Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 06O

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 183


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C14 C C1 N N N 0 -8.798 -1.054 1.456
2 C11 C C2 N N N 0 -6.288 1.804 0.871
3 C10 C C3 N N N 0 -4.916 1.828 0.193
4 C12 C C4 N N N 0 -6.855 0.384 0.823
5 C13 C C5 N N N 0 -8.275 0.383 1.393
6 C15 C C6 N N N 0 -10.259 -1.045 1.913
7 C16 C C7 N N N 0 -10.817 -2.469 1.862
8 C20 C C8 N N N 0 -14.916 -5.266 2.445
9 C21 C C9 N N N 0 -16.408 -5.241 2.786
10 C22 C C10 N N N 0 -16.966 -6.665 2.736
11 C17 C C11 N N N 0 -12.308 -2.444 2.204
12 C18 C C12 N N N 0 -12.867 -3.867 2.154
13 C02 C C13 S N N 0 -1.026 6.595 -3.704
14 C03 C C14 R N N 0 -1.473 7.203 -2.372
15 C05 C C15 R N N 0 -0.922 6.363 -1.218
16 C07 C C16 N N N 0 -2.524 4.705 -0.612
17 C08 C C17 N N N 0 -3.087 3.308 -0.648
18 C09 C C18 N N N 0 -4.401 3.267 0.136
19 C19 C C19 N N N 0 -14.358 -3.843 2.495
20 C24 C C20 S N N 0 0.606 6.345 -1.284
21 C28 C C21 N N N 0 3.556 5.132 2.923
22 C29 C C22 R N N 0 4.205 3.777 3.215
23 C31 C C23 N N N 0 6.007 2.553 2.249
24 C32 C C24 N N N 0 6.808 2.045 1.078
25 C33 C C25 N N N 0 7.976 1.197 1.588
26 C34 C C26 N N N 0 8.789 0.681 0.4
27 C35 C C27 N N N 0 9.956 -0.166 0.91
28 C36 C C28 N N N 0 10.769 -0.682 -0.279
29 C37 C C29 N N N 0 11.937 -1.53 0.231
30 C38 C C30 N N N 0 12.75 -2.046 -0.958
31 C39 C C31 N N N 0 13.9 -2.88 -0.455
32 C40 C C32 N N N 0 14.078 -4.113 -0.918
33 C41 C C33 N N N 0 13.217 -4.626 -1.995
34 C42 C C34 N N N 0 13.332 -5.888 -2.394
35 C43 C C35 N N N 0 14.431 -6.757 -1.837
36 C47 C C39 N N N 0 15.43 -10.834 0.874
37 C44 C C36 N N N 0 13.815 -7.913 -1.047
38 C45 C C37 N N N 0 14.931 -8.795 -0.482
39 C46 C C38 N N N 0 14.315 -9.952 0.308
40 C48 C C40 N N N 0 14.815 -11.99 1.664
41 C50 C C41 N N N 0 3.12 2.759 3.571
42 C52 C C42 N N N 0 1.186 1.762 2.598
43 C53 C C43 N N N 0 0.208 1.561 1.469
44 C54 C C44 N N N 0 -0.669 0.343 1.765
45 C55 C C45 N N N 0 -1.725 0.197 0.668
46 C56 C C46 N N N 0 -2.52 -1.091 0.893
47 C57 C C47 N N N 0 -3.491 -1.301 -0.27
48 C58 C C48 N N N 0 -4.2 -2.648 -0.106
49 C59 C C49 N N N 0 -5.256 -2.805 -1.202
50 C60 C C50 N N N 0 -6.044 -4.095 -0.968
51 C61 C C51 N N N 0 -7.018 -4.315 -2.128
52 C62 C C52 N N N 0 -7.89 -5.538 -1.838
53 C63 C C53 N N N 0 -8.941 -5.688 -2.939
54 C64 C C54 N N N 0 -9.813 -6.911 -2.648
55 C65 C C55 N N N 0 -10.865 -7.061 -3.749
56 C66 C C56 N N N 0 -11.737 -8.284 -3.459
57 C67 C C57 N N N 0 -12.788 -8.434 -4.56
58 C71 C C58 R N N 0 1.053 5.738 -2.615
59 CA2 C C59 S N N 0 0.502 6.578 -3.769
