Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 12H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 0.392 0.0 7.318
2 C2 C C2 N N N 0 -0.459 0.0 6.048
3 C3 C C3 N N N 0 0.453 0.0 4.821
4 C4 C C4 N N N 0 -0.398 0.0 3.55
5 C5 C C5 N N N 0 0.514 0.0 2.323
6 C6 C C6 N N N 0 -0.338 0.0 1.053
7 C7 C C7 N N N 0 0.575 0.0 -0.174
8 C8 C C8 N N N 0 -0.277 0.0 -1.444
9 C9 C C9 N N N 0 0.636 0.0 -2.672
10 C10 C C10 N N N 0 -0.216 0.0 -3.942
11 C11 C C11 N N N 0 0.697 0.0 -5.169
12 C12 C C12 N N N 0 -0.142 0.0 -6.421
13 O13 O O13 N N N 0 -0.46 0.0 8.465
14 O14 O O14 N N N 0 -1.348 0.0 -6.339
15 O15 O O15 N N N 0 0.448 0.0 -7.626
16 H11 H 1H1 N N N 0 1.022 0.89 7.334
17 H12 H 2H1 N N N 0 1.022 -0.89 7.334
18 H21 H 1H2 N N N 0 -1.088 -0.89 6.033
19 H22 H 2H2 N N N 0 -1.088 0.89 6.033
20 H31 H 1H3 N N N 0 1.082 0.89 4.836
21 H32 H 2H3 N N N 0 1.082 -0.89 4.836
22 H41 H 1H4 N N N 0 -1.028 -0.89 3.535
23 H42 H 2H4 N N N 0 -1.028 0.89 3.535
24 H51 H 1H5 N N N 0 1.143 0.89 2.338
25 H52 H 2H5 N N N 0 1.143 -0.89 2.338
26 H61 H 1H6 N N N 0 -0.967 -0.89 1.037
27 H62 H 2H6 N N N 0 -0.967 0.89 1.037
28 H71 H 1H7 N N N 0 1.204 0.89 -0.159
29 H72 H 2H7 N N N 0 1.204 -0.89 -0.159
30 H81 H 1H8 N N N 0 -0.906 -0.89 -1.46
31 H82 H 2H8 N N N 0 -0.906 0.89 -1.46
32 H91 H 1H9 N N N 0 1.265 0.89 -2.656
33 H92 H 2H9 N N N 0 1.265 -0.89 -2.656
34 H101 H 1H10 N N N 0 -0.845 -0.89 -3.957
35 H102 H 2H10 N N N 0 -0.845 0.89 -3.957
36 H111 H 1H11 N N N 0 1.326 0.89 -5.154
37 H112 H 2H11 N N N 0 1.326 -0.89 -5.154
38 H13 H H13 N N N 0 0.115 0.0 9.242
39 H15 H H15 N N N 0 -0.09 0.0 -8.429