PDBe < PISA < EMBL-EBI

PISA Interface List.

Session Map (id=426-D3-38I)

Interfaces in PDB 1rvc crystal.
Space symmetry group: P 1. Resolution: 2.10 Å

MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Interfaces

##			Structure 1				×	Structure 2						interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
Id	NN	«»	Range	ⁱN_at	ⁱN_res	Surface Å²	×	Range	Symmetry op-n	Sym.ID	ⁱN_at	ⁱN_res	Surface Å²	interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
1	`1`		B	`200`	`52`	`13759`	`◊`	A	x,y,z	`1_555`	`216`	`55`	`13596`	`2075.9`	`-20.3`	`0.025`	`33`	`8`	`0`	`0.742`
2	`2`		F	`38`	`5`	`1407`	`◊`	B	x,y,z	`1_555`	`57`	`23`	`13759`	`437.4`	`-7.9`	`0.440`	`8`	`0`	`0`	`0.408`
3	`3`		D	`37`	`5`	`1406`	`◊`	A	x,y,z	`1_555`	`56`	`23`	`13596`	`430.4`	`-7.5`	`0.441`	`8`	`0`	`0`	`0.399`
4	`4`		B	`40`	`9`	`13759`	`◊`	A	x-1,y-1,z-1	`1_444`	`38`	`13`	`13596`	`355.9`	`-2.3`	`0.336`	`6`	`1`	`0`	`0.000`
5	`5`		C	`34`	`6`	`1492`	`◊`	B	x,y,z	`1_555`	`39`	`15`	`13759`	`321.0`	`-2.4`	`0.437`	`8`	`0`	`0`	`0.182`
	`6`		E	`34`	`6`	`1483`	`◊`	A	x,y,z	`1_555`	`38`	`15`	`13596`	`313.9`	`-3.1`	`0.391`	`9`	`0`	`0`	`0.182`
	*Average:*													`317.4`	`-2.8`	`0.414`	`9`	`0`	`0`	`0.182`
6	`7`		C	`36`	`3`	`1492`	`◊`	A	x,y,z	`1_555`	`37`	`17`	`13596`	`297.1`	`-2.9`	`0.407`	`4`	`0`	`0`	`0.169`
	`8`		E	`29`	`3`	`1483`	`◊`	B	x,y,z	`1_555`	`40`	`17`	`13759`	`280.6`	`-3.1`	`0.370`	`4`	`0`	`0`	`0.169`
	*Average:*													`288.9`	`-3.0`	`0.389`	`4`	`0`	`0`	`0.169`
7	`9`		B	`35`	`11`	`13759`	`◊`	A	x,y,z-1	`1_554`	`34`	`11`	`13596`	`293.6`	`-4.0`	`0.176`	`2`	`0`	`0`	`0.000`
8	`10`		A	`29`	`11`	`13596`	`◊`	B	x-1,y,z	`1_455`	`24`	`9`	`13759`	`235.9`	`2.1`	`0.766`	`5`	`2`	`0`	`0.000`
9	`11`		D	`32`	`5`	`1406`	`◊`	E	x,y,z	`1_555`	`21`	`6`	`1483`	`234.9`	`-3.2`	`0.633`	`9`	`0`	`0`	`0.647`
	`12`		F	`29`	`5`	`1407`	`◊`	C	x,y,z	`1_555`	`21`	`6`	`1492`	`232.9`	`-3.1`	`0.615`	`10`	`0`	`0`	`0.647`
	*Average:*													`233.9`	`-3.2`	`0.624`	`10`	`0`	`0`	`0.647`
10	`13`		D	`31`	`5`	`1406`	`◊`	B	x,y,z	`1_555`	`24`	`7`	`13759`	`218.9`	`-3.3`	`0.606`	`5`	`0`	`0`	`0.189`
11	`14`		F	`25`	`4`	`1407`	`◊`	A	x,y,z	`1_555`	`24`	`7`	`13596`	`209.6`	`-1.6`	`0.649`	`5`	`0`	`0`	`0.140`
12	`15`		E	`24`	`4`	`1483`	`◊`	B	x-1,y,z	`1_455`	`24`	`10`	`13759`	`196.9`	`0.9`	`0.583`	`1`	`0`	`0`	`0.000`
13	`16`		B	`24`	`10`	`13759`	`◊`	A	x-1,y,z-1	`1_454`	`26`	`7`	`13596`	`185.8`	`0.4`	`0.599`	`1`	`0`	`0`	`0.000`
14	`17`		A	`17`	`5`	`13596`	`x`	A	x-1,y,z	`1_455`	`15`	`5`	`13596`	`123.7`	`-1.4`	`0.270`	`0`	`0`	`0`	`0.000`
15	`18`		D	`13`	`1`	`1406`	`◊`	B	x-1,y,z	`1_455`	`12`	`4`	`13759`	`99.4`	`1.2`	`0.797`	`1`	`0`	`0`	`0.000`
16	`19`		A	`11`	`4`	`13596`	`x`	A	x-1,y-1,z	`1_445`	`13`	`3`	`13596`	`93.3`	`-1.3`	`0.281`	`0`	`0`	`0`	`0.000`
17	`20`		D	`11`	`2`	`1406`	`◊`	C	x,y,z	`1_555`	`12`	`1`	`1492`	`80.8`	`-0.4`	`0.591`	`2`	`0`	`0`	`0.017`
	`21`		F	`12`	`2`	`1407`	`◊`	E	x,y,z	`1_555`	`12`	`1`	`1483`	`80.5`	`-0.3`	`0.603`	`2`	`0`	`0`	`0.017`