60 O01 O O1 N N N 0 -1.54 7.38 -4.782
61 O04 O O2 N N N 0 -2.9 7.219 -2.311
62 O06 O O3 N N N 0 -1.427 5.005 -1.325
63 O23 O O4 N N N 0 -3.06 5.556 0.058
64 O25 O O5 N N N 0 1.12 5.56 -0.206
65 O27 O O6 N N N 0 2.55 4.972 1.921
66 O30 O O7 N N N 0 4.928 3.324 2.04
67 O49 O O8 N N N 0 6.336 2.267 3.376
68 O51 O O9 N N N 0 2.141 2.7 2.5
69 O68 O O10 N N N 0 1.11 1.079 3.592
70 O69 O O11 N N N 0 1.426 7.339 1.706
71 O70 O O12 N N N 0 3.352 6.658 0.222
72 O72 O O13 N N N 0 2.48 5.721 -2.677
73 OA3 O O14 N N N 0 0.919 6.011 -5.013
74 P26 P P1 N N N 0 2.139 6.144 0.896
75 H1 H H1 N N N 0 -8.729 -1.51 0.468
76 H2 H H2 N N N 0 -8.2 -1.627 2.164
77 H3 H H3 N N N 0 -6.186 2.119 1.909
78 H4 H H4 N N N 0 -6.963 2.483 0.35
79 H5 H H5 N N N 0 -4.218 1.215 0.764
80 H6 H H6 N N N 0 -5.004 1.433 -0.818
81 H7 H H7 N N N 0 -6.878 0.036 -0.21
82 H8 H H8 N N N 0 -6.226 -0.28 1.416
83 H9 H H9 N N N 0 -8.925 0.978 0.751
84 H10 H H10 N N N 0 -8.265 0.81 2.395
85 H11 H H11 N N N 0 -10.318 -0.667 2.933
86 H12 H H12 N N N 0 -10.842 -0.403 1.253
87 H13 H H13 N N N 0 -10.68 -2.878 0.861
88 H14 H H14 N N N 0 -10.289 -3.092 2.585
89 H15 H H15 N N N 0 -14.389 -5.889 3.167
90 H16 H H16 N N N 0 -14.78 -5.675 1.444
91 H17 H H17 N N N 0 -16.544 -4.832 3.787
92 H18 H H18 N N N 0 -16.935 -4.618 2.064
93 H19 H H19 N N N 0 -18.028 -6.647 2.979
94 H20 H H20 N N N 0 -16.829 -7.074 1.735
95 H21 H H21 N N N 0 -16.438 -7.288 3.458
96 H26 H H26 N N N 0 -1.405 5.577 -3.784
97 H22 H H22 N N N 0 -12.445 -2.035 3.205
98 H23 H H23 N N N 0 -12.836 -1.821 1.482
99 H24 H H24 N N N 0 -12.73 -4.276 1.152
100 H25 H H25 N N N 0 -12.339 -4.49 2.876
101 H27 H H27 N N N 0 -1.094 8.222 -2.293
102 H28 H H28 N N N 0 -1.24 6.795 -0.27
103 H29 H H29 N N N 0 -3.272 3.017 -1.682
104 H30 H H30 N N N 0 -2.374 2.617 -0.198
105 H31 H H31 N N N 0 -5.139 3.898 -0.36
106 H32 H H32 N N N 0 -4.232 3.634 1.148
107 H33 H H33 N N N 0 -14.886 -3.22 1.773
108 H34 H H34 N N N 0 -14.495 -3.434 3.496
109 H35 H H35 N N N 0 0.985 7.364 -1.204
110 H36 H H36 N N N 0 3.102 5.522 3.834
111 H37 H H37 N N N 0 4.315 5.829 2.568
112 H38 H H38 N N N 0 4.896 3.879 4.051
113 H39 H H39 N N N 0 6.17 1.436 0.438
114 H40 H H40 N N N 0 7.194 2.89 0.508
115 H41 H H41 N N N 0 8.614 1.806 2.228
116 H42 H H42 N N N 0 7.589 0.353 2.159
117 H43 H H43 N N N 0 8.15 0.072 -0.24
118 H44 H H44 N N N 0 9.175 1.526 -0.17
119 H45 H H45 N N N 0 10.595 0.443 1.55
120 H46 H H46 N N N 0 9.57 -1.011 1.48
121 H47 H H47 N N N 0 10.131 -1.291 -0.919
122 H48 H H48 N N N 0 11.156 0.163 -0.849
123 H49 H H49 N N N 0 12.575 -0.921 0.871
