Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1D1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O23 O O23 N N N 0 -4.041 -1.453 -0.564
2 C13 C C13 N N N 0 -2.885 -1.17 -0.334
3 N12 N N12 N N N 0 -1.907 -2.082 -0.527
4 C24 C C24 N N N 0 -2.233 -3.463 -0.893
5 C9 C C9 N Y N 0 -0.576 -1.679 -0.369
6 C8 C C8 N Y N 0 0.447 -2.609 -0.279
7 N7 N N7 N Y N 0 1.69 -2.18 -0.115
8 C14 C C14 R N N 0 -2.523 0.206 0.164
9 C21 C C21 N N N 0 -2.394 0.176 1.688
10 C22 C C22 N N N 0 -3.742 -0.199 2.306
11 N15 N N15 N N N 0 -1.251 0.639 -0.422
12 C16 C C16 N N N 0 -0.817 1.921 0.15
13 C20 C C20 N N N 0 -1.972 2.942 0.094
14 C19 C C19 N N N 0 -1.274 4.288 -0.227
15 C18 C C18 N N N 0 -0.165 3.869 -1.224
16 C6 C C6 N Y N 0 1.958 -0.882 -0.037
17 C17 C C17 N N N 0 0.331 2.51 -0.688
18 C10 C C10 N Y N 0 -0.262 -0.317 -0.298
19 N11 N N11 N Y N 0 1.005 0.04 -0.125
20 C2 C C2 N Y N 0 3.357 -0.45 0.155
21 C3 C C3 N Y N 0 3.793 0.838 0.26
22 H3 H H3 N N N 0 -1.849 -4.141 -0.131
23 C4 C C4 N Y N 0 5.184 0.795 0.432
24 C5 C C5 N Y N 0 5.559 -0.504 0.428
25 N1 N N1 N Y N 0 4.449 -1.274 0.264
26 H1 H H1 N N N 0 -3.315 -3.573 -0.966
27 H2 H H2 N N N 0 -1.778 -3.701 -1.854
28 H4 H H4 N N N 0 0.234 -3.666 -0.34
29 H5 H H5 N N N 0 -3.307 0.909 -0.116
30 H6 H H6 N N N 0 -1.645 -0.562 1.975
31 H7 H H7 N N N 0 -2.091 1.159 2.047
32 H8 H H8 N N N 0 -3.678 -0.121 3.392
33 H9 H H9 N N N 0 -4.512 0.479 1.938
34 H10 H H10 N N N 0 -3.997 -1.222 2.03
35 H11 H H11 N N N 0 -0.493 1.779 1.181
36 H12 H H12 N N N 0 -2.675 2.68 -0.697
37 H13 H H13 N N N 0 -2.481 2.996 1.056
38 H14 H H14 N N N 0 -1.972 4.983 -0.694
39 H15 H H15 N N N 0 -0.84 4.721 0.674
40 H16 H H16 N N N 0 -0.577 3.756 -2.227
41 H17 H H17 N N N 0 0.644 4.598 -1.222
42 H18 H H18 N N N 0 1.213 2.655 -0.063
43 H19 H H19 N N N 0 0.567 1.845 -1.518
44 H20 H H20 N N N 0 3.18 1.726 0.218
45 H21 H H21 N N N 0 5.838 1.647 0.547
46 H22 H H22 N N N 0 6.569 -0.869 0.539
47 H23 H H23 N N N 0 4.433 -2.243 0.229