Compound three letter code : ZMR
 
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Entry Information
Entry status  (1)
REL
(27)
 
Experimental methods  (1)
X-ray diffraction
(27)
 
Authors  (160)
Gao GF
(8)
Qi J
(8)
Wu Y
(7)
Collins PJ
(6)
Gamblin SJ
(6)
Gao F
(6)
Skehel JJ
(6)
Vavricka CJ
(6)
Liu J
(5)
Colman PM
(4)
Haire LF
(4)
Hay AJ
(4)
He J
(4)
Li Q
(4)
Liu WJ
(4)
Vachieri SG
(4)
Xiao H
(4)
Liu Y
(3)
Martin SR
(3)
Qi JX
(3)
Stevens J
(3)
Varghese JN
(3)
Walker PA
(3)
Wang M
(3)
Bi Y
(2)
Bi YH
(2)
Boucher CA
(2)
Boucher CAB
(2)
Caro V
(2)
Casalegno J
(2)
Casalegno JS
(2)
Cattle N
(2)
Chai Y
(2)
Daniels RS
(2)
Davis CT
(2)
Epa VC
(2)
Escuret V
(2)
Feng E
(2)
Ferraris O
(2)
Frobert E
(2)
Gamblin S
(2)
Garman EF
(2)
Gubareva LV
(2)
Guo Z
(2)
He JH
(2)
Jiang H
(2)
Laver WG
(2)
Li D
(2)
Li L
(2)
Lin YP
(2)
Lina B
(2)
Liu H
(2)
Liu W
(2)
McCauley JW
(2)
McKimm-Breschkin JL
(2)
Mccauley JW
(2)
Osterhaus AD
(2)
Osterhaus ADME
(2)
Ottmann M
(2)
Peng W
(2)
Qin C
(2)
Qin CF
(2)
Russell RJ
(2)
Sabatier M
(2)
Schutten M
(2)
Smith PW
(2)
Sollis SL
(2)
Sun L
(2)
Sun X
(2)
Sun XM
(2)
Valette M
(2)
Valla F
(2)
Van Der Vries E
(2)
Wang J
(2)
Xiao HX
(2)
Xiong X
(2)
Yan J
(2)
Yan JH
(2)
Yang H
(2)
Zhang Y
(2)
Zhang YF
(2)
Zhao M
(2)
van der Vries E
(2)
von Itzstein M
(2)
Baranovich T
(1)
Bethell R
(1)
Blackburn GM
(1)
Blick TJ
(1)
Borg NA
(1)
Brooke CB
(1)
Carney PJ
(1)
Chang JC
(1)
Chavas LMG
(1)
Cherry PC
(1)
Cleasby A
(1)
Colllins P
(1)
Colman P
(1)
Crennell SJ
(1)
Diefenbacher M
(1)
Dwek RA
(1)
 
More...
 
Homo / hetero assembly  (1)
homo
(27)
 
Assembly composition  (1)
protein structure
(27)
 
Assembly polymer count  (3)
tetramer
(22)
monomer
(3)
dimer
(2)
 
Resolution distribution
1.0 - 1.5
(2)
1.5 - 2
(16)
2.0 - 2.5
(6)
2.5 - 3
(3)
 
Release year distribution
1995 - 2000
(3)
2000 - 2005
(1)
2005 - 2010
(5)
2010 - 2015
(12)
2015 - 2020
(4)
2020 - 2025
(3)
 
Journal  (13)
J Virol
(4)
PLoS Pathog
(4)
J Infect Dis
(3)
To be published
(3)
Cell Res
(2)
J Mol Biol
(2)
Nature
(2)
Proc Natl Acad Sci U S A
(2)
J Med Chem
(1)
Molecules
(1)
Nat Commun
(1)
Protein Sci
(1)
Structure
(1)
 
Macromolecules
Organism superkingdom  (3)
Viruses
(24)
Bacteria
(2)
Eukaryota
(1)
 
