Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0VD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -7.119 0.435 -1.218
2 N1 N N1 N Y N 0 -8.33 0.171 -0.636
3 C2 C C2 N Y N 0 -8.088 -0.56 0.474
4 N2 N N2 N Y N 0 -6.8 -0.744 0.582
5 C12 C C12 N Y N 0 1.878 -0.372 1.07
6 C13 C C13 N Y N 0 0.524 -0.539 1.286
7 C4 C C4 N N N 0 -4.694 -0.12 -0.691
8 C5 C C5 S N N 0 -3.981 0.433 0.546
9 C6 C C6 N N N 0 -2.49 0.342 0.349
10 C8 C C8 N Y N 0 -0.318 -0.808 0.223
11 C10 C C10 N Y N 0 1.546 -0.743 -1.279
12 C9 C C9 N Y N 0 0.192 -0.91 -1.058
13 C7 C C7 N N N 0 -1.795 -0.99 0.461
14 C11 C C11 N Y N 0 2.392 -0.468 -0.215
15 C19 C C19 N Y N 0 7.778 1.506 -0.474
16 C18 C C18 N Y N 0 8.608 0.402 -0.503
17 C17 C C17 N Y N 0 8.12 -0.84 -0.145
18 C20 C C20 N Y N 0 6.459 1.369 -0.081
19 C16 C C16 N Y N 0 6.8 -0.978 0.243
20 C15 C C15 N Y N 0 5.972 0.128 0.283
21 C14 C C14 N N N 0 4.535 -0.021 0.712
22 N3 N N3 N N N 0 -4.365 1.837 0.745
23 C3 C C3 N Y N 0 -6.18 -0.144 -0.445
24 O1 O O1 N N N 0 -1.852 1.337 0.101
25 O2 O O2 N N N 0 3.724 -0.303 -0.43
26 H1 H H1 N N N 0 -6.95 0.994 -2.126
27 H2 H H2 N N N 0 -9.198 0.456 -0.96
28 H3 H H3 N N N 0 -8.836 -0.93 1.159
29 H5 H H5 N N N 0 2.536 -0.163 1.901
30 H6 H H6 N N N 0 0.123 -0.461 2.285
31 H7 H H7 N N N 0 -4.477 0.515 -1.549
32 H8 H H8 N N N 0 -4.342 -1.133 -0.89
33 H9 H H9 N N N 0 -4.268 -0.15 1.421
34 H10 H H10 N N N 0 1.943 -0.818 -2.281
35 H11 H H11 N N N 0 -0.467 -1.125 -1.886
36 H12 H H12 N N N 0 -1.954 -1.401 1.458
37 H13 H H13 N N N 0 -2.201 -1.676 -0.283
38 H14 H H14 N N N 0 8.16 2.477 -0.753
39 H15 H H15 N N N 0 9.64 0.51 -0.805
40 H16 H H16 N N N 0 8.769 -1.703 -0.168
41 H17 H H17 N N N 0 5.81 2.232 -0.058
42 H18 H H18 N N N 0 6.418 -1.949 0.523
43 H19 H H19 N N N 0 4.453 -0.84 1.427
44 H20 H H20 N N N 0 4.197 0.904 1.179
45 H21 H H21 N N N 0 -3.958 2.206 1.591
46 H22 H H22 N N N 0 -4.109 2.398 -0.054