Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0R8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O5' O O5' N N N 0 -2.987 2.624 -0.19
2 P P P N N N 0 -2.186 4.0 -0.43
3 OP1 O OP1 N N N 0 -2.251 4.83 0.793
4 OP2 O OP2 N N N 0 -0.647 3.671 -0.774
5 C1' C C1' R N N 0 -3.497 -1.672 0.034
6 N1 N N1 N N N 0 -2.235 -2.393 -0.144
7 C6 C C6 N N N 0 -1.059 -1.717 -0.047
8 C5 C C5 N N N 0 0.125 -2.409 -0.217
9 C1 C C1 N N N 0 1.388 -1.742 -0.124
10 C3 C C3 N N N 0 2.424 -1.195 -0.049
11 N3 N N3 N N N 0 -1.145 -4.421 -0.569
12 C4 C C4 N N N 0 0.048 -3.848 -0.493
13 C2 C C2 N N N 0 -2.258 -3.712 -0.394
14 O2 O O2 N N N 0 -3.335 -4.279 -0.467
15 N4 N N4 N N N 0 1.192 -4.588 -0.671
16 O4' O O4' N N N 0 -3.319 -0.291 -0.301
17 C4' C C4' S N N 0 -3.646 0.534 0.829
18 C3' C C3' N N N 0 -3.444 -0.376 2.066
19 C2' C C2' N N N 0 -3.938 -1.743 1.512
20 C5' C C5' N N N 0 -2.706 1.739 0.896
21 C01 C C01 N Y N 0 3.688 -0.528 0.043
22 C02 C C02 N Y N 0 3.738 0.844 0.314
23 C03 C C03 N Y N 0 4.944 1.479 0.402
24 C04 C C04 N Y N 0 6.128 0.759 0.221
25 C05 C C05 N Y N 0 6.08 -0.611 -0.05
26 C C C N Y N 0 4.875 -1.249 -0.131
27 C7 C C7 N N N 0 7.392 1.426 0.313
28 C8 C C8 N N N 0 8.428 1.973 0.388
29 HOP2 H HOP2 N N N 0 -0.528 3.129 -1.566
30 H1' H H1' N N N 0 -4.266 -2.11 -0.602
31 H6 H H6 N N N 0 -1.051 -0.656 0.157
32 H41 H H41 N N N 0 2.06 -4.159 -0.614
33 H42 H H42 N N N 0 1.131 -5.538 -0.854
34 H7 H H7 N N N 0 -4.683 0.865 0.769
35 H3' H H3' N N N 0 -2.392 -0.424 2.351
36 H3'' H H3'' N N N 0 -4.06 -0.046 2.902
37 H2' H H2' N N N 0 -5.022 -1.825 1.592
38 H2'' H H2'' N N N 0 -3.446 -2.57 2.025
39 H5' H H5' N N N 0 -1.673 1.398 0.828
40 H5'' H H5'' N N N 0 -2.854 2.263 1.84
41 H14 H H14 N N N 0 2.823 1.4 0.454
42 H15 H H15 N N N 0 4.982 2.538 0.611
43 H16 H H16 N N N 0 6.995 -1.166 -0.19
44 H17 H H17 N N N 0 4.838 -2.309 -0.336
45 H18 H H18 N N N 0 9.355 2.462 0.455
46 OP3 O OP3 N N Y 0 -2.851 4.8 -1.658
47 HOP3 H H1 N N Y 0 -2.417 5.641 -1.86