124 H50 H H50 N N N 0 11.55 -2.374 0.801
125 H51 H H51 N N N 0 12.111 -2.655 -1.598
126 H52 H H52 N N N 0 13.136 -1.201 -1.528
127 H53 H H53 N N N 0 14.579 -2.476 0.28
128 H54 H H54 N N N 0 14.854 -4.739 -0.503
129 H55 H H55 N N N 0 12.491 -3.976 -2.462
130 H56 H H56 N N N 0 12.639 -6.292 -3.117
131 H57 H H57 N N N 0 15.03 -7.155 -2.656
132 H58 H H58 N N N 0 15.065 -6.163 -1.178
133 H59 H H59 N N N 0 13.216 -7.516 -0.228
134 H60 H H60 N N N 0 13.182 -8.507 -1.706
135 H61 H H61 N N N 0 15.53 -9.193 -1.301
136 H62 H H62 N N N 0 15.564 -8.202 0.177
137 H63 H H63 N N N 0 13.716 -9.554 1.128
138 H64 H H64 N N N 0 13.681 -10.545 -0.35
139 H65 H H65 N N N 0 16.03 -11.231 0.055
140 H66 H H66 N N N 0 16.064 -10.24 1.533
141 H67 H H67 N N N 0 15.609 -12.618 2.067
142 H68 H H68 N N N 0 14.216 -11.592 2.483
143 H69 H H69 N N N 0 14.181 -12.584 1.005
144 H70 H H70 N N N 0 3.574 1.776 3.702
145 H71 H H71 N N N 0 2.629 3.059 4.496
146 H72 H H72 N N N 0 -0.42 2.446 1.371
147 H73 H H73 N N N 0 0.754 1.398 0.54
148 H74 H H74 N N N 0 -0.049 -0.553 1.794
149 H75 H H75 N N N 0 -1.162 0.476 2.728
150 H76 H H76 N N N 0 -2.402 1.051 0.698
151 H77 H H77 N N N 0 -1.235 0.156 -0.305
152 H78 H H78 N N N 0 -1.834 -1.936 0.951
153 H79 H H79 N N N 0 -3.08 -1.013 1.825
154 H80 H H80 N N N 0 -4.231 -0.5 -0.275
155 H81 H H81 N N N 0 -2.94 -1.293 -1.21
156 H82 H H82 N N N 0 -3.47 -3.454 -0.186
157 H83 H H83 N N N 0 -4.681 -2.688 0.871
158 H84 H H84 N N N 0 -5.936 -1.954 -1.176
159 H85 H H85 N N N 0 -4.766 -2.85 -2.175
160 H86 H H86 N N N 0 -5.355 -4.937 -0.909
161 H87 H H87 N N N 0 -6.603 -4.016 -0.036
162 H88 H H88 N N N 0 -7.652 -3.435 -2.242
163 H89 H H89 N N N 0 -6.456 -4.479 -3.048
164 H90 H H90 N N N 0 -7.265 -6.431 -1.808
165 H91 H H91 N N N 0 -8.386 -5.41 -0.876
166 H92 H H92 N N N 0 -9.566 -4.795 -2.968
167 H93 H H93 N N N 0 -8.445 -5.815 -3.901
168 H94 H H94 N N N 0 -9.188 -7.804 -2.619
169 H95 H H95 N N N 0 -10.31 -6.783 -1.686
170 H96 H H96 N N N 0 -11.49 -6.168 -3.779
171 H97 H H97 N N N 0 -10.368 -7.189 -4.711
172 H101 H H101 N N N 0 -12.292 -8.562 -5.522
173 H98 H H98 N N N 0 -11.112 -9.177 -3.429
174 H99 H H99 N N N 0 -12.233 -8.157 -2.497
175 H100 H H100 N N N 0 -13.413 -7.542 -4.589
176 H102 H H102 N N N 0 -13.409 -9.306 -4.353
177 H103 H H103 N N N 0 0.674 4.719 -2.695
178 H104 H H104 N N N 0 0.881 7.597 -3.69
179 H105 H H105 N N N 0 -1.296 7.053 -5.658
180 H106 H H106 N N N 0 -3.318 7.735 -3.014
181 H107 H H107 N N N 0 0.622 7.073 2.172
182 H108 H H108 N N N 0 2.835 5.348 -3.495
183 H109 H H109 N N N 0 0.606 6.493 -5.79