Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 00A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2P O O2P N N N 0 -2.658 -3.412 0.132
2 P P P S N N 0 -2.103 -1.962 0.559
3 O1P O O1P N N N 0 -1.97 -1.899 2.032
4 O3P O O3P N N N 0 -3.132 -0.827 0.064
5 CC C CC N N N 0 -4.358 -0.827 0.622
6 C1C C C1C N Y N 0 -5.354 0.185 0.217
7 C2C C C2C N Y N 0 -6.626 0.188 0.794
8 C3C C C3C N Y N 0 -7.551 1.136 0.412
9 C4C C C4C N Y N 0 -7.222 2.084 -0.543
10 CL4A CL CL4A N N N 0 -8.392 3.274 -1.02
11 C5C C C5C N Y N 0 -5.962 2.086 -1.119
12 C6C C C6C N Y N 0 -5.026 1.148 -0.74
13 O2 O O2 N N N 0 -4.644 -1.66 1.459
14 O5' O O5' N N N 0 -0.665 -1.716 -0.121
15 C5' C C5' N N N 0 0.49 -2.495 0.199
16 C4' C C4' R N N 0 1.682 -2.0 -0.623
17 C3' C C3' S N N 0 2.922 -2.882 -0.358
18 O3' O O3' N N N 0 3.073 -3.857 -1.393
19 C2' C C2' R N N 0 4.102 -1.886 -0.373
20 O2' O O2' N N N 0 5.022 -2.214 -1.416
21 C1' C C1' R N N 0 3.436 -0.519 -0.645
22 O4' O O4' N N N 0 2.071 -0.676 -0.197
23 N9 N N9 N Y N 0 4.106 0.536 0.12
24 C4 C C4 N Y N 0 5.227 1.229 -0.263
25 C5 C C5 N Y N 0 5.5 2.131 0.78
26 N7 N N7 N Y N 0 4.549 1.944 1.727
27 C8 C C8 N Y N 0 3.727 1.013 1.339
28 C6 C C6 N Y N 0 6.612 2.979 0.65
29 N6 N N6 N N N 0 6.931 3.887 1.644
30 N1 N N1 N Y N 0 7.352 2.889 -0.451
31 C2 C C2 N Y N 0 7.055 2.026 -1.405
32 N3 N N3 N Y N 0 6.024 1.211 -1.326
33 HO2P H HO2P N N N 0 -2.77 -3.525 -0.822
34 H2C H H2C N N N 0 -6.884 -0.551 1.538
35 H3C H H3C N N N 0 -8.535 1.139 0.857
36 H5C H H5C N N N 0 -5.711 2.828 -1.863
37 H6C H H6C N N N 0 -4.042 1.154 -1.187
38 H5' H H5' N N N 0 0.714 -2.394 1.26
39 H5'A H H5'A N N N 0 0.298 -3.542 -0.034
40 H4' H H4' N N N 0 1.436 -2.0 -1.685
41 H3' H H3' N N N 0 2.844 -3.368 0.614
42 HO3' H HO3' N N N 0 3.836 -4.439 -1.276
43 H2' H H2' N N N 0 4.608 -1.879 0.593
44 HO2' H HO2' N N N 0 5.424 -3.089 -1.325
45 H1' H H1' N N N 0 3.463 -0.289 -1.71
46 H8 H H8 N N N 0 2.873 0.667 1.902
47 HN6 H HN6 N N N 0 6.384 3.943 2.443
48 HN6A H HN6A N N N 0 7.701 4.467 1.543
49 H2 H H2 N N N 0 7.683 1.985 -2.283