PDBe < PISA < EMBL-EBI

PISA Interface List.

Session Map (id=814-98-N22)

Interfaces in PDB 4yfk crystal.
Space symmetry group: P 21 21 21. Resolution: 3.57 Å

ESCHERICHIA COLI RNA POLYMERASE IN COMPLEX WITH SQUARAMIDE COMPOUND 8.

Interfaces

##			Structure 1				×	Structure 2						interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
Id	NN	«»	Range	ⁱN_at	ⁱN_res	Surface Å²	×	Range	Symmetry op-n	Sym.ID	ⁱN_at	ⁱN_res	Surface Å²	interface area, Å²	ΔⁱG kcal/mol	ΔⁱG P-value	N_HB	N_SB	N_DS	CSS
1	`1`		J	`810`	`220`	`58789`	`◊`	I	x,y,z	`1_555`	`755`	`190`	`66693`	`7710.8`	`-85.0`	`0.000`	`79`	`25`	`0`	`0.871`
	`2`		D	`803`	`218`	`59590`	`◊`	C	x,y,z	`1_555`	`777`	`193`	`65761`	`7649.7`	`-86.9`	`0.000`	`85`	`25`	`0`	`0.871`
	*Average:*													`7680.3`	`-86.0`	`0.000`	`82`	`25`	`0`	`0.871`
2	`3`		L	`268`	`75`	`30848`	`◊`	J	x,y,z	`1_555`	`281`	`80`	`58789`	`2585.9`	`-24.5`	`0.064`	`27`	`18`	`0`	`0.773`
	`4`		F	`258`	`68`	`30666`	`◊`	D	x,y,z	`1_555`	`266`	`78`	`59590`	`2519.9`	`-24.8`	`0.054`	`33`	`15`	`0`	`0.773`
	*Average:*													`2552.9`	`-24.6`	`0.059`	`30`	`17`	`0`	`0.773`
3	`5`		B	`196`	`52`	`13639`	`◊`	A	x,y,z	`1_555`	`217`	`52`	`20447`	`2066.9`	`-25.5`	`0.031`	`14`	`4`	`0`	`1.000`
4	`6`		C	`201`	`64`	`65761`	`◊`	A	x,y,z	`1_555`	`194`	`59`	`20447`	`1867.2`	`-4.4`	`0.599`	`19`	`9`	`0`	`0.184`
5	`7`		F	`204`	`56`	`30666`	`◊`	C	x,y,z	`1_555`	`200`	`56`	`65761`	`1796.3`	`-23.5`	`0.042`	`6`	`0`	`0`	`0.963`
	`8`		L	`183`	`51`	`30848`	`◊`	I	x,y,z	`1_555`	`187`	`52`	`66693`	`1728.9`	`-23.3`	`0.034`	`8`	`0`	`0`	`0.963`
	*Average:*													`1762.6`	`-23.4`	`0.038`	`7`	`0`	`0`	`0.963`
6	`9`		G	`180`	`46`	`13524`	`◊`	H	x,y,z	`1_555`	`163`	`43`	`13017`	`1794.3`	`-15.8`	`0.113`	`15`	`9`	`0`	`1.000`
7	`10`		G	`192`	`52`	`13524`	`◊`	I	x,y,z	`1_555`	`192`	`56`	`66693`	`1755.9`	`-5.3`	`0.516`	`27`	`10`	`0`	`0.944`
8	`11`		J	`170`	`52`	`58789`	`◊`	D	x,y,z	`1_555`	`180`	`55`	`59590`	`1542.4`	`-11.4`	`0.332`	`11`	`2`	`0`	`0.039`
9	`12`		E	`114`	`30`	`6670`	`◊`	D	x,y,z	`1_555`	`140`	`40`	`59590`	`1369.9`	`-11.2`	`0.204`	`11`	`10`	`0`	`0.590`
