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Interfaces in PDB 1rf1 crystal.
Space symmetry group: P 21 21 21. Resolution: 2.53 Å

CRYSTAL STRUCTURE OF FRAGMENT D OF GAMMAE132A FIBRINOGEN WITH THE PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE

Interfaces

##			Structure 1				×	Structure 2						interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
Id	NN	«»	Range	ⁱN_at	ⁱN_res	Surface Å²	×	Range	Symmetry op-n	Sym.ID	ⁱN_at	ⁱN_res	Surface Å²	interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
1	`1`		C	`198`	`59`	`15550`	`◊`	B	x,y,z	`1_555`	`211`	`55`	`15598`	`1978.0`	`-24.1`	`0.087`	`23`	`5`	`1`	`0.767`
	`2`		F	`172`	`51`	`14885`	`◊`	E	x,y,z	`1_555`	`209`	`54`	`15275`	`1819.0`	`-22.0`	`0.077`	`24`	`4`	`1`	`0.767`
	*Average:*													`1898.5`	`-23.0`	`0.082`	`24`	`5`	`1`	`0.767`
2	`3`		B	`171`	`40`	`15598`	`◊`	A	x,y,z	`1_555`	`173`	`43`	`5580`	`1695.3`	`-20.6`	`0.119`	`21`	`11`	`1`	`0.991`
	`4`		E	`157`	`39`	`15275`	`◊`	D	x,y,z	`1_555`	`161`	`41`	`4949`	`1559.4`	`-16.8`	`0.143`	`19`	`11`	`1`	`0.991`
	*Average:*													`1627.4`	`-18.7`	`0.131`	`20`	`11`	`1`	`0.991`
3	`5`		C	`74`	`22`	`15550`	`◊`	A	x,y,z	`1_555`	`73`	`23`	`5580`	`765.5`	`-14.1`	`0.031`	`12`	`3`	`1`	`0.674`
	`6`		F	`65`	`19`	`14885`	`◊`	D	x,y,z	`1_555`	`66`	`19`	`4949`	`659.5`	`-14.5`	`0.020`	`11`	`1`	`1`	`0.674`
	*Average:*													`712.5`	`-14.3`	`0.025`	`12`	`2`	`1`	`0.674`
4	`7`		G	`30`	`4`	`631`	`◊`	C	x,y,z	`1_555`	`52`	`15`	`15550`	`387.4`	`-2.6`	`0.462`	`8`	`6`	`0`	`0.380`
	`8`		I	`28`	`4`	`641`	`◊`	F	x,y,z	`1_555`	`44`	`15`	`14885`	`376.8`	`1.1`	`0.677`	`8`	`7`	`0`	`0.380`
	*Average:*													`382.1`	`-0.7`	`0.570`	`8`	`7`	`0`	`0.380`
5	`9`		C	`44`	`14`	`15550`	`◊`	F	x-1/2,-y+1/2,-z+1	`4_456`	`48`	`15`	`14885`	`338.6`	`-6.0`	`0.238`	`0`	`0`	`0`	`0.000`
6	`10`		H	`27`	`4`	`650`	`◊`	B	x,y,z	`1_555`	`39`	`14`	`15598`	`323.3`	`-0.5`	`0.519`	`10`	`7`	`0`	`0.921`
	`11`		J	`25`	`4`	`649`	`◊`	E	x,y,z	`1_555`	`41`	`14`	`15275`	`317.5`	`-1.1`	`0.481`	`11`	`6`	`0`	`0.921`
	*Average:*													`320.4`	`-0.8`	`0.500`	`11`	`7`	`0`	`0.921`
7	`12`		E	`27`	`10`	`15275`	`◊`	B	-x+1,y-1/2,-z+1/2	`3_645`	`33`	`13`	`15598`	`264.5`	`2.2`	`0.777`	`6`	`1`	`0`	`0.000`
	`13`		B	`27`	`8`	`15598`	`◊`	E	-x+1,y-1/2,-z+1/2	`3_645`	`32`	`11`	`15275`	`253.9`	`2.0`	`0.759`	`5`	`2`	`0`	`0.000`