Organism name  (21)
Influenza A virus
(6)
Influenza A virus (A/tern/Australia/G70C/1975(H11N9))
(2)
Homo sapiens
(1)
Human respirovirus 3
(1)
Influenza A virus (A/California/04/2009(H1N1))
(1)
Influenza A virus (A/California/07/2009(H1N1))
(1)
Influenza A virus (A/Netherlands/2631_1202/2010(H1N1))
(1)
Influenza A virus (A/RI/5+/1957(H2N2))
(1)
Influenza A virus (A/Shandong/9/1993(H3N2))
(1)
Influenza A virus (A/Shanghai/02/2013(H7N9))
(1)
Influenza A virus (A/Viet Nam/1203/2004(H5N1))
(1)
Influenza A virus (A/duck/Alberta/60/1976(H12N5))
(1)
Influenza A virus (A/harbor seal/Massachusetts/1/2011(H3N8))
(1)
Influenza A virus (A/swine/Missouri/2124514/2006(H2N3))
(1)
Influenza B virus
(1)
Influenza B virus (B/Brisbane/60/2008)
(1)
Influenza B virus (STRAIN B/BEIJING/1/87)
(1)
Streptococcus pneumoniae TIGR4
(1)
Vibrio cholerae O1 biovar El Tor str. N16961
(1)
Wuhan spiny eel influenza virus
(1)
unidentified influenza virus
(1)
 
Molecule name  (10)
Neuraminidase
(24)
NA
(2)
Cytosolic sialidase
(1)
Hemagglutinin-neuraminidase glycoprotein
(1)
N-acetyl-alpha-neuraminidase 2
(1)
NANase
(1)
Neuraminidase A
(1)
Sialidase
(1)
Sialidase A
(1)
Sialidase-2
(1)
 
Molecule type  (1)
Protein
(27)
 
Gene names  (6)
NA
(23)
HN
(1)
NEU2
(1)
VC_1784
(1)
nanA
(1)
nanH
(1)
 
Interacting ligands  (13)
ZMR : ZANAMIVIR
(27)
CA : CALCIUM ION
(24)
NAG : 2-acetamido-2-deoxy-beta-D-glucopyranose
(21)
BMA : beta-D-mannopyranose
(12)
MAN : alpha-D-mannopyranose
(10)
GOL : GLYCEROL
(5)
FUC : alpha-L-fucopyranose
(3)
EDO : 1,2-ETHANEDIOL
(2)
ACT : ACETATE ION
(1)
CL : CHLORIDE ION
(1)
NA : SODIUM ION
(1)
PEG : DI(HYDROXYETHYL)ETHER
(1)
SO4 : SULFATE ION
(1)
 
Function and Biology
EC number / name  (1)
3.2.1.18 : Exo-alpha-sialidase
(27)
 
Biological function  (7)
exo-alpha-sialidase activity
(27)
hydrolase activity
(8)
hydrolase activity, acting on glycosyl bonds
(8)
metal ion binding
(6)
host cell surface receptor binding
(1)
protein binding
(1)
sialic acid binding
(1)
 
Biological process  (9)
carbohydrate metabolic process
(23)
viral budding from plasma membrane
(15)
ganglioside catabolic process
(2)
oligosaccharide catabolic process
(2)
glycoprotein catabolic process
(1)
glycosphingolipid catabolic process
(1)
lipid catabolic process
(1)
lipid metabolic process
(1)
viral life cycle
(1)
 
Biological cell component  (12)
membrane
(25)
host cell membrane
(23)
virion membrane
(23)
host cell plasma membrane
(6)
virion component
(6)
cytoplasm
(2)
catalytic complex
(1)
cytosol
(1)
extracellular region
(1)
intracellular membrane-bounded organelle
(1)
lysosome
(1)
viral envelope
(1)
 
Sequence and Structure classification
SCOP fold  (1)
6-bladed beta-propeller
(5)
 
SCOP family  (1)
Sialidases (neuraminidases)
(5)
 
CATH class  (1)
Mainly Beta
(24)
 
CATH topology  (3)
Neuraminidase
(24)
Intramolecular trans-sialidase; domain 3
(1)
Jelly Rolls
(1)
 
