Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 194

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 4.222 -0.584 -1.976
2 C2 C C2 N Y N 0 2.852 -0.5 -1.842
3 C3 C C3 N Y N 0 2.27 -0.457 -0.581
4 C4 C C4 N Y N 0 3.064 -0.499 0.559
5 C5 C C5 N Y N 0 4.446 -0.589 0.438
6 C6 C C6 N Y N 0 5.033 -0.626 -0.842
7 C10 C C10 N N N 0 6.499 -0.716 -0.983
8 O1 O O1 N N N 0 7.108 -1.615 -0.436
9 O2 O O2 N N N 0 7.163 0.198 -1.717
10 C20 C C20 N N N 0 5.296 -0.634 1.647
11 O5 O O5 N N N 0 4.729 -0.707 2.867
12 O4 O O4 N N N 0 6.505 -0.604 1.541
13 O3 O O3 N N N 0 0.921 -0.375 -0.461
14 C31 C C31 N Y N 0 0.634 0.909 -0.119
15 C34 C C34 N Y N 0 -0.674 1.274 0.192
16 C35 C C35 N Y N 0 -0.959 2.585 0.546
17 C36 C C36 N Y N 0 0.052 3.527 0.577
18 C37 C C37 N Y N 0 1.349 3.166 0.263
19 C38 C C38 N Y N 0 1.642 1.86 -0.085
20 N1 N N1 N N N 0 -1.696 0.318 0.159
21 C44 C C44 N N N 0 -2.974 0.704 -0.025
22 O6 O O6 N N N 0 -3.229 1.866 -0.273
23 C51 C C51 N Y N 0 -4.067 -0.287 0.075
24 C53 C C53 N Y N 0 -5.392 0.11 -0.109
25 C54 C C54 N Y N 0 -6.407 -0.82 -0.02
26 C55 C C55 N Y N 0 -6.114 -2.143 0.263
27 C56 C C56 N Y N 0 -4.802 -2.542 0.452
28 C57 C C57 N Y N 0 -3.778 -1.623 0.36
29 N2 N N2 N N N 1 -7.812 -0.402 -0.221
30 O7 O O7 N N N -1 -8.709 -1.222 -0.137
31 O8 O O8 N N N 0 -8.072 0.761 -0.47
32 H1 H H1 N N N 0 4.668 -0.616 -2.959
33 H2 H H2 N N N 0 2.228 -0.467 -2.723
34 H4 H H4 N N N 0 2.608 -0.466 1.537
35 HO1 H HO1 N N N 0
36 HO5 H HO5 N N N 0 5.285 -0.737 3.658
37 H35 H H35 N N N 0 -1.971 2.87 0.792
38 H36 H H36 N N N 0 -0.172 4.548 0.848
39 H37 H H37 N N N 0 2.135 3.905 0.289
40 H38 H H38 N N N 0 2.656 1.582 -0.33
41 HN1 H HN1 N N N 0 -1.484 -0.622 0.269
42 H53 H H53 N N N 0 -5.622 1.142 -0.329
43 H55 H H55 N N N 0 -6.912 -2.866 0.336
44 H56 H H56 N N N 0 -4.581 -3.576 0.673
45 H57 H H57 N N N 0 -2.755 -1.936 0.507