	*Average:*													`259.2`	`2.1`	`0.768`	`6`	`2`	`0`	`0.000`
8	`14`		D	`13`	`4`	`4949`	`◊`	B	-x+1,y-1/2,-z+1/2	`3_645`	`19`	`8`	`15598`	`171.2`	`0.8`	`0.667`	`3`	`0`	`0`	`0.000`
	`15`		A	`15`	`4`	`5580`	`◊`	E	-x+1,y-1/2,-z+1/2	`3_645`	`20`	`8`	`15275`	`168.5`	`0.4`	`0.662`	`3`	`0`	`0`	`0.000`
	*Average:*													`169.8`	`0.6`	`0.664`	`3`	`0`	`0`	`0.000`
9	`16`		C	`15`	`5`	`15550`	`x`	C	-x+1/2,-y,z-1/2	`2_554`	`22`	`7`	`15550`	`166.4`	`-2.8`	`0.171`	`1`	`0`	`0`	`0.000`
10	`17`		F	`18`	`7`	`14885`	`◊`	E	x-1/2,-y+1/2,-z+1	`4_456`	`19`	`6`	`15275`	`165.1`	`-1.7`	`0.405`	`1`	`0`	`0`	`0.000`
11	`18`		C	`15`	`3`	`15550`	`◊`	F	-x+1,y-1/2,-z+1/2	`3_645`	`17`	`8`	`14885`	`144.2`	`-2.4`	`0.302`	`0`	`0`	`0`	`0.000`
	`19`		F	`3`	`2`	`14885`	`◊`	C	-x+1,y-1/2,-z+1/2	`3_645`	`1`	`1`	`15550`	`12.3`	`-0.1`	`0.372`	`0`	`0`	`0`	`0.000`
	*Average:*													`78.3`	`-1.2`	`0.337`	`0`	`0`	`0`	`0.000`
12	`20`		[NAG]E:3	`7`	`1`	`360`	`cf`	E	x,y,z	`1_555`	`13`	`4`	`15275`	`86.7`	`2.6`	`0.530`	`0`	`0`	`0`	`0.000`
13	`21`		[NAG]B:3	`7`	`1`	`355`	`cf`	B	x,y,z	`1_555`	`9`	`3`	`15598`	`80.7`	`2.9`	`0.573`	`0`	`0`	`0`	`0.000`
14	`22`		[FUC]B:5	`7`	`1`	`283`	`cf`	[NAG]B:3	x,y,z	`1_555`	`10`	`1`	`355`	`79.1`	`3.6`	`0.146`	`0`	`0`	`0`	`0.000`
15	`23`		[NAG]E:4	`8`	`1`	`351`	`cf`	[NAG]E:3	x,y,z	`1_555`	`7`	`1`	`360`	`78.2`	`2.2`	`0.123`	`1`	`0`	`0`	`0.000`
16	`24`		E	`16`	`7`	`15275`	`◊`	F	x-1/2,-y+1/2,-z+1	`4_456`	`8`	`5`	`14885`	`70.9`	`0.7`	`0.750`	`1`	`2`	`0`	`0.000`
17	`25`		[NAG]B:4	`7`	`1`	`348`	`cf`	[NAG]B:3	x,y,z	`1_555`	`8`	`1`	`355`	`70.2`	`1.8`	`0.086`	`1`	`0`	`0`	`0.000`
18	`26`		[FUC]E:5	`7`	`1`	`281`	`cf`	[NAG]E:3	x,y,z	`1_555`	`6`	`1`	`360`	`70.2`	`3.0`	`0.199`	`0`	`0`	`0`	`0.000`
19	`27`		B	`8`	`3`	`15598`	`◊`	F	-x+1,y-1/2,-z+1/2	`3_645`	`8`	`3`	`14885`	`62.1`	`0.7`	`0.666`	`0`	`0`	`0`	`0.000`
	`28`		E	`8`	`3`	`15275`	`◊`	C	-x+1,y-1/2,-z+1/2	`3_645`	`5`	`2`	`15550`	`50.0`	`0.7`	`0.772`	`1`	`0`	`0`	`0.000`
	*Average:*													`56.1`	`0.7`	`0.719`	`1`	`0`	`0`	`0.000`
20	`29`		[NAG]B:3	`5`	`1`	`355`	`◊`	H	x,y,z	`1_555`	`7`	`2`	`650`	`61.8`	`0.4`	`0.272`	`1`	`0`	`0`	`0.004`
21	`30`		[NAG]E:3	`5`	`1`	`360`	`◊`	J	x,y,z	`1_555`	`6`	`2`	`649`	`58.1`	`0.0`	`0.234`	`1`	`0`	`0`	`0.049`