Pfam accession / name  (4)
PF00064 : Neur
(23)
PF13088 : BNR_2
(2)
PF00423 : HN
(1)
PF09264 : Sial-lect-inser
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(24)
 
Diffraction radiation source type  (2)
Synchrotron
(23)
Rotating anode
(5)
 
Diffraction source  (22)
SSRF BEAMLINE BL17U
(3)
APS BEAMLINE 22-ID
(2)
DIAMOND BEAMLINE I04
(2)
PHOTON FACTORY BEAMLINE AR-NE3A
(2)
SSRL BEAMLINE BL11-1
(2)
APS BEAMLINE 14-ID-B
(1)
APS BEAMLINE 21-ID-D
(1)
BESSY BEAMLINE 14.1
(1)
DIAMOND
(1)
DIAMOND BEAMLINE I03
(1)
ESRF BEAMLINE BM14
(1)
MACSCIENCE M18X
(1)
PHOTON FACTORY BEAMLINE AR-NW12A
(1)
PHOTON FACTORY BEAMLINE BL-17A
(1)
PHOTON FACTORY BEAMLINE BL-6A
(1)
RIGAKU
(1)
RIGAKU MICROMAX-007
(1)
RIGAKU RU200
(1)
RIGAKU RU200H
(1)
SRS BEAMLINE PX9.6
(1)
SSRF BEAMLINE BL02U1
(1)
SSRF BEAMLINE BL17U1
(1)
 
Synchrotron site  (8)
Photon Factory
(5)
SSRF
(5)
APS
(4)
Diamond
(4)
SSRL
(2)
BESSY
(1)
ESRF
(1)
SRS
(1)
 
Diffraction detector type  (3)
CCD
(14)
Pixel
(7)
Image plate
(6)
 