	`13`		K	`119`	`29`	`5863`	`◊`	J	x,y,z	`1_555`	`144`	`41`	`58789`	`1336.0`	`-9.7`	`0.182`	`11`	`5`	`0`	`0.590`
	*Average:*													`1352.9`	`-10.5`	`0.193`	`11`	`8`	`0`	`0.590`
10	`14`		J	`99`	`25`	`58789`	`◊`	H	x,y,z	`1_555`	`110`	`31`	`13017`	`1000.2`	`-3.0`	`0.559`	`10`	`8`	`0`	`0.037`
	`15`		D	`89`	`24`	`59590`	`◊`	B	x,y,z	`1_555`	`103`	`27`	`13639`	`990.4`	`-3.4`	`0.559`	`12`	`10`	`0`	`0.037`
	*Average:*													`995.3`	`-3.2`	`0.559`	`11`	`9`	`0`	`0.037`
11	`16`		I	`97`	`27`	`66693`	`◊`	C	-x-1,y-1/2,-z+1/2	`3_445`	`95`	`32`	`65761`	`862.7`	`-0.2`	`0.699`	`8`	`10`	`0`	`0.000`
12	`17`		C	`81`	`27`	`65761`	`◊`	F	x-1/2,-y+1/2,-z	`4_455`	`85`	`29`	`30666`	`755.0`	`3.4`	`0.851`	`6`	`10`	`0`	`0.000`
13	`18`		J	`60`	`18`	`58789`	`◊`	F	-x-1,y-1/2,-z+1/2	`3_445`	`61`	`18`	`30666`	`533.4`	`-0.2`	`0.683`	`5`	`1`	`0`	`0.000`
14	`19`		L	`52`	`17`	`30848`	`◊`	D	-x-1,y-1/2,-z+1/2	`3_445`	`56`	`16`	`59590`	`526.6`	`-0.1`	`0.662`	`3`	`0`	`0`	`0.000`
15	`20`		J	`50`	`14`	`58789`	`◊`	D	-x-1,y-1/2,-z+1/2	`3_445`	`55`	`15`	`59590`	`489.7`	`-3.0`	`0.457`	`4`	`1`	`0`	`0.000`
16	`21`		C	`59`	`16`	`65761`	`◊`	D	x-1/2,-y+1/2,-z	`4_455`	`47`	`15`	`59590`	`478.4`	`-0.6`	`0.625`	`3`	`4`	`0`	`0.000`
17	`22`		C	`55`	`17`	`65761`	`◊`	E	x-1/2,-y+1/2,-z	`4_455`	`41`	`10`	`6670`	`461.2`	`-4.4`	`0.269`	`1`	`0`	`0`	`0.000`
18	`23`		C	`52`	`18`	`65761`	`◊`	A	x-1/2,-y+1/2,-z	`4_455`	`42`	`12`	`20447`	`431.7`	`-1.5`	`0.323`	`0`	`2`	`0`	`0.000`
19	`24`		L	`50`	`13`	`30848`	`◊`	F	x,y-1,z	`1_545`	`47`	`13`	`30666`	`418.1`	`1.0`	`0.762`	`10`	`13`	`0`	`0.000`
20	`25`		D	`50`	`11`	`59590`	`◊`	L	x-1/2,-y-1/2,-z	`4_445`	`37`	`9`	`30848`	`405.1`	`2.9`	`0.797`	`8`	`13`	`0`	`0.000`
21	`26`		[4C6]J:2004	`31`	`1`	`649`	`◊`	J	x,y,z	`1_555`	`53`	`16`	`58789`	`387.8`	`-0.8`	`0.207`	`0`	`0`	`0`	`0.007`
	`27`		[4C6]D:2004	`31`	`1`	`644`	`◊`	D	x,y,z	`1_555`	`57`	`19`	`59590`	`373.6`	`-1.0`	`0.239`	`0`	`0`	`0`	`0.007`
	*Average:*													`380.7`	`-0.9`	`0.223`	`0`	`0`	`0`	`0.007`
