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PDBeChem : Atoms of Molecule
Molecule : 0R8
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 47
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
O5' |
O |
O5' |
N |
N |
N |
0 |
-2.987 |
2.624 |
-0.19 |
2 |
P |
P |
P |
N |
N |
N |
0 |
-2.186 |
4.0 |
-0.43 |
3 |
OP1 |
O |
OP1 |
N |
N |
N |
0 |
-2.251 |
4.83 |
0.793 |
4 |
OP2 |
O |
OP2 |
N |
N |
N |
0 |
-0.647 |
3.671 |
-0.774 |
5 |
C1' |
C |
C1' |
R |
N |
N |
0 |
-3.497 |
-1.672 |
0.034 |
6 |
N1 |
N |
N1 |
N |
N |
N |
0 |
-2.235 |
-2.393 |
-0.144 |
7 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-1.059 |
-1.717 |
-0.047 |
8 |
C5 |
C |
C5 |
N |
N |
N |
0 |
0.125 |
-2.409 |
-0.217 |
9 |
C1 |
C |
C1 |
N |
N |
N |
0 |
1.388 |
-1.742 |
-0.124 |
10 |
C3 |
C |
C3 |
N |
N |
N |
0 |
2.424 |
-1.195 |
-0.049 |
11 |
N3 |
N |
N3 |
N |
N |
N |
0 |
-1.145 |
-4.421 |
-0.569 |
12 |
C4 |
C |
C4 |
N |
N |
N |
0 |
0.048 |
-3.848 |
-0.493 |
13 |
C2 |
C |
C2 |
N |
N |
N |
0 |
-2.258 |
-3.712 |
-0.394 |
14 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-3.335 |
-4.279 |
-0.467 |
15 |
N4 |
N |
N4 |
N |
N |
N |
0 |
1.192 |
-4.588 |
-0.671 |
16 |
O4' |
O |
O4' |
N |
N |
N |
0 |
-3.319 |
-0.291 |
-0.301 |
17 |
C4' |
C |
C4' |
S |
N |
N |
0 |
-3.646 |
0.534 |
0.829 |
18 |
C3' |
C |
C3' |
N |
N |
N |
0 |
-3.444 |
-0.376 |
2.066 |
19 |
C2' |
C |
C2' |
N |
N |
N |
0 |
-3.938 |
-1.743 |
1.512 |
20 |
C5' |
C |
C5' |
N |
N |
N |
0 |
-2.706 |
1.739 |
0.896 |
21 |
C01 |
C |
C01 |
N |
Y |
N |
0 |
3.688 |
-0.528 |
0.043 |
22 |
C02 |
C |
C02 |
N |
Y |
N |
0 |
3.738 |
0.844 |
0.314 |
23 |
C03 |
C |
C03 |
N |
Y |
N |
0 |
4.944 |
1.479 |
0.402 |
24 |
C04 |
C |
C04 |
N |
Y |
N |
0 |
6.128 |
0.759 |
0.221 |
25 |
C05 |
C |
C05 |
N |
Y |
N |
0 |
6.08 |
-0.611 |
-0.05 |
26 |
C |
C |
C |
N |
Y |
N |
0 |
4.875 |
-1.249 |
-0.131 |
27 |
C7 |
C |
C7 |
N |
N |
N |
0 |
7.392 |
1.426 |
0.313 |
28 |
C8 |
C |
C8 |
N |
N |
N |
0 |
8.428 |
1.973 |
0.388 |
29 |
HOP2 |
H |
HOP2 |
N |
N |
N |
0 |
-0.528 |
3.129 |
-1.566 |
30 |
H1' |
H |
H1' |
N |
N |
N |
0 |
-4.266 |
-2.11 |
-0.602 |
31 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-1.051 |
-0.656 |
0.157 |
32 |
H41 |
H |
H41 |
N |
N |
N |
0 |
2.06 |
-4.159 |
-0.614 |
33 |
H42 |
H |
H42 |
N |
N |
N |
0 |
1.131 |
-5.538 |
-0.854 |
34 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-4.683 |
0.865 |
0.769 |
35 |
H3' |
H |
H3' |
N |
N |
N |
0 |
-2.392 |
-0.424 |
2.351 |
36 |
H3'' |
H |
H3'' |
N |
N |
N |
0 |
-4.06 |
-0.046 |
2.902 |
37 |
H2' |
H |
H2' |
N |
N |
N |
0 |
-5.022 |
-1.825 |
1.592 |
38 |
H2'' |
H |
H2'' |
N |
N |
N |
0 |
-3.446 |
-2.57 |
2.025 |
39 |
H5' |
H |
H5' |
N |
N |
N |
0 |
-1.673 |
1.398 |
0.828 |
40 |
H5'' |
H |
H5'' |
N |
N |
N |
0 |
-2.854 |
2.263 |
1.84 |
41 |
H14 |
H |
H14 |
N |
N |
N |
0 |
2.823 |
1.4 |
0.454 |
42 |
H15 |
H |
H15 |
N |
N |
N |
0 |
4.982 |
2.538 |
0.611 |
43 |
H16 |
H |
H16 |
N |
N |
N |
0 |
6.995 |
-1.166 |
-0.19 |
44 |
H17 |
H |
H17 |
N |
N |
N |
0 |
4.838 |
-2.309 |
-0.336 |
45 |
H18 |
H |
H18 |
N |
N |
N |
0 |
9.355 |
2.462 |
0.455 |
46 |
OP3 |
O |
OP3 |
N |
N |
Y |
0 |
-2.851 |
4.8 |
-1.658 |
47 |
HOP3 |
H |
H1 |
N |
N |
Y |
0 |
-2.417 |
5.641 |
-1.86 |
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