

Chain RC ( P38011)

Domains in the chain
131950100150200250300
100200300
WD40
Representative domains
WD40
Unintegrated

Chain S0 ( P32905)

Domains in the chain

Chain S1 ( P33442)

Domains in the chain
125520406080100120140160180200220240
100200

Chain S2 ( P25443)

Domains in the chain

Chain S3 ( P05750)

Domains in the chain

Chain S4 ( P0CX35)

Domains in the chain
126120406080100120140160180200220240260
100200
S4KOW_RPS4
Representative domains
S4_RNA-bd
S4
Unintegrated
KOW

Chain S5 ( P26783)

Domains in the chain

Chain S6 ( P0CX37)

Domains in the chain
123620406080100120140160180200220
100200

Chain S7 ( P26786)

Domains in the chain
119020406080100120140160180
50100150

Chain S8 ( P0CX39)

Domains in the chain
120020406080100120140160180200
50100150200
Ribosomal_S8e_like
Representative domains
Ribosomal_S8e_like

Chain S9 ( O13516)

Domains in the chain

References

1. Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A. Structure 22, 1210-1218, (2014). View articlePMID: 25043550

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