22	`28`		F	`33`	`9`	`30666`	`◊`	A	x,y,z	`1_555`	`42`	`15`	`20447`	`375.7`	`-1.5`	`0.517`	`2`	`1`	`0`	`0.032`
23	`29`		B	`32`	`9`	`13639`	`◊`	G	x-1/2,-y-1/2,-z	`4_445`	`33`	`12`	`13524`	`292.9`	`-1.0`	`0.488`	`4`	`1`	`0`	`0.000`
24	`30`		I	`34`	`8`	`66693`	`◊`	H	x,y,z	`1_555`	`32`	`9`	`13017`	`276.1`	`2.2`	`0.804`	`5`	`5`	`0`	`0.017`
	`31`		C	`31`	`7`	`65761`	`◊`	B	x,y,z	`1_555`	`31`	`9`	`13639`	`269.4`	`1.9`	`0.783`	`5`	`4`	`0`	`0.017`
	*Average:*													`272.7`	`2.1`	`0.793`	`5`	`5`	`0`	`0.017`
25	`32`		K	`20`	`8`	`5863`	`◊`	I	x,y,z	`1_555`	`34`	`9`	`66693`	`229.2`	`-0.2`	`0.564`	`3`	`0`	`0`	`0.006`
	`33`		E	`19`	`6`	`6670`	`◊`	C	x,y,z	`1_555`	`28`	`8`	`65761`	`208.1`	`-0.6`	`0.541`	`2`	`0`	`0`	`0.006`
	*Average:*													`218.6`	`-0.4`	`0.552`	`3`	`0`	`0`	`0.006`
26	`34`		L	`23`	`10`	`30848`	`◊`	F	-x-1,y-1/2,-z+1/2	`3_445`	`23`	`9`	`30666`	`225.3`	`-0.5`	`0.591`	`0`	`0`	`0`	`0.000`
27	`35`		B	`24`	`11`	`13639`	`◊`	I	-x-1/2,-y,z-1/2	`2_454`	`21`	`4`	`66693`	`207.1`	`0.6`	`0.665`	`1`	`1`	`0`	`0.000`
28	`36`		[4C6]D:2004	`23`	`1`	`644`	`f`	C	x,y,z	`1_555`	`28`	`10`	`65761`	`206.2`	`-1.0`	`0.155`	`0`	`0`	`0`	`0.100`
	`37`		[4C6]J:2004	`23`	`1`	`649`	`f`	I	x,y,z	`1_555`	`27`	`10`	`66693`	`199.7`	`-1.1`	`0.135`	`0`	`0`	`0`	`0.100`
	*Average:*													`203.0`	`-1.1`	`0.145`	`0`	`0`	`0`	`0.100`
29	`38`		C	`23`	`8`	`65761`	`◊`	H	x-1/2,-y+1/2,-z	`4_455`	`20`	`6`	`13017`	`199.4`	`0.4`	`0.643`	`2`	`0`	`0`	`0.000`
30	`39`		A	`21`	`7`	`20447`	`◊`	I	-x-1/2,-y,z-1/2	`2_454`	`21`	`7`	`66693`	`165.8`	`0.6`	`0.672`	`0`	`0`	`0`	`0.000`
31	`40`		I	`25`	`8`	`66693`	`◊`	F	-x-1,y-1/2,-z+1/2	`3_445`	`21`	`9`	`30666`	`133.9`	`0.7`	`0.717`	`3`	`0`	`0`	`0.000`
	`41`		L	`9`	`4`	`30848`	`◊`	C	-x-1,y-1/2,-z+1/2	`3_445`	`7`	`3`	`65761`	`62.7`	`0.8`	`0.772`	`1`	`0`	`0`	`0.000`
	*Average:*													`98.3`	`0.7`	`0.745`	`2`	`0`	`0`	`0.000`
32	`42`		D	`16`	`4`	`59590`	`◊`	I	x-1/2,-y-1/2,-z	`4_445`	`22`	`9`	`66693`	`126.8`	`-0.2`	`0.606`	`1`	`0`	`0`	`0.000`
33	`43`		C	`14`	`4`	`65761`	`◊`	I	x-1,y,z	`1_455`	`15`	`7`	`66693`	`117.3`	`0.5`	`0.680`	`1`	`1`	`0`	`0.000`