	*Average:*													`80.6`	`-0.4`	`0.597`	`2`	`0`	`0`	`0.017`
18	`22`		B	`5`	`1`	`13759`	`◊`	A	x-1,y-1,z	`1_445`	`11`	`5`	`13596`	`67.1`	`1.4`	`0.810`	`1`	`0`	`0`	`0.000`
19	`23`		F	`12`	`1`	`1407`	`◊`	D	x,y,z	`1_555`	`11`	`1`	`1406`	`61.1`	`2.8`	`0.921`	`0`	`0`	`0`	`0.000`
20	`24`		[MG]A:401	`1`	`1`	`98`	`f`	A	x,y,z	`1_555`	`9`	`5`	`13596`	`40.0`	`-5.2`	`0.000`	`0`	`0`	`0`	`0.219`
	`25`		[MG]B:403	`1`	`1`	`98`	`f`	B	x,y,z	`1_555`	`8`	`4`	`13759`	`39.7`	`-5.5`	`0.000`	`0`	`0`	`0`	`0.219`
	*Average:*													`39.9`	`-5.3`	`0.000`	`0`	`0`	`0`	`0.219`
21	`26`		C	`7`	`2`	`1492`	`◊`	A	x-1,y-1,z	`1_445`	`3`	`2`	`13596`	`35.2`	`-1.2`	`0.422`	`1`	`0`	`0`	`0.000`
22	`27`		[MG]D:402	`1`	`1`	`98`	`◊`	A	x,y,z	`1_555`	`8`	`4`	`13596`	`33.9`	`-3.5`	`0.000`	`0`	`0`	`0`	`0.125`
	`28`		[MG]F:404	`1`	`1`	`98`	`◊`	B	x,y,z	`1_555`	`5`	`3`	`13759`	`29.3`	`-3.0`	`0.000`	`0`	`0`	`0`	`0.125`
	*Average:*													`31.6`	`-3.2`	`0.000`	`0`	`0`	`0`	`0.125`
23	`29`		B	`3`	`1`	`13759`	`x`	B	x-1,y-1,z	`1_445`	`2`	`1`	`13759`	`30.4`	`0.4`	`0.746`	`0`	`1`	`0`	`0.000`
24	`30`		[MG]F:404	`1`	`1`	`98`	`f`	F	x,y,z	`1_555`	`4`	`1`	`1407`	`26.7`	`-4.1`	`0.000`	`0`	`0`	`0`	`0.358`
	`31`		[MG]D:402	`1`	`1`	`98`	`f`	D	x,y,z	`1_555`	`3`	`1`	`1406`	`26.3`	`-4.0`	`0.000`	`0`	`0`	`0`	`0.358`
	*Average:*													`26.5`	`-4.1`	`0.000`	`0`	`0`	`0`	`0.358`
25	`32`		[MG]A:401	`1`	`1`	`98`	`◊`	D	x,y,z	`1_555`	`5`	`1`	`1406`	`26.3`	`-4.0`	`0.000`	`0`	`0`	`0`	`0.143`
	`33`		[MG]B:403	`1`	`1`	`98`	`◊`	F	x,y,z	`1_555`	`5`	`1`	`1407`	`25.9`	`-4.0`	`0.000`	`0`	`0`	`0`	`0.143`
	*Average:*													`26.1`	`-4.0`	`0.000`	`0`	`0`	`0`	`0.143`
26	`34`		[MG]D:402	`1`	`1`	`98`	`◊`	B	x,y,z	`1_555`	`6`	`2`	`13759`	`21.8`	`-2.1`	`0.000`	`0`	`0`	`0`	`0.073`
	`35`		[MG]F:404	`1`	`1`	`98`	`◊`	A	x,y,z	`1_555`	`6`	`2`	`13596`	`21.4`	`-2.0`	`0.000`	`0`	`0`	`0`	`0.073`
	*Average:*													`21.6`	`-2.0`	`0.000`	`0`	`0`	`0`	`0.073`
27	`36`		[MG]F:404	`1`	`1`	`98`	`◊`	E	x,y,z	`1_555`	`5`	`1`	`1483`	`15.4`	`-1.1`	`0.000`	`0`	`0`	`0`	`0.013`
	`37`		[MG]D:402	`1`	`1`	`98`	`◊`	C	x,y,z	`1_555`	`4`	`1`	`1492`	`12.7`	`-0.9`	`0.000`	`0`	`0`	`0`	`0.013`
	*Average:*													`14.0`	`-1.0`	`0.000`	`0`	`0`	`0`	`0.013`
28	`38`		[MG]A:401	`1`	`1`	`98`	`◊`	B	x,y,z	`1_555`	`2`	`1`	`13759`	`14.7`	`-0.9`	`0.000`	`0`	`0`	`0`	`0.038`
	`39`		[MG]B:403	`1`	`1`	`98`	`◊`	A	x,y,z	`1_555`	`2`	`1`	`13596`	`13.7`	`-0.9`	`0.000`	`0`	`0`	`0`	`0.038`
	*Average:*													`14.2`	`-0.9`	`0.000`	`0`	`0`	`0`	`0.038`
29	`40`		D	`3`	`1`	`1406`	`◊`	A	x-1,y,z	`1_455`	`1`	`1`	`13596`	`5.9`	`-0.0`	`0.413`	`0`	`0`	`0`	`0.000`
30	`41`		E	`1`	`1`	`1483`	`◊`	C	x,y,z	`1_555`	`1`	`1`	`1492`	`5.6`	`-0.6`	`0.147`	`0`	`0`	`0`	`0.009`
31	`42`		A	`1`	`1`	`13596`	`x`	A	x,y-1,z	`1_545`	`1`	`1`	`13596`	`0.8`	`0.0`	`0.700`	`0`	`0`	`0`	`0.000`

PDBe PISA v1.52 [20/10/2014]

Protein Data Bank
in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank
in Europe