Refinement software  (4)
PHENIX
(13)
REFMAC
(8)
CNS
(3)
X-PLOR
(3)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 27
Entries 1 to 10 of 27
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A naturally-occurring neuraminidase-inhibitors-resistant NA from asiatic toad influenza B-like virus
Chai Y, Wu Y, Gao F
Proc Natl Acad Sci U S A (2022) [PMID: 36191180  ]
Assembly composition: protein only structure
Bound ligands: CA    ZMR    CA    ZMR   
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-104387 (Preferred)   search this ID
PDBe-KB: A0A2P1GNT2   
X-ray diffraction
1.9Å resolution
Released: 3 Aug 2022
Model geometry
Fit model/data
7fgc
7fgc
7fgc
The crystal structure of neuraminidase in complex with zanamivir from A/Shanghai/2/2013 (H7N9) influenza virus
Yang H, Stevens J
J Infect Dis (2017) [PMID: 28934455  ]
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    ZMR   
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(6), NAG(2)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-195768 (Preferred)   search this ID
PDBe-KB: R4NFR6   
X-ray diffraction
2.4Å resolution
Released: 9 Aug 2017
Model geometry
Fit model/data
5l17
5l17
5l17
Vibrio cholerae neuraminidase complexed with zanamivir
Schuetz A, Heinemann U
Molecules (2017) [PMID: 29149072  ]
Assembly composition: protein only structure
Bound ligands: CA    PEG    GOL    PEG    ZMR    CA    NA    NA    ZMR   
Assembly name: Sialidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-143046 (Preferred)   search this ID
PDBe-KB: P0C6E9   
X-ray diffraction
1.75Å resolution
Released: 29 Nov 2017
Model geometry
Fit model/data
6eku
6eku
6eku
Influenza Virus N9 Neuraminidase A complex with Zanamivir molecule (Tern).
Salinger MT, Hobbs JR, Murray JW, Laver WG, Kuhn P, Garman EF
To be published
Assembly composition: protein only structure
Bound ligands: K    CA    K    GOL    ZMR    CA    ZMR   
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(6), NAG(2)
Molecule 2 - NAG(2)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137058 (Preferred)   search this ID
PDBe-KB: P03472   
X-ray diffraction
1.3Å resolution
Released: 29 Aug 2018
Model geometry
Fit model/data
6hcx
6hcx
6hcx
Structure of the Neuraminidase from the B/Brisbane/60/2008 virus in complex with Zanamivir
Vachieri SG, Collins PJ, Escuret V, Casalegno JS, Cattle N, Ferraris O, Sabatier M, Frobert E, Caro V, Skehel JJ, Gamblin SJ, Valla F, Valette M, Ottmann M, McCauley JW, Daniels RS, Lina B
J Infect Dis (2014) [PMID: 24795482  ]
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    EDO    ZMR   
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(1), NAG(2)
Molecule 2 - NAG(2)
Molecule 3 - BMA(1), NAG(2)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-111013 (Preferred)   search this ID
PDBe-KB: C0LT34   
X-ray diffraction
2.4Å resolution
Released: 14 May 2014
Model geometry
Fit model/data
4cpn
4cpn
4cpn
Shanghai N9-zanamivir
Wu Y, Qi JX, Gao F, Gao GF
Cell Res (2013) [PMID: 24165891  ]
Source organism: Influenza A virus  
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    ZMR   
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(6), NAG(2)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-100377 (Preferred)   search this ID
PDBe-KB: A0A067Y7N7   
X-ray diffraction
1.801Å resolution
Released: 20 Nov 2013
Model geometry
Fit model/data
4mwx
4mwx
4mwx
Anhui N9-zanamivir
Wu Y, Qi JX, Gao F, Gao GF
Cell Res (2013) [PMID: 24165891  ]
Source organism: Influenza A virus  
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    ZMR   
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(6), NAG(2)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-100101 (Preferred)   search this ID
PDBe-KB: A0A024E3Q2   
X-ray diffraction
1.797Å resolution
Released: 20 Nov 2013
Model geometry
Fit model/data
4mwr
4mwr
4mwr
H1N1 2009 Pandemic Influenza Virus: Resistance of the I223R Neuraminidase Mutant Explained by Kinetic and Structural Analysis
van der Vries E, Vachieri SG, Xiong X, Liu J, Collins PJ, Walker PA, Haire LF, Hay AJ, Schutten M, Osterhaus ADME, Martin SR, Boucher CAB, Skehel JJ, Gamblin SJ
PLoS Pathog (2012) [PMID: 23028314  ]
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    ZMR   
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-123733 (Preferred)   search this ID
PDBe-KB: F8UU09   
X-ray diffraction
2.84Å resolution
Released: 3 Oct 2012
Model geometry
Fit model/data
4b7n
4b7n
4b7n
H1N1 2009 Pandemic Influenza Virus: Resistance of the I223R Neuraminidase Mutant Explained by Kinetic and Structural Analysis
Liu J, van der Vries E, Vachieri SG, Xiong X, Collins PJ, Walker PA, Haire LF, Hay AJ, Schutten M, Osterhaus ADME, Martin SR, Boucher CAB, Skehel JJ, Gamblin SJ
PLoS Pathog (2012) [PMID: 23028314  ]
Assembly composition: protein only structure
Bound ligands: CA    NAG    ZMR    CA    NAG    ZMR   
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-111703 (Preferred)   search this ID
PDBe-KB: C7FH46   
X-ray diffraction
2.728Å resolution
Released: 3 Oct 2012
Model geometry
Fit model/data
4b7q
4b7q
4b7q
Neuraminidase of A/Brevig Mission/1/1918 H1N1 strain in complex with zanamivir
Xu X, Zhu X, Wilson IA
J Virol (2008) [PMID: 18715929  ]
Source organism: Influenza A virus  
Assembly composition: protein only structure
Bound ligands: CA    GOL    NAG    ZMR    CA    NAG    ZMR   
Carbohydrate polymer components:
Molecule 1 - FUC(1), NAG(1)
Assembly name: Neuraminidase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-191526 (Preferred)   search this ID
PDBe-KB: Q9IGQ6   
X-ray diffraction
1.45Å resolution
Released: 7 Oct 2008
Model geometry
Fit model/data
3b7e
3b7e
3b7e
Entries 1 to 10 of 27
Entries 1 to 10 of 27