34	`44`		B	`9`	`2`	`13639`	`◊`	I	x-1/2,-y-1/2,-z	`4_445`	`12`	`3`	`66693`	`102.6`	`-0.2`	`0.448`	`1`	`0`	`0`	`0.000`
35	`45`		D	`16`	`7`	`59590`	`◊`	A	x,y,z	`1_555`	`12`	`5`	`20447`	`67.8`	`0.7`	`0.730`	`0`	`0`	`0`	`0.000`
36	`46`		[MG]J:2001	`1`	`1`	`98`	`f`	J	x,y,z	`1_555`	`8`	`4`	`58789`	`50.8`	`-7.3`	`0.000`	`0`	`0`	`0`	`0.252`
	`47`		[MG]D:2001	`1`	`1`	`98`	`f`	D	x,y,z	`1_555`	`9`	`4`	`59590`	`45.4`	`-6.1`	`0.000`	`0`	`0`	`0`	`0.252`
	*Average:*													`48.1`	`-6.7`	`0.000`	`0`	`0`	`0`	`0.252`
37	`48`		[MG]I:1401	`1`	`1`	`98`	`f`	J	x,y,z	`1_555`	`11`	`5`	`58789`	`47.3`	`-6.3`	`0.000`	`0`	`0`	`0`	`0.217`
	`49`		[MG]C:1401	`1`	`1`	`98`	`f`	D	x,y,z	`1_555`	`8`	`4`	`59590`	`46.6`	`-6.1`	`0.000`	`0`	`0`	`0`	`0.217`
	*Average:*													`47.0`	`-6.2`	`0.000`	`0`	`0`	`0`	`0.217`
38	`50`		D	`6`	`3`	`59590`	`◊`	F	-x-1,y-1/2,-z+1/2	`3_445`	`7`	`3`	`30666`	`44.8`	`0.8`	`0.751`	`1`	`0`	`0`	`0.000`
39	`51`		C	`4`	`2`	`65761`	`◊`	L	x-1/2,-y-1/2,-z	`4_445`	`5`	`2`	`30848`	`31.7`	`-0.1`	`0.580`	`0`	`0`	`0`	`0.000`
40	`52`		[MG]C:1401	`1`	`1`	`98`	`◊`	C	x,y,z	`1_555`	`3`	`1`	`65761`	`29.9`	`-3.1`	`0.000`	`0`	`0`	`0`	`0.022`
	`53`		[MG]I:1401	`1`	`1`	`98`	`◊`	I	x,y,z	`1_555`	`3`	`1`	`66693`	`28.0`	`-3.1`	`0.000`	`0`	`0`	`0`	`0.022`
	*Average:*													`28.9`	`-3.1`	`0.000`	`0`	`0`	`0`	`0.022`
41	`54`		[MG]D:2001	`1`	`1`	`98`	`◊`	C	x,y,z	`1_555`	`1`	`1`	`65761`	`14.2`	`-1.7`	`0.000`	`0`	`0`	`0`	`0.011`
	`55`		[MG]J:2001	`1`	`1`	`98`	`◊`	I	x,y,z	`1_555`	`1`	`1`	`66693`	`2.9`	`-0.4`	`0.000`	`0`	`0`	`0`	`0.011`
	*Average:*													`8.6`	`-1.0`	`0.000`	`0`	`0`	`0`	`0.011`
42	`56`		G	`1`	`1`	`13524`	`◊`	J	x,y,z	`1_555`	`2`	`2`	`58789`	`3.4`	`-0.0`	`0.518`	`0`	`0`	`0`	`0.000`
43	`57`		C	`1`	`1`	`65761`	`x`	C	x-1/2,-y+1/2,-z	`4_455`	`1`	`1`	`65761`	`1.9`	`-0.0`	`0.571`	`0`	`0`	`0`	`0.000`

PDBe PISA v1.52 [20/10/2014]

Protein Data Bank
in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank in Europe

Bringing Structure to Biology

PDBePISA

Protein Data Bank
in Europe