22	`31`		[FUC]E:5	`5`	`1`	`281`	`◊`	J	x,y,z	`1_555`	`5`	`2`	`649`	`54.8`	`-0.1`	`0.217`	`0`	`0`	`0`	`0.033`
	`32`		[FUC]B:5	`4`	`1`	`283`	`◊`	H	x,y,z	`1_555`	`5`	`2`	`650`	`44.1`	`-0.2`	`0.250`	`0`	`0`	`0`	`0.033`
	*Average:*													`49.4`	`-0.1`	`0.234`	`0`	`0`	`0`	`0.033`
23	`33`		[FUC]E:5	`6`	`1`	`281`	`f`	[NAG]E:4	x,y,z	`1_555`	`7`	`1`	`351`	`48.4`	`2.1`	`0.138`	`1`	`0`	`0`	`0.000`
24	`34`		[CA]E:462	`1`	`1`	`85`	`f`	E	x,y,z	`1_555`	`10`	`6`	`15275`	`47.5`	`-11.3`	`0.000`	`0`	`0`	`0`	`1.000`
	`35`		[CA]B:462	`1`	`1`	`85`	`f`	B	x,y,z	`1_555`	`10`	`6`	`15598`	`46.8`	`-11.5`	`0.000`	`0`	`0`	`0`	`1.000`
	*Average:*													`47.1`	`-11.4`	`0.000`	`0`	`0`	`0`	`1.000`
25	`36`		[FUC]B:5	`7`	`1`	`283`	`f`	[NAG]B:4	x,y,z	`1_555`	`6`	`1`	`348`	`46.0`	`2.2`	`0.151`	`0`	`0`	`0`	`0.000`
26	`37`		[CA]F:407	`1`	`1`	`85`	`f`	F	x,y,z	`1_555`	`7`	`4`	`14885`	`44.0`	`-11.8`	`0.000`	`0`	`0`	`0`	`0.620`
	`38`		[CA]C:407	`1`	`1`	`85`	`f`	C	x,y,z	`1_555`	`8`	`5`	`15550`	`43.5`	`-11.6`	`0.000`	`0`	`0`	`0`	`0.620`
	*Average:*													`43.7`	`-11.7`	`0.000`	`0`	`0`	`0`	`0.620`
27	`39`		[FUC]E:5	`4`	`1`	`281`	`f`	E	x,y,z	`1_555`	`2`	`2`	`15275`	`36.8`	`1.1`	`0.460`	`0`	`0`	`0`	`0.000`
	`40`		[FUC]B:5	`3`	`1`	`283`	`f`	B	x,y,z	`1_555`	`3`	`2`	`15598`	`35.5`	`1.1`	`0.621`	`0`	`0`	`0`	`0.000`
	*Average:*													`36.2`	`1.1`	`0.540`	`0`	`0`	`0`	`0.000`
28	`41`		E	`4`	`2`	`15275`	`◊`	I	x-1/2,-y+1/2,-z+1	`4_456`	`4`	`1`	`641`	`29.9`	`-0.0`	`0.493`	`0`	`0`	`0`	`0.000`
29	`42`		B	`3`	`1`	`15598`	`◊`	F	-x+3/2,-y,z-1/2	`2_654`	`2`	`1`	`14885`	`28.5`	`-0.1`	`0.372`	`0`	`0`	`0`	`0.000`
30	`43`		A	`2`	`1`	`5580`	`◊`	B	x-1/2,-y+1/2,-z	`4_455`	`4`	`3`	`15598`	`25.3`	`0.0`	`0.584`	`0`	`0`	`0`	`0.000`
31	`44`		[NAG]E:4	`2`	`1`	`351`	`◊`	J	x,y,z	`1_555`	`2`	`1`	`649`	`18.3`	`-0.3`	`0.287`	`0`	`0`	`0`	`0.031`
32	`45`		G	`1`	`1`	`631`	`◊`	F	x,y,z	`1_555`	`1`	`1`	`14885`	`2.9`	`0.1`	`0.724`	`0`	`0`	`0`	`0.000`
33	`46`		[NAG]B:4	`1`	`1`	`348`	`◊`	H	x,y,z	`1_555`	`1`	`1`	`650`	`1.6`	`0.0`	`0.296`	`0`	`0`	`0`	`0.000`
34	`47`		C	`1`	`1`	`15550`	`◊`	B	x-1/2,-y+1/2,-z	`4_455`	`1`	`1`	`15598`	`0.3`	`-0.0`	`0.633`	`0`	`0`	`0`	`0.000`

PDBe PISA v1.52 [20/10/2014]

Protein Data Bank
in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank
in Europe