Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1YV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O23 O O23 N N N 0 4.715 0.422 -1.773
2 S24 S S24 N N N 0 5.084 0.223 -0.415
3 O22 O O22 N N N 0 6.295 -0.438 -0.075
4 C18 C C18 N N N 0 4.915 1.765 0.524
5 C2 C C2 N N N 0 5.114 1.48 2.013
6 C1 C C1 N N N 0 5.969 2.769 0.051
7 N21 N N21 N N N 0 3.898 -0.762 0.19
8 C12 C C12 N N N 0 2.488 -0.409 0.005
9 C19 C C19 R N N 0 1.613 -1.627 0.309
10 C3 C C3 N N N 0 1.893 -2.725 -0.719
11 C17 C C17 N Y N 0 0.16 -1.232 0.239
12 C10 C C10 N Y N 0 -0.646 -1.373 1.354
13 C11 C C11 N Y N 0 -0.36 -0.724 -0.938
14 C9 C C9 N Y N 0 -1.688 -0.355 -1.006
15 C16 C C16 N Y N 0 -2.506 -0.495 0.114
16 C8 C C8 N Y N 0 -1.977 -1.013 1.296
17 C15 C C15 N Y N 0 -3.934 -0.101 0.047
18 C6 C C6 N Y N 0 -4.749 -0.242 1.17
19 C7 C C7 N Y N 0 -4.459 0.417 -1.137
20 C5 C C5 N Y N 0 -5.784 0.784 -1.2
21 C14 C C14 N Y N 0 -6.603 0.638 -0.078
22 C4 C C4 N Y N 0 -6.075 0.124 1.11
23 C13 C C13 N N N 0 -7.982 1.019 -0.142
24 N20 N N20 N N N 0 -9.076 1.322 -0.193
25 H1 H H1 N N N 0 3.92 2.181 0.363
26 H2 H H2 N N N 0 5.012 2.407 2.578
27 H3 H H3 N N N 0 4.363 0.765 2.35
28 H4 H H4 N N N 0 6.109 1.064 2.174
29 H5 H H5 N N N 0 5.826 2.972 -1.01
30 H6 H H6 N N N 0 5.867 3.695 0.615
31 H7 H H7 N N N 0 6.963 2.353 0.211
32 H8 H H8 N N N 0 4.136 -1.572 0.666
33 H9 H H9 N N N 0 2.226 0.405 0.682
34 H10 H H10 N N N 0 2.324 -0.092 -1.025
35 H11 H H11 N N N 0 1.841 -1.997 1.308
36 H12 H H12 N N N 0 1.665 -2.354 -1.718
37 H13 H H13 N N N 0 2.944 -3.01 -0.668
38 H14 H H14 N N N 0 1.27 -3.592 -0.502
39 H15 H H15 N N N 0 -0.234 -1.765 2.272
40 H16 H H16 N N N 0 0.275 -0.615 -1.805
41 H17 H H17 N N N 0 -2.092 0.046 -1.924
42 H18 H H18 N N N 0 -2.607 -1.125 2.167
43 H19 H H19 N N N 0 -4.34 -0.64 2.088
44 H20 H H20 N N N 0 -3.825 0.53 -2.004
45 H21 H H21 N N N 0 -6.19 1.185 -2.117
46 H22 H H22 N N N 0 -6.706 0.014 1.979