Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1VW

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C5 C C5 N N N 0 3.874 2.038 -0.431
2 C6 C C6 N N N 0 3.508 1.951 -1.914
3 C11 C C11 N Y N 0 4.171 -1.721 0.235
4 C7 C C7 N N N 0 4.351 0.865 -2.584
5 C8 C C8 N N N 0 4.076 -0.482 -1.911
6 C9 C C9 S N N 0 4.442 -0.395 -0.428
7 C3 C C3 R N N 0 3.599 0.692 0.242
8 O1 O O1 N N N 0 1.787 -0.511 -0.674
9 C2 C C2 N N N 0 2.138 0.351 0.104
10 N12 N N12 N Y N 0 3.181 -2.582 -0.065
11 N13 N N13 N Y N 0 3.304 -3.593 0.727
12 N14 N N14 N Y N 0 4.318 -3.397 1.496
13 N15 N N15 N Y N 0 4.858 -2.262 1.211
14 N16 N N16 N N N 0 1.22 1.003 0.846
15 C17 C C17 N N N 0 1.596 2.139 1.703
16 C18 C C18 N N N 0 0.895 3.385 1.165
17 C19 C C19 N Y N 0 -0.561 3.109 0.899
18 C20 C C20 N Y N 0 -1.061 1.837 0.73
19 C21 C C21 N Y N 0 -2.413 1.655 0.472
20 C22 C C22 N Y N 0 -3.263 2.739 0.391
21 C23 C C23 N Y N 0 -2.764 4.016 0.569
22 C24 C C24 N Y N 0 -1.42 4.198 0.821
23 C25 C C25 S N N 0 -0.193 0.612 0.827
24 C27 C C27 N N N 0 -0.459 -0.296 -0.376
25 N28 N N28 N N N 0 -1.857 -0.734 -0.358
26 C29 C C29 N N N 0 -2.392 -1.532 0.583
27 O30 O O30 N N N 0 -1.802 -2.001 1.536
28 C31 C C31 N Y N 0 -3.82 -1.744 0.265
29 C32 C C32 N Y N 0 -4.849 -2.456 0.86
30 C33 C C33 N Y N 0 -6.112 -2.446 0.288
31 C34 C C34 N Y N 0 -6.351 -1.732 -0.871
32 C35 C C35 N Y N 0 -5.331 -1.015 -1.478
33 C36 C C36 N Y N 0 -4.064 -1.015 -0.917
34 C37 C C37 N N N 0 -2.775 -0.386 -1.277
35 O38 O O38 N N N 0 -2.58 0.33 -2.238
36 H1 H H1 N N N 0 4.931 2.285 -0.331
37 H2 H H2 N N N 0 3.273 2.813 0.047
38 H3 H H3 N N N 0 2.451 1.704 -2.014
39 H4 H H4 N N N 0 3.704 2.91 -2.394
40 H5 H H5 N N N 0 4.09 0.803 -3.641
41 H6 H H6 N N N 0 5.408 1.112 -2.485
42 H7 H H7 N N N 0 3.019 -0.729 -2.011
43 H8 H H8 N N N 0 4.677 -1.256 -2.389
44 H9 H H9 N N N 0 5.499 -0.148 -0.329
45 H10 H H10 N N N 0 3.859 0.754 1.298
46 H11 H H11 N N N 0 2.502 -2.464 -0.748
47 H12 H H12 N N N 0 1.276 1.949 2.728
48 H13 H H13 N N N 0 2.676 2.282 1.674
49 H14 H H14 N N N 0 0.98 4.188 1.898
50 H15 H H15 N N N 0 1.377 3.695 0.237
51 H16 H H16 N N N 0 -2.802 0.657 0.332
52 H17 H H17 N N N 0 -4.313 2.591 0.189
53 H18 H H18 N N N 0 -3.424 4.868 0.511
54 H19 H H19 N N N 0 -1.032 5.197 0.96
55 H20 H H20 N N N 0 -0.427 0.074 1.746
56 H21 H H21 N N N 0 -0.262 0.253 -1.296
57 H22 H H22 N N N 0 0.195 -1.166 -0.325
58 H23 H H23 N N N 0 -4.668 -3.016 1.765
59 H24 H H24 N N N 0 -6.915 -3.001 0.751
60 H25 H H25 N N N 0 -7.339 -1.732 -1.308
61 H26 H H26 N N N 0 -5.523 -0.458 -2.383