Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 13L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C4 N Y N 0 -8.289 -0.792 0.761
2 C7 C C7 N Y N 0 -6.171 -0.258 -0.942
3 C6 C C6 N Y N 0 -7.031 -1.277 1.059
4 C9 C C9 N Y N 0 2.399 3.843 0.688
5 C13 C C13 N Y N 0 -8.49 -0.043 -0.384
6 C20 C C20 N N N 0 6.057 -0.293 -2.829
7 C21 C C21 N N N 0 4.645 -0.189 -2.249
8 C8 C C8 N Y N 0 -1.132 -0.476 0.315
9 C18 C C18 N N N 0 -3.6 -0.77 0.205
10 C16 C C16 N Y N 0 2.792 1.641 0.148
11 C19 C C19 N N N 0 7.972 -0.65 0.115
12 C26 C C26 N N N 0 -9.821 2.012 -0.777
13 C1 C C1 N Y N 0 -0.872 -2.863 1.721
14 C2 C C2 N Y N 0 0.25 -2.115 1.419
15 C3 C C3 N Y N 0 -2.123 -2.426 1.337
16 C5 C C5 N Y N 0 -7.432 0.223 -1.234
17 C14 C C14 N Y N 0 -5.966 -1.012 0.207
18 C10 C C10 N Y N 0 1.493 1.323 0.588
19 C11 C C11 N Y N 0 0.126 -0.918 0.715
20 C12 C C12 N Y N 0 -2.261 -1.231 0.626
21 C15 C C15 N Y N 0 1.332 -0.118 0.392
22 C17 C C17 N Y N 0 0.681 2.355 1.086
23 C22 C C22 N N N 0 6.88 -1.272 -1.986
24 C23 C C23 N N N 0 5.525 -0.622 0.048
25 C24 C C24 R N N 0 4.717 0.349 -0.818
26 C25 C C25 N N N 0 10.427 -0.593 0.459
27 C27 C C27 N N N 0 -10.322 -0.075 -2.055
28 C28 C C28 N N N 0 9.307 -0.878 -0.544
29 C29 C C29 N N N 0 -9.864 0.484 -0.707
30 N30 N N30 N Y N 0 3.197 2.909 0.218
31 N31 N N31 N Y N 0 1.176 3.588 1.116
32 N32 N N32 N Y N 0 2.451 -0.571 -0.122
33 N33 N N33 N Y N 0 3.363 0.478 -0.275
34 N34 N N34 N N N 0 6.834 -0.841 -0.582
35 N35 N N35 N N N 0 -0.601 2.095 1.53
36 N36 N N36 N N N 0 -4.691 -1.502 0.506
37 O37 O O37 N N N 0 -3.718 0.271 -0.414
38 H2 H H2 N N N 0 -5.345 -0.05 -1.606
39 O38 O O38 N N N 0 7.921 -0.294 1.274
40 H1 H H1 N N N 0 -9.119 -1.002 1.42
41 H3 H H3 N N N 0 -6.875 -1.862 1.953
42 H4 H H4 N N N 0 2.761 4.86 0.73
43 H5 H H5 N N N 0 6.003 -0.654 -3.856
44 H9 H H9 N N N 0 -1.232 0.451 -0.23
45 H6 H H6 N N N 0 6.531 0.689 -2.813
46 H7 H H7 N N N 0 4.05 0.488 -2.862
47 H8 H H8 N N N 0 4.181 -1.175 -2.243
48 H10 H H10 N N N 0 -10.815 2.393 -1.01
49 H11 H H11 N N N 0 -9.495 2.411 0.184
50 H12 H H12 N N N 0 -9.122 2.32 -1.554
51 H13 H H13 N N N 0 -0.77 -3.79 2.266
52 H14 H H14 N N N 0 1.227 -2.463 1.723
53 H15 H H15 N N N 0 -2.997 -3.015 1.575
54 H16 H H16 N N N 0 -7.592 0.809 -2.128
55 H17 H H17 N N N 0 6.46 -2.273 -2.074
56 H18 H H18 N N N 0 7.913 -1.275 -2.333
57 H19 H H19 N N N 0 5.664 -0.197 1.042
58 H20 H H20 N N N 0 4.994 -1.571 0.125
59 H21 H H21 N N N 0 5.203 1.325 -0.821
60 H22 H H22 N N N 0 10.36 0.442 0.794
61 H23 H H23 N N N 0 10.326 -1.26 1.315
62 H24 H H24 N N N 0 11.393 -0.758 -0.019
63 H25 H H25 N N N 0 -10.353 -1.164 -2.005
64 H26 H H26 N N N 0 -11.316 0.306 -2.288
65 H27 H H27 N N N 0 -9.623 0.233 -2.832
66 H28 H H28 N N N 0 9.375 -1.913 -0.879
67 H29 H H29 N N N 0 9.408 -0.212 -1.401
68 H30 H H30 N N N 0 -10.563 0.176 0.071
69 H31 H H31 N N N 0 -0.961 1.196 1.475
70 H32 H H32 N N N 0 -1.142 2.812 1.897
71 H33 H H33 N N N 0 -4.592 -2